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Conserved domains on  [gi|490726233|ref|WP_004588741|]
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MULTISPECIES: TIGR02647 family protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5669 pfam18918
Family of unknown function (DUF5669); This is a family of unknown function. Family members are ...
 1-76 3.91e-36

Family of unknown function (DUF5669); This is a family of unknown function. Family members are mostly found in gammaproteobacteria.


:

Pssm-ID: 465910  Cd Length: 76  Bit Score: 116.38  E-value: 3.91e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490726233   1 MQFNQTMIDEFTLLAKFPRESKMQGIKLHSDAEPNLLSAAQRLFDKGVIDSPDGGYLTELGLDLIEHVSVIHCALK 76
Cdd:pfam18918  1 MPFTPELIAELNLLLQFDLSSTQEGIKVHHDASPELIAAAQRLFDKGLITQPDGGYLTDLGREAAEHAQALLTILT 76
 
Name Accession Description Interval E-value
DUF5669 pfam18918
Family of unknown function (DUF5669); This is a family of unknown function. Family members are ...
 1-76 3.91e-36

Family of unknown function (DUF5669); This is a family of unknown function. Family members are mostly found in gammaproteobacteria.


Pssm-ID: 465910  Cd Length: 76  Bit Score: 116.38  E-value: 3.91e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490726233   1 MQFNQTMIDEFTLLAKFPRESKMQGIKLHSDAEPNLLSAAQRLFDKGVIDSPDGGYLTELGLDLIEHVSVIHCALK 76
Cdd:pfam18918  1 MPFTPELIAELNLLLQFDLSSTQEGIKVHHDASPELIAAAQRLFDKGLITQPDGGYLTDLGREAAEHAQALLTILT 76
DNA TIGR02647
TIGR02647 family protein; Members of this family are found, so far, only in the ...
 1-76 1.90e-23

TIGR02647 family protein; Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein. [Hypothetical proteins, Conserved]


Pssm-ID: 131695  Cd Length: 77  Bit Score: 84.15  E-value: 1.90e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490726233   1 MQFNQTMIDEFTLLAKFPRESKMQGIKLHSDAEPNLLSAAQRLFDKGVIDSPDGGYLTELGLDLIEHVSVIHCALK 76
Cdd:TIGR02647  1 MKYTPELIAELELLALFNLSSTQEGIKVHSTASPAAVAAAARLHEKGLTTQPDGGYLTSLGLEAAEHAQKLLTILS 76
 
Name Accession Description Interval E-value
DUF5669 pfam18918
Family of unknown function (DUF5669); This is a family of unknown function. Family members are ...
 1-76 3.91e-36

Family of unknown function (DUF5669); This is a family of unknown function. Family members are mostly found in gammaproteobacteria.


Pssm-ID: 465910  Cd Length: 76  Bit Score: 116.38  E-value: 3.91e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490726233   1 MQFNQTMIDEFTLLAKFPRESKMQGIKLHSDAEPNLLSAAQRLFDKGVIDSPDGGYLTELGLDLIEHVSVIHCALK 76
Cdd:pfam18918  1 MPFTPELIAELNLLLQFDLSSTQEGIKVHHDASPELIAAAQRLFDKGLITQPDGGYLTDLGREAAEHAQALLTILT 76
DNA TIGR02647
TIGR02647 family protein; Members of this family are found, so far, only in the ...
 1-76 1.90e-23

TIGR02647 family protein; Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein. [Hypothetical proteins, Conserved]


Pssm-ID: 131695  Cd Length: 77  Bit Score: 84.15  E-value: 1.90e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490726233   1 MQFNQTMIDEFTLLAKFPRESKMQGIKLHSDAEPNLLSAAQRLFDKGVIDSPDGGYLTELGLDLIEHVSVIHCALK 76
Cdd:TIGR02647  1 MKYTPELIAELELLALFNLSSTQEGIKVHSTASPAAVAAAARLHEKGLTTQPDGGYLTSLGLEAAEHAQKLLTILS 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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