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Conserved domains on  [gi|490679508|ref|WP_004544290|]
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methyltransferase domain-containing protein [Burkholderia pseudomallei]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ketoArg_3Met super family cl28100
2-ketoarginine methyltransferase; This SAM-dependent C-methyltransferase performs the middle ...
35-360 1.93e-100

2-ketoarginine methyltransferase; This SAM-dependent C-methyltransferase performs the middle step of a three step conversion from arginine to beta-methylarginine. It performs a C-methylation at position 3 of 5-guanidino-2-oxopentanoic acid (keto-arginine). An aminotransferase converts arginine to 5-guanidino-2-oxopentanoic acid, and later converts 5-guanidino-3-methyl-2-oxopentanoic acid to beta-methylarginine.


The actual alignment was detected with superfamily member TIGR04543:

Pssm-ID: 275336 [Multi-domain]  Cd Length: 331  Bit Score: 300.43  E-value: 1.93e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   35 LDYVKGFVGAKVIFQMLKLGVFDDLLAG--KTLEEIASGRSLDPYLLRTVFEYLSVEGLLVKEGrgggASFRLSDYGSRI 112
Cdd:TIGR04543   4 IQPIRGFVLAQAIYHLFESGLFDELAEAgpRSVGELAEELGLDSDRLTGFLRYLANEGIVVESD----GVFSLTEKGREL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  113 KHYEGWFNILIGGYDNIFSNIGAMLEEGIGGYKRDGKWVGVGSCQISKYDTIPITKAFIESVKPDAKQIVDFGCGNALYL 192
Cdd:TIGR04543  80 AEFRPWYELLVGGYGETFLQLGEVLQQGAGWASRDGTKVGIGSCGISHYDAIPLVRSLLARLPGAPASLVDLGCGDGRFL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  193 CTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDY---EIDEQPDFILFGFVLQEIIAQIGRPAFIE 269
Cdd:TIGR04543 160 ADFCEALPEISAIGVDPDAGSYRAARALIRERGLADRVSLVNAGAEDFlrsDLGSGPDFFVLGFVLQEILGQEGRGAVVG 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  270 YLRKLGRKFADSYLMVMEVDYDIDNREVMHSPMGRGYYNPYFLLHPFTNQLLLPKREWDEIFAQAGYDVVRDEVTSPKAD 349
Cdd:TIGR04543 240 FLRTILARFPDAHLIVIEVDHRPDDPAVMRHGLGLAYYNPYYLLHYFTEQRLETDAFWEELFAEAGLSVVAKLTTDPEVD 319
                         330
                  ....*....|.
gi 490679508  350 PSGFGICYVLK 360
Cdd:TIGR04543 320 STGLELGYLLR 330
 
Name Accession Description Interval E-value
ketoArg_3Met TIGR04543
2-ketoarginine methyltransferase; This SAM-dependent C-methyltransferase performs the middle ...
35-360 1.93e-100

2-ketoarginine methyltransferase; This SAM-dependent C-methyltransferase performs the middle step of a three step conversion from arginine to beta-methylarginine. It performs a C-methylation at position 3 of 5-guanidino-2-oxopentanoic acid (keto-arginine). An aminotransferase converts arginine to 5-guanidino-2-oxopentanoic acid, and later converts 5-guanidino-3-methyl-2-oxopentanoic acid to beta-methylarginine.


Pssm-ID: 275336 [Multi-domain]  Cd Length: 331  Bit Score: 300.43  E-value: 1.93e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   35 LDYVKGFVGAKVIFQMLKLGVFDDLLAG--KTLEEIASGRSLDPYLLRTVFEYLSVEGLLVKEGrgggASFRLSDYGSRI 112
Cdd:TIGR04543   4 IQPIRGFVLAQAIYHLFESGLFDELAEAgpRSVGELAEELGLDSDRLTGFLRYLANEGIVVESD----GVFSLTEKGREL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  113 KHYEGWFNILIGGYDNIFSNIGAMLEEGIGGYKRDGKWVGVGSCQISKYDTIPITKAFIESVKPDAKQIVDFGCGNALYL 192
Cdd:TIGR04543  80 AEFRPWYELLVGGYGETFLQLGEVLQQGAGWASRDGTKVGIGSCGISHYDAIPLVRSLLARLPGAPASLVDLGCGDGRFL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  193 CTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDY---EIDEQPDFILFGFVLQEIIAQIGRPAFIE 269
Cdd:TIGR04543 160 ADFCEALPEISAIGVDPDAGSYRAARALIRERGLADRVSLVNAGAEDFlrsDLGSGPDFFVLGFVLQEILGQEGRGAVVG 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  270 YLRKLGRKFADSYLMVMEVDYDIDNREVMHSPMGRGYYNPYFLLHPFTNQLLLPKREWDEIFAQAGYDVVRDEVTSPKAD 349
Cdd:TIGR04543 240 FLRTILARFPDAHLIVIEVDHRPDDPAVMRHGLGLAYYNPYYLLHYFTEQRLETDAFWEELFAEAGLSVVAKLTTDPEVD 319
                         330
                  ....*....|.
gi 490679508  350 PSGFGICYVLK 360
Cdd:TIGR04543 320 STGLELGYLLR 330
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
174-276 1.00e-11

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 62.64  E-value: 1.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 174 VKPDAKqIVDFGCGNALYLCTLAKELGdIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDYEIDEQPDFIlfgf 253
Cdd:COG2230   49 LKPGMR-VLDIGCGWGGLALYLARRYG-VRVTGVTLSPEQLEYARERAAEAGLADRVEVRLADYRDLPADGQFDAI---- 122
                         90       100
                 ....*....|....*....|...
gi 490679508 254 VLQEIIAQIGRPAFIEYLRKLGR 276
Cdd:COG2230  123 VSIGMFEHVGPENYPAYFAKVAR 145
PKS_MT smart00828
Methyltransferase in polyketide synthase (PKS) enzymes;
179-339 1.05e-08

Methyltransferase in polyketide synthase (PKS) enzymes;


Pssm-ID: 214839 [Multi-domain]  Cd Length: 224  Bit Score: 55.11  E-value: 1.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   179 KQIVDFGCGNALYLCTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDyeiDEQPDF--ILFGFvlq 256
Cdd:smart00828   1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK---DPFPDTydLVFGF--- 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   257 EIIAQIGRPAfiEYLRKLGRKFADSYLMVMEvdydidnrEVMHSPMGRgyynpyfLLHPFTNQLLLPKREWDEIFAQAGY 336
Cdd:smart00828  75 EVIHHIKDKM--DLFSNISRHLKDGGHLVLA--------DFIANLLSA-------IEHEETTSYLVTREEWAELLARNNL 137

                   ...
gi 490679508   337 DVV 339
Cdd:smart00828 138 RVV 140
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
181-277 7.84e-07

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 47.04  E-value: 7.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 181 IVDFGCGNALYLCTLAkELGDIKAVGIEPDTSAYEAgLKKVAEMGLQDQVRLVNVDALD--YEIDEQPDFILFGFVLQEI 258
Cdd:cd02440    2 VLDLGCGTGALALALA-SGPGARVTGVDISPVALEL-ARKAAAALLADNVEVLKGDAEElpPEADESFDVIISDPPLHHL 79
                         90
                 ....*....|....*....
gi 490679508 259 IAqiGRPAFIEYLRKLGRK 277
Cdd:cd02440   80 VE--DLARFLEEARRLLKP 96
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
181-276 4.05e-06

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 44.86  E-value: 4.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  181 IVDFGCGNALYLCTLAKELGdIKAVGIEPDTSAYEAGLKKVAEMGLqdQVRLVNVDALDYEIDEQP-DFILFGFVLQEii 259
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGL--NVEFVQGDAEDLPFPDGSfDLVVSSGVLHH-- 75
                          90
                  ....*....|....*..
gi 490679508  260 aqIGRPAFIEYLRKLGR 276
Cdd:pfam13649  76 --LPDPDLEAALREIAR 90
 
Name Accession Description Interval E-value
ketoArg_3Met TIGR04543
2-ketoarginine methyltransferase; This SAM-dependent C-methyltransferase performs the middle ...
35-360 1.93e-100

2-ketoarginine methyltransferase; This SAM-dependent C-methyltransferase performs the middle step of a three step conversion from arginine to beta-methylarginine. It performs a C-methylation at position 3 of 5-guanidino-2-oxopentanoic acid (keto-arginine). An aminotransferase converts arginine to 5-guanidino-2-oxopentanoic acid, and later converts 5-guanidino-3-methyl-2-oxopentanoic acid to beta-methylarginine.


Pssm-ID: 275336 [Multi-domain]  Cd Length: 331  Bit Score: 300.43  E-value: 1.93e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   35 LDYVKGFVGAKVIFQMLKLGVFDDLLAG--KTLEEIASGRSLDPYLLRTVFEYLSVEGLLVKEGrgggASFRLSDYGSRI 112
Cdd:TIGR04543   4 IQPIRGFVLAQAIYHLFESGLFDELAEAgpRSVGELAEELGLDSDRLTGFLRYLANEGIVVESD----GVFSLTEKGREL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  113 KHYEGWFNILIGGYDNIFSNIGAMLEEGIGGYKRDGKWVGVGSCQISKYDTIPITKAFIESVKPDAKQIVDFGCGNALYL 192
Cdd:TIGR04543  80 AEFRPWYELLVGGYGETFLQLGEVLQQGAGWASRDGTKVGIGSCGISHYDAIPLVRSLLARLPGAPASLVDLGCGDGRFL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  193 CTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDY---EIDEQPDFILFGFVLQEIIAQIGRPAFIE 269
Cdd:TIGR04543 160 ADFCEALPEISAIGVDPDAGSYRAARALIRERGLADRVSLVNAGAEDFlrsDLGSGPDFFVLGFVLQEILGQEGRGAVVG 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  270 YLRKLGRKFADSYLMVMEVDYDIDNREVMHSPMGRGYYNPYFLLHPFTNQLLLPKREWDEIFAQAGYDVVRDEVTSPKAD 349
Cdd:TIGR04543 240 FLRTILARFPDAHLIVIEVDHRPDDPAVMRHGLGLAYYNPYYLLHYFTEQRLETDAFWEELFAEAGLSVVAKLTTDPEVD 319
                         330
                  ....*....|.
gi 490679508  350 PSGFGICYVLK 360
Cdd:TIGR04543 320 STGLELGYLLR 330
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
174-276 1.00e-11

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 62.64  E-value: 1.00e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 174 VKPDAKqIVDFGCGNALYLCTLAKELGdIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDYEIDEQPDFIlfgf 253
Cdd:COG2230   49 LKPGMR-VLDIGCGWGGLALYLARRYG-VRVTGVTLSPEQLEYARERAAEAGLADRVEVRLADYRDLPADGQFDAI---- 122
                         90       100
                 ....*....|....*....|...
gi 490679508 254 VLQEIIAQIGRPAFIEYLRKLGR 276
Cdd:COG2230  123 VSIGMFEHVGPENYPAYFAKVAR 145
PKS_MT smart00828
Methyltransferase in polyketide synthase (PKS) enzymes;
179-339 1.05e-08

Methyltransferase in polyketide synthase (PKS) enzymes;


Pssm-ID: 214839 [Multi-domain]  Cd Length: 224  Bit Score: 55.11  E-value: 1.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   179 KQIVDFGCGNALYLCTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDyeiDEQPDF--ILFGFvlq 256
Cdd:smart00828   1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK---DPFPDTydLVFGF--- 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508   257 EIIAQIGRPAfiEYLRKLGRKFADSYLMVMEvdydidnrEVMHSPMGRgyynpyfLLHPFTNQLLLPKREWDEIFAQAGY 336
Cdd:smart00828  75 EVIHHIKDKM--DLFSNISRHLKDGGHLVLA--------DFIANLLSA-------IEHEETTSYLVTREEWAELLARNNL 137

                   ...
gi 490679508   337 DVV 339
Cdd:smart00828 138 RVV 140
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
178-256 6.59e-07

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 47.13  E-value: 6.59e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490679508 178 AKQIVDFGCGNALYLCTLAKELGDIKAVGIEPDTSAYEAGLKKVAemglqdQVRLVNVDALDYEIDEQPDFILFGFVLQ 256
Cdd:COG4106    2 PRRVLDLGCGTGRLTALLAERFPGARVTGVDLSPEMLARARARLP------NVRFVVADLRDLDPPEPFDLVVSNAALH 74
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
181-277 7.84e-07

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 47.04  E-value: 7.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 181 IVDFGCGNALYLCTLAkELGDIKAVGIEPDTSAYEAgLKKVAEMGLQDQVRLVNVDALD--YEIDEQPDFILFGFVLQEI 258
Cdd:cd02440    2 VLDLGCGTGALALALA-SGPGARVTGVDISPVALEL-ARKAAAALLADNVEVLKGDAEElpPEADESFDVIISDPPLHHL 79
                         90
                 ....*....|....*....
gi 490679508 259 IAqiGRPAFIEYLRKLGRK 277
Cdd:cd02440   80 VE--DLARFLEEARRLLKP 96
UbiG COG2227
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ...
169-276 1.13e-06

2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 441829 [Multi-domain]  Cd Length: 126  Bit Score: 47.32  E-value: 1.13e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 169 AFIESVKPDAKQIVDFGCGNALYLCTLAkELGdIKAVGIEPDTSAYEAGLKKVAEMGlqdqVRLVNVDALDYEI-DEQPD 247
Cdd:COG2227   16 ALLARLLPAGGRVLDVGCGTGRLALALA-RRG-ADVTGVDISPEALEIARERAAELN----VDFVQGDLEDLPLeDGSFD 89
                         90       100
                 ....*....|....*....|....*....
gi 490679508 248 FILFGFVLQEIiaqigrPAFIEYLRKLGR 276
Cdd:COG2227   90 LVICSEVLEHL------PDPAALLRELAR 112
Methyltransf_25 pfam13649
Methyltransferase domain; This family appears to be a methyltransferase domain.
181-276 4.05e-06

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 463945 [Multi-domain]  Cd Length: 96  Bit Score: 44.86  E-value: 4.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  181 IVDFGCGNALYLCTLAKELGdIKAVGIEPDTSAYEAGLKKVAEMGLqdQVRLVNVDALDYEIDEQP-DFILFGFVLQEii 259
Cdd:pfam13649   1 VLDLGCGTGRLTLALARRGG-ARVTGVDLSPEMLERARERAAEAGL--NVEFVQGDAEDLPFPDGSfDLVVSSGVLHH-- 75
                          90
                  ....*....|....*..
gi 490679508  260 aqIGRPAFIEYLRKLGR 276
Cdd:pfam13649  76 --LPDPDLEAALREIAR 90
dimerization2 pfam16864
dimerization domain; This domain, found in methyltransferases, functions as a dimerization ...
35-107 5.70e-06

dimerization domain; This domain, found in methyltransferases, functions as a dimerization domain.


Pssm-ID: 465287  Cd Length: 87  Bit Score: 44.09  E-value: 5.70e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490679508   35 LDYVKGFVGAKVIFQMLKLGVFDDLLAG-KTLEEIASGRSLDPYLLRTVFEYLSVEGLLVKEGRGGGASFRLSD 107
Cdd:pfam16864   2 LDLIDGFRASKVLFTACELGVFDLLAEGpLSAEEVAARLGASVDGTERLLDACVALGLLEREKTDGKGLYSNTE 75
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
159-258 7.08e-06

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 45.37  E-value: 7.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 159 SKYDTipiTKAFIESVKPDA-KQIVDFGCGNALYLCTLAKELGDIkaVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDA 237
Cdd:COG2226    6 ARYDG---REALLAALGLRPgARVLDLGCGTGRLALALAERGARV--TGVDISPEMLELARERAAEAGLNVEFVVGDAED 80
                         90       100
                 ....*....|....*....|.
gi 490679508 238 LDYEiDEQPDFILFGFVLQEI 258
Cdd:COG2226   81 LPFP-DGSFDLVISSFVLHHL 100
SmtA COG0500
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ...
176-256 1.36e-04

SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];


Pssm-ID: 440266 [Multi-domain]  Cd Length: 199  Bit Score: 42.60  E-value: 1.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508 176 PDAKQIVDFGCGNALYLCTLAKELGDiKAVGIEPDTSAYEAGLKKVAEMGLqDQVRLVNVDALDYEIDEQP--DFILFGF 253
Cdd:COG0500   25 PKGGRVLDLGCGTGRNLLALAARFGG-RVIGIDLSPEAIALARARAAKAGL-GNVEFLVADLAELDPLPAEsfDLVVAFG 102

                 ...
gi 490679508 254 VLQ 256
Cdd:COG0500  103 VLH 105
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
176-247 1.90e-04

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 42.44  E-value: 1.90e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490679508 176 PDAKQIVDFGCGN-ALYLCtLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNVDALDYEIDEQPD 247
Cdd:COG4123   36 KKGGRVLDLGTGTgVIALM-LAQRSPGARITGVEIQPEAAELARRNVALNGLEDRITVIHGDLKEFAAELPPG 107
Methyltransf_23 pfam13489
Methyltransferase domain; This family appears to be a methyltransferase domain.
175-339 2.15e-04

Methyltransferase domain; This family appears to be a methyltransferase domain.


Pssm-ID: 404385 [Multi-domain]  Cd Length: 162  Bit Score: 41.26  E-value: 2.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  175 KPDAKQIVDFGCGNAlYLCTLAKELGdIKAVGIEPDTSAYEAGLKKVAEMGLQDQVRLVNvdaldyeiDEQPDFILFGFV 254
Cdd:pfam13489  20 LPSPGRVLDFGCGTG-IFLRLLRAQG-FSVTGVDPSPIAIERALLNVRFDQFDEQEAAVP--------AGKFDVIVAREV 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490679508  255 LQEIiaqigrPAFIEYLRKLGRKFA-DSYLMVMEVDYDIDNREVMHspmgrgyYNPYfLLHPFTNQLLLPKREWDEIFAQ 333
Cdd:pfam13489  90 LEHV------PDPPALLRQIAALLKpGGLLLLSTPLASDEADRLLL-------EWPY-LRPRNGHISLFSARSLKRLLEE 155

                  ....*.
gi 490679508  334 AGYDVV 339
Cdd:pfam13489 156 AGFEVV 161
Methyltransf_12 pfam08242
Methyltransferase domain; Members of this family are SAM dependent methyltransferases.
182-256 3.17e-04

Methyltransferase domain; Members of this family are SAM dependent methyltransferases.


Pssm-ID: 400515 [Multi-domain]  Cd Length: 98  Bit Score: 39.66  E-value: 3.17e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490679508  182 VDFGCGNALYLCTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQD--QVRLVNVDALDYEiDEQPDFILFGFVLQ 256
Cdd:pfam08242   1 LEIGCGTGTLLRALLEALPGLEYTGLDISPAALEAARERLAALGLLNavRVELFQLDLGELD-PGSFDVVVASNVLH 76
Methyltransf_4 pfam02390
Putative methyltransferase; This is a family of putative methyltransferases. The aligned ...
177-240 7.13e-03

Putative methyltransferase; This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.


Pssm-ID: 367068  Cd Length: 173  Bit Score: 36.88  E-value: 7.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490679508  177 DAKQIVDFGCGNALYLCTLAKELGDIKAVGIEPDTSAYEAGLKKVAEMGLQDqVRLVNVDALDY 240
Cdd:pfam02390   1 DAPVFLEIGCGMGGFLVAMAKANPDKNFIGIEIRVPGVAKALKKIDALGLQN-LRILCGNALDV 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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