|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
40-338 |
4.50e-99 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 295.48 E-value: 4.50e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 40 TFYPLVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGA 119
Cdd:COG1172 18 ELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLPI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 120 AALAAGIGVG-VALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSGKVLGVQMPVLTMLA 198
Cdd:COG1172 98 LLAILLALLVgALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 199 VYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAV 278
Cdd:COG1172 178 VALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAV 257
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 279 VMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERR 338
Cdd:COG1172 258 VIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRR 317
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
44-333 |
3.67e-80 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 246.94 E-value: 3.67e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALA 123
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 124 AGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPID----GLPDWIRFFGSGKVLGVQMPVLTMLAV 199
Cdd:PRK09512 102 AALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtgftDNADLFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 200 YALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVV 279
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490656587 280 MGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYI 333
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLV 315
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
74-333 |
8.27e-76 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 233.84 E-value: 8.27e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 74 VSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVG-VALGAANGLFVAFAGMPPIIVTL 152
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVgALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 153 ATMGIARGLALIYTGGYPIDGLPDWIRF-FGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGV 231
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 232 RVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNM 311
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|..
gi 490656587 312 IGVNPYVQNVIKGAIILLAIYI 333
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVAL 262
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
44-331 |
2.49e-43 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 153.38 E-value: 2.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDS-FLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAAL 122
Cdd:NF040906 8 LIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 123 AAGIGVGVAL-GAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSG---KVLGVQMP-VLTML 197
Cdd:NF040906 88 VLLCLLVGALiGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGflpDLFGGTGLhLLTLL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 198 ------------------------------------------AVYALAWLM-----------------------LERMPF 212
Cdd:NF040906 168 lgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaAILFFTYLLasyrglpnvliilgvlilvysfvTNRTVI 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 213 GRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSI 292
Cdd:NF040906 248 GRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTV 327
|
330 340 350
....*....|....*....|....*....|....*....
gi 490656587 293 VGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAI 331
Cdd:NF040906 328 VGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
66-330 |
1.14e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.93 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 66 NLENVLRQVSINAIIGVGMT-CVILTGGIDLSVGSVMALSGTLAAGLLVAGANGA-AALAAGIGVGVALGAANGLFVAFA 143
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTlIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLwLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 144 GMPPIIVTLATMGIARGLALIYTGG-----YPIDGLPDWIRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYA 218
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGilggeGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 219 IGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQP-NAGGGFELDAIAAVVMGGTsiaggrGSIVGTLV 297
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....
gi 490656587 298 GALLLGVL-NNGLNMIGVNPYVQNVIKGAIILLA 330
Cdd:pfam02653 235 GSLIIGLVqSLGLGALGSPPELSLLVLGALLILV 268
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
40-338 |
4.50e-99 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 295.48 E-value: 4.50e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 40 TFYPLVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGA 119
Cdd:COG1172 18 ELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALGLPI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 120 AALAAGIGVG-VALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSGKVLGVQMPVLTMLA 198
Cdd:COG1172 98 LLAILLALLVgALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLGIPVPVLIALV 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 199 VYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAV 278
Cdd:COG1172 178 VALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAIAAV 257
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 279 VMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERR 338
Cdd:COG1172 258 VIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRR 317
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
44-333 |
3.67e-80 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 246.94 E-value: 3.67e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALA 123
Cdd:PRK09512 22 LIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 124 AGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPID----GLPDWIRFFGSGKVLGVQMPVLTMLAV 199
Cdd:PRK09512 102 AALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINtgftDNADLFGWFGIGRPLGIPTPVWIMAIV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 200 YALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVV 279
Cdd:PRK09512 182 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVV 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490656587 280 MGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYI 333
Cdd:PRK09512 262 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLV 315
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
74-333 |
8.27e-76 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 233.84 E-value: 8.27e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 74 VSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVG-VALGAANGLFVAFAGMPPIIVTL 152
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVgALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 153 ATMGIARGLALIYTGGYPIDGLPDWIRF-FGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGV 231
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFfLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 232 RVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNM 311
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|..
gi 490656587 312 IGVNPYVQNVIKGAIILLAIYI 333
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVAL 262
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
44-338 |
1.25e-67 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 215.18 E-value: 1.25e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALA 123
Cdd:COG4158 33 LPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLGLLGIP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 124 AGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSGKVLGVQMPVLTMLAVYALA 203
Cdd:COG4158 113 AALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNGYLLGIPWLVVIALAVVLAS 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 204 WLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPN-AGGGFELDAIAAVVMGG 282
Cdd:COG4158 193 WFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLqLGQGYELDAIAAVILGG 272
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 490656587 283 TSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERR 338
Cdd:COG4158 273 TSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQ 328
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
44-333 |
8.48e-61 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 199.57 E-value: 8.48e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASD-SFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAAL 122
Cdd:COG4214 28 IIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGLPWWLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 123 AAGIGVG-VALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSG----------------- 184
Cdd:COG4214 108 ILAALLVgALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGflpdilgtlswvlgava 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 185 ------------------------------KVL-----------------GVQMPVLTMLAVYALAWLMLERMPFGRYVY 217
Cdd:COG4214 188 vaayvalqlrsrrrrrryglpveplwlfvlKLAllavlilgavyllnsyrGIPIVVLILLVLVVVYTFVLTRTVFGRHIY 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 218 AIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLV 297
Cdd:COG4214 268 AVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVI 347
|
330 340 350
....*....|....*....|....*....|....*.
gi 490656587 298 GALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYI 333
Cdd:COG4214 348 GALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
40-335 |
1.87e-48 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 164.95 E-value: 1.87e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 40 TFYPLVGLVAVCVAMvfASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGAN-G 118
Cdd:PRK09699 14 TFFILAIIVAIFGSL--SPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDpF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 119 AAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLP-DWIRFFGsGKVLGVQMPVLTML 197
Cdd:PRK09699 92 LAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSfDFVNFFA-ASVIGIPVPVIFSL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 198 AVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAA 277
Cdd:PRK09699 171 IVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIAS 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 490656587 278 VVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGR 335
Cdd:PRK09699 251 AIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDR 308
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
44-339 |
3.73e-48 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 164.85 E-value: 3.73e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALA 123
Cdd:PRK11285 33 LVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLGVA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 124 AGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIdGLPDwIRFF--GSGKVLGVQMPVLTMLAVYA 201
Cdd:PRK11285 113 AGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAV-GISD-ERFFalGYANFFGVPAPIWLTVACFV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 202 LAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMG 281
Cdd:PRK11285 191 VFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLG 270
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 490656587 282 GTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYIGRERRT 339
Cdd:PRK11285 271 GVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
47-333 |
5.62e-45 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 156.77 E-value: 5.62e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 47 LVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLL------------VA 114
Cdd:PRK09478 22 LLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLqsmdnankvfpeLA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 115 GANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYT---GGYPIDGLPDWIRFFGSG--KVLGV 189
Cdd:PRK09478 102 TMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYdfvGASPISGFDSGFSTFAQGfvALGSF 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 190 QMPVLTMLAVYALA--WLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAG 267
Cdd:PRK09478 182 RLSYITFYALIAVAfvWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLG 261
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490656587 268 GGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAIYI 333
Cdd:PRK09478 262 FMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVAL 327
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
44-331 |
2.49e-43 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 153.38 E-value: 2.49e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDS-FLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAAL 122
Cdd:NF040906 8 LIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 123 AAGIGVGVAL-GAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSG---KVLGVQMP-VLTML 197
Cdd:NF040906 88 VLLCLLVGALiGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGflpDLFGGTGLhLLTLL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 198 ------------------------------------------AVYALAWLM-----------------------LERMPF 212
Cdd:NF040906 168 lgvlaaaalvwsqlrgrrrrikyglevepmalfiaklvliaaAILFFTYLLasyrglpnvliilgvlilvysfvTNRTVI 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 213 GRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSI 292
Cdd:NF040906 248 GRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTV 327
|
330 340 350
....*....|....*....|....*....|....*....
gi 490656587 293 VGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLAI 331
Cdd:NF040906 328 VGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
41-295 |
8.30e-40 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 142.40 E-value: 8.30e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 41 FYPLVGLVAVCVAM----VFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGA 116
Cdd:PRK11618 5 NLPLMITIGVFVLGylfcLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 117 NGAAALAAGIGVGVAL-GAANGLFVAFAGMPPIIVTLATMGIARGLA-LIYTGGYPID-----GLPDW-IRFFGSGKVlg 188
Cdd:PRK11618 85 WSPLLAFPLVLVMGAAfGAFMGALIHYLKLPAFIVTLAGMFLARGVSfLVSEESIPINhpfydTLSSLaWKLPGGGRL-- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 189 vQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGG 268
Cdd:PRK11618 163 -SAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAV 241
|
250 260
....*....|....*....|....*..
gi 490656587 269 GFELDAIAAVVMGGTSIAGGRGSIVGT 295
Cdd:PRK11618 242 GVELDAIAAVVIGGTLLTGGVGTVLGT 268
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
44-337 |
3.62e-34 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 128.31 E-value: 3.62e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 44 LVGLVAVCVAMVFASDSFLSAANLENVLRQVSINAIIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALA 123
Cdd:PRK15432 14 LLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLPVACL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 124 AGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIARGLALIYTGGYPIDGLPDWIRFFGSGKVLGVQ-MPVLTMLAVYAL 202
Cdd:PRK15432 94 ATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISpIGWLTLILILAM 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 203 AWLmLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGG 282
Cdd:PRK15432 174 AWL-LAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGG 252
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 490656587 283 TSIAGGRGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGaIILLAIYI--GRER 337
Cdd:PRK15432 253 ISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAG-LVLLGVLVfdGRLR 308
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
79-335 |
6.66e-26 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 105.68 E-value: 6.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 79 IIGVGMTCVILTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLATMGIA 158
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLF 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 159 RGLALIYTG-----GYP-IDGLPDWIRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVR 232
Cdd:PRK15038 127 GGSALLLSGmagatGYEgIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIP 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 233 VSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAGGRGSIVGTLVGALLLGVLNNGLNMI 312
Cdd:PRK15038 207 VNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMA 286
|
250 260
....*....|....*....|...
gi 490656587 313 GVNPYVQNVIKGAIILLAIyIGR 335
Cdd:PRK15038 287 GVPNQISSALSGALLIVVV-VGR 308
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
66-330 |
1.14e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.93 E-value: 1.14e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 66 NLENVLRQVSINAIIGVGMT-CVILTGGIDLSVGSVMALSGTLAAGLLVAGANGA-AALAAGIGVGVALGAANGLFVAFA 143
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTlIYGIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLwLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 144 GMPPIIVTLATMGIARGLALIYTGG-----YPIDGLPDWIRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYA 218
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGilggeGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 219 IGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQP-NAGGGFELDAIAAVVMGGTsiaggrGSIVGTLV 297
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVVI 234
|
250 260 270
....*....|....*....|....*....|....
gi 490656587 298 GALLLGVL-NNGLNMIGVNPYVQNVIKGAIILLA 330
Cdd:pfam02653 235 GSLIIGLVqSLGLGALGSPPELSLLVLGALLILV 268
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
75-331 |
2.29e-16 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 77.70 E-value: 2.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 75 SINAIIGVGMTCVILTGGI-DLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVGVALGAANGLFVAFAGMPPIIVTLA 153
Cdd:cd06574 2 LIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 154 TMGIARGLALIYTGGYPI-----DGLPDWIRFFGSGKVLGVQMPVLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRL 228
Cdd:cd06574 82 IMIGLYSINLRIMGGPNIplgtrDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 229 SGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGGGFELDAIAAVVMGGTSIAG--GRGSIVGTLVGALLLGVLN 306
Cdd:cd06574 162 LGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIAL 241
|
250 260
....*....|....*....|....*
gi 490656587 307 NGLNMIGVNPYVQNVIKGAIILLAI 331
Cdd:cd06574 242 ALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
142-287 |
4.07e-07 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 50.83 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 142 FAGMPPIIVTLATMGIA---RGLALIYTGGYPIdGLPDWirFFGSGKVLGVQMP------VLTMLAVYALAWLMLERMPF 212
Cdd:COG0559 87 LRGAPPLALLLATIGLSlvlQGLVLLIFGADPR-SFPAL--LSGSVELGGVSIPayrlfiIVVALVLLAALWLFLRRTRL 163
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490656587 213 GRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALAAlVLTGRLMSGQPNAGGGFELDAIAAVVMGG-TSIAG 287
Cdd:COG0559 164 GLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAG-VLLAPIYSVSPTMGFLLGLKAFAAVVLGGlGSIPG 238
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
75-287 |
7.82e-07 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 49.74 E-value: 7.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 75 SINAIIGVGMTCVI-LTGGIDLSVGSVMALSGTLAAGLLVAGANGAAALAAGIGVGVALGAANGLFVAF-----AGMPPI 148
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVLrplrgAPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 149 IVTLATMGIARGLALIYTGGYPIDGLPDWirFFGSGKVLGVQMP------VLTMLAVYALAWLMLERMPFGRYVYAIGGN 222
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPL--LSGSVELGGVTIPpyrlfiIAVALVLLAALYLFLRRTRLGRAIRAVAQN 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490656587 223 EHATRLSGVRVSRVKLAVYTFAGLTSALAAlVLTGRLMSGQPNAGGGFELDAIAAVVMGG-TSIAG 287
Cdd:cd06582 164 PEAARLLGINVRRVFALTFALGAALAGLAG-VLLAPITGVSPTMGLLLLLKAFAAVVLGGlGSIPG 228
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
149-294 |
2.62e-05 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 45.07 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 149 IVTLATMGIARGLALI---YTGGYpiDGLPDWIRFFGSGKVLGVQMP----VLTMLAVYALAWLMLERMPFGRYVYAIGG 221
Cdd:COG4177 89 IATLAFAEIVRLLALNlesLTGGA--DGLSGIPRPTLFGLDLGSPLAfyylVLALLVLVLLLLRRLVRSRFGRALRAIRE 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490656587 222 NEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAgggFELDA-IAAVVMggtSIAGGRGSIVG 294
Cdd:COG4177 167 NEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPES---FSFLLsIEILLM---VVLGGLGSLLG 234
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
193-330 |
1.11e-04 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 42.81 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 193 VLTMLAVYALAWLMLERMPFGRYVYAIGGNEHATRLSGVRVSRVKLAVYTFAGLTSALA-ALVLTGRLMSGQPNAGGGFE 271
Cdd:cd06580 98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAgAYLVLGVQGRFTEGMSAGYG 177
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90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 490656587 272 LDAIAAVVMGGTSIAggrGSIVGTLVGALLLGVLNNGLNMIGVNPYVQNVIKGAIILLA 330
Cdd:cd06580 178 FIAIAVALLGRWNPL---GILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLFV 233
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| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
149-283 |
2.40e-04 |
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Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 42.05 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490656587 149 IVTLATMGIARGLALI---YTGGYpiDGLPDWIRFFGSGKVLGVQMP----VLTMLAVYALAWLMLERMPFGRYVYAIGG 221
Cdd:cd06581 79 IATLAFAEIVRLLALNwssLTGGS--NGLSGIPPPLLGGLLLSSPLAfyylVLAVLLLVLLLLRRLVRSPFGRALRAIRE 156
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90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490656587 222 NEHATRLSGVRVSRVKLAVYTFAGLTSALAALVLTGRLMSGQPNAGG-GFELDAIAAVVMGGT 283
Cdd:cd06581 157 NEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGfALSIELLLMVVLGGL 219
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