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Conserved domains on  [gi|490726406|ref|WP_004588905|]
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MULTISPECIES: hypothetical protein [Pseudoalteromonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SmpA_OmlA super family cl46449
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 1-42 4.69e-08

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


The actual alignment was detected with superfamily member COG2913:

Pssm-ID: 480789  Cd Length: 128  Bit Score: 46.57  E-value: 4.69e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490726406   1 MKK----LLIIAATLSLAACSK------------VSLENYEKIEVGMDKAEVEAILGS 42
Cdd:COG2913    1 MRKlrllLLALLLALLLAGCSSfvykidiqqgnvVTQEDLAQLKPGMTKEQVRYLLGT 58
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-42 4.69e-08

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 46.57  E-value: 4.69e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490726406   1 MKK----LLIIAATLSLAACSK------------VSLENYEKIEVGMDKAEVEAILGS 42
Cdd:COG2913    1 MRKlrllLLALLLALLLAGCSSfvykidiqqgnvVTQEDLAQLKPGMTKEQVRYLLGT 58
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 19-42 2.09e-03

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 33.32  E-value: 2.09e-03
                         10        20
                 ....*....|....*....|....
gi 490726406  19 VSLENYEKIEVGMDKAEVEAILGS 42
Cdd:pfam04355  3 VTQEDVDQLKPGMTREQVRYLLGT 26
 
Name Accession Description Interval E-value
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
 1-42 4.69e-08

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 46.57  E-value: 4.69e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490726406   1 MKK----LLIIAATLSLAACSK------------VSLENYEKIEVGMDKAEVEAILGS 42
Cdd:COG2913    1 MRKlrllLLALLLALLLAGCSSfvykidiqqgnvVTQEDLAQLKPGMTKEQVRYLLGT 58
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
 19-42 2.09e-03

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 33.32  E-value: 2.09e-03
                         10        20
                 ....*....|....*....|....
gi 490726406  19 VSLENYEKIEVGMDKAEVEAILGS 42
Cdd:pfam04355  3 VTQEDVDQLKPGMTREQVRYLLGT 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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