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Conserved domains on  [gi|490920229|ref|WP_004782101|]
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MULTISPECIES: type IV pilus biogenesis/stability protein PilW [Acinetobacter]

Protein Classification

type IV pilus biogenesis/stability protein PilF/PilW( domain architecture ID 11494436)

type IV pilus biogenesis/stability protein PilF/PilW is an outer membrane lipoprotein that is required for multimerization and localization of type IV pilus secretin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 12-246 8.41e-74

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


:

Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 224.91  E-value: 8.41e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   12 SVVCGSLVLTACQTP-----DLGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGs 86
Cdd:TIGR02521   1 LALVFLLALTGCVTTpdvprSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   87 kpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDLANAEKS 166
Cdd:TIGR02521  80 --ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  167 FKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFVRgvgQKNQSARALWIGIRTARASGDQLGMQVLVNQLRALFP 246
Cdd:TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ---TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
 
Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 12-246 8.41e-74

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 224.91  E-value: 8.41e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   12 SVVCGSLVLTACQTP-----DLGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGs 86
Cdd:TIGR02521   1 LALVFLLALTGCVTTpdvprSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   87 kpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDLANAEKS 166
Cdd:TIGR02521  80 --ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  167 FKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFVRgvgQKNQSARALWIGIRTARASGDQLGMQVLVNQLRALFP 246
Cdd:TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ---TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-257 5.34e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.10  E-value: 5.34e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  30 QKDPEkATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQ 109
Cdd:COG2956   36 ELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG---LLDRAEELLEKLLELDPDDAE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 110 ARNNYGTYLYQLERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFY 189
Cdd:COG2956  112 ALRLLAEIYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229 190 LNQQFPAATQMYEQFVRgvgQKNQSARALWIGIRTARASGDQLGMQVLVNQLRALFPESPEYQRYLQL 257
Cdd:COG2956  190 EQGDYEEAIAALERALE---QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 48-206 2.31e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 51.62  E-value: 2.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   48 LKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKPnleKAEGYFKRAISADPKnaqaRNNYGTY--LYQLERYK 125
Cdd:PRK11447  280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA---RAVAQFEKALALDPH----SSNRDKWesLLKVNRYW 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  126 DAIEQFEIAgatlgydqrfralenmgriyLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFV 205
Cdd:PRK11447  353 LLIQQGDAA--------------------LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412


                  .
gi 490920229  206 R 206
Cdd:PRK11447  413 R 413
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 42-134 2.54e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 47.62  E-value: 2.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKnaqarNNYGTYLY-- 119
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELG---DVEEAREVLLRAIELDPD-----GGYEKYLYlg 76

                         90
                 ....*....|....*
gi 490920229 120 QLERYKDAIEQFEIA 134
Cdd:cd24142   77 QLSGGEEALQYYEKG 91
TPR_12 pfam13424
Tetratricopeptide repeat;
108-176 4.38e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 4.38e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490920229  108 AQARNNYGTYLYQLERYKDAIEQF----EIAGATLGYD--QRFRALENMGRIYLKQGDLANAEKSFKQALQANRA 176
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLekalEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 144-175 1.64e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 1.64e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 490920229   144 FRALENMGRIYLKQGDLANAEKSFKQALQANR 175
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
 
Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 12-246 8.41e-74

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 224.91  E-value: 8.41e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   12 SVVCGSLVLTACQTP-----DLGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGs 86
Cdd:TIGR02521   1 LALVFLLALTGCVTTpdvprSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   87 kpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDLANAEKS 166
Cdd:TIGR02521  80 --ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  167 FKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFVRgvgQKNQSARALWIGIRTARASGDQLGMQVLVNQLRALFP 246
Cdd:TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ---TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-257 5.34e-22

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.10  E-value: 5.34e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  30 QKDPEkATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQ 109
Cdd:COG2956   36 ELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG---LLDRAEELLEKLLELDPDDAE 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 110 ARNNYGTYLYQLERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFY 189
Cdd:COG2956  112 ALRLLAEIYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYL 189

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229 190 LNQQFPAATQMYEQFVRgvgQKNQSARALWIGIRTARASGDQLGMQVLVNQLRALFPESPEYQRYLQL 257
Cdd:COG2956  190 EQGDYEEAIAALERALE---QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
32-258 5.72e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 86.21  E-value: 5.72e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  32 DPEKATkVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQAR 111
Cdd:COG0457    4 DPDDAE-AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG---RYEEALADYEQALELDPDDAEAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 112 NNYGTYLYQLERYKDAIEQFEIAGATLGYDqrFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLN 191
Cdd:COG0457   80 NNLGLALQALGRYEEALEDYDKALELDPDD--AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490920229 192 QQFPAATQMYEQFVRGVGQKNQSARALWIGIRTARASGDQLGMQVLVNQLRALFPESPEYQRYLQLQ 258
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 40-172 8.22e-20

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.51  E-value: 8.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  40 RTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLY 119
Cdd:COG3914   81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG---RLEEALAALRRALALNPDFAEAYLNLGEALR 157

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490920229 120 QLERYKDAIEQFEIAgatLGYD-QRFRALENMGRIYLKQGDLANAEKSFKQALQ 172
Cdd:COG3914  158 RLGRLEEAIAALRRA---LELDpDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-257 1.11e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.94  E-value: 1.11e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQL 121
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRG---EYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 122 ERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMY 201
Cdd:COG2956   90 GLLDRAEELLEKLLEL--DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 490920229 202 EQFVRgvgQKNQSARALWIGIRTARASGDqlgMQVLVNQLRALFPESPEYQRYLQL 257
Cdd:COG2956  168 EKALK---LDPDCARALLLLAELYLEQGD---YEEAIAALERALEQDPDYLPALPR 217
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 39-174 1.37e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 82.16  E-value: 1.37e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  39 VRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYL 118
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG---DLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 490920229 119 YQLERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQGDLANAEKSFKQALQAN 174
Cdd:COG4783   83 LKAGDYDEALALLEKALKL--DPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
42-232 4.18e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.12  E-value: 4.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQL 121
Cdd:COG0457   47 NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG---RYEEALEDYDKALELDPDDAEALYNLGLALLEL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 122 ERYKDAIEQFEIAgatLGYDQRF-RALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQM 200
Cdd:COG0457  124 GRYDEAIEAYERA---LELDPDDaDALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200

                        170       180       190
                 ....*....|....*....|....*....|..
gi 490920229 201 YEQFVRGVGQKNQSARALWIGIRTARASGDQL 232
Cdd:COG0457  201 LALEQALRKKLAILTLAALAELLLLALALLLA 232
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-203 2.11e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 2.11e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  64 LETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDqr 143
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLG---RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-- 75

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 144 FRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQ 203
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 30-150 5.96e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 69.65  E-value: 5.96e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  30 QKDPEKAtKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQ 109
Cdd:COG4235   11 AANPNDA-EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG---DTEEAEELLERALALDPDNPE 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 490920229 110 ARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENM 150
Cdd:COG4235   87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 56-177 4.39e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 67.34  E-value: 4.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  56 AKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAg 135
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLG---RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA- 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 490920229 136 atLGYD-QRFRALENMGRIYLKQGDLANAEKSFKQALQANRAS 177
Cdd:COG4235   78 --LALDpDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 40-244 8.99e-14

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.79  E-value: 8.99e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  40 RTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLY 119
Cdd:COG3914   47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALG---RYEEALALYRRALALNPDNAEALFNLGNLLL 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 120 QLERYKDAIEQFEIAgatLGYDQRF-RALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAAT 198
Cdd:COG3914  124 ALGRLEEALAALRRA---LALNPDFaEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 490920229 199 QMYEQFVRgVGQKNQSARALWigIRTARASGDQLGMQVLVNQLRAL 244
Cdd:COG3914  201 AAYRRALE-LDPDNADAHSNL--LFALRQACDWEVYDRFEELLAAL 243
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-172 9.51e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 65.71  E-value: 9.51e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQL 121
Cdd:COG4785   78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG---DYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490920229 122 ERYKDAIEQFE-----------------IAGATLGYDQ-RFRALENMGRIYLKQGDLANAEKSFKQALQ 172
Cdd:COG4785  155 GRYELAIADLEkaleldpndperalwlyLAERKLDPEKaLALLLEDWATAYLLQGDTEEARELFKLALA 223
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 40-206 1.45e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 67.42  E-value: 1.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   40 RTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLY 119
Cdd:TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG---DFEKAAEYLAKATELDPENAAARTQLGISKL 408

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  120 QLERYKDAIEQFEIAGAT------------LGYDQRFR------ALEN--------------MGRIYLKQGDLANAEKSF 167
Cdd:TIGR02917 409 SQGDPSEAIADLETAAQLdpelgradllliLSYLRSGQfdkalaAAKKlekkqpdnaslhnlLGAIYLGKGDLAKAREAF 488

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 490920229  168 KQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFVR 206
Cdd:TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
89-178 4.15e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.95  E-value: 4.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  89 NLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIeQFEIAgatLGYDQRF-RALENMGRIYLKQGDLANAEKSF 167
Cdd:COG3063    7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKA---LKLDPNNaEALLNLAELLLELGDYDEALAYL 82

                         90
                 ....*....|.
gi 490920229 168 KQALQANRASY 178
Cdd:COG3063   83 ERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
47-134 3.74e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.26  E-value: 3.74e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  47 YLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGyFKRAISADPKNAQARNNYGTYLYQLERYKD 126
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG---RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77


                 ....*...
gi 490920229 127 AIEQFEIA 134
Cdd:COG3063   78 ALAYLERA 85
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
30-174 5.34e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.00  E-value: 5.34e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  30 QKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALE------TNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISA 103
Cdd:COG4785   26 LAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGVAYDSLG---DYDLAIADFDQALEL 102

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490920229 104 DPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLgyDQRFRALENMGRIYLKQGDLANAEKSFKQALQAN 174
Cdd:COG4785  103 DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--PDYAYAYLNRGIALYYLGRYELAIADLEKALELD 171
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-203 2.93e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 57.40  E-value: 2.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   14 VCGSLVLTACqtpdlGQKDPEKATKVrtqlAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKPNLEKA 93
Cdd:TIGR02917   8 LCIALALSAC-----GDQSPEELIEA----AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKE 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   94 egyFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEiAGATLGYDQRFRALENMGRIYLKQGDLANAEKSFKQALQA 173
Cdd:TIGR02917  79 ---LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP-GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154

                         170       180       190
                  ....*....|....*....|....*....|
gi 490920229  174 NRASYISMLELAEIFYLNQQFPAATQMYEQ 203
Cdd:TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDE 184
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-205 6.03e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 6.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   28 LGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQqegSKPNLEKAEGYFKRAISADPKN 107
Cdd:TIGR02917 150 QALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL---SLGNIELALAAYRKAIALRPNN 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  108 AQARNNYGTYLYQLERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEI 187
Cdd:TIGR02917 227 IAVLLALATILIEAGEFEEAEKHADALLKK--APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304

                         170
                  ....*....|....*...
gi 490920229  188 FYLNQQFPAATQMYEQFV 205
Cdd:TIGR02917 305 EYQLGNLEQAYQYLNQIL 322
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 89-174 1.60e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.66  E-value: 1.60e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  89 NLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQrfRALENMGRIYLKQGDLANAEKSFK 168
Cdd:COG5010   69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQ 146


                 ....*.
gi 490920229 169 QALQAN 174
Cdd:COG5010  147 RALGTS 152
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 48-206 2.31e-07

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 51.62  E-value: 2.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   48 LKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKPnleKAEGYFKRAISADPKnaqaRNNYGTY--LYQLERYK 125
Cdd:PRK11447  280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA---RAVAQFEKALALDPH----SSNRDKWesLLKVNRYW 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  126 DAIEQFEIAgatlgydqrfralenmgriyLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQFV 205
Cdd:PRK11447  353 LLIQQGDAA--------------------LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412


                  .
gi 490920229  206 R 206
Cdd:PRK11447  413 R 413
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-203 3.14e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 3.14e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   28 LGQKDPEKATK--------------VRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKpnlEKA 93
Cdd:TIGR02917 476 LGKGDLAKAREafekalsiepdffpAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE---EEA 552

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   94 EGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEiaGATLGYDQRFRALENMGRIYLKQGDLANAEKSFKQALQA 173
Cdd:TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN--EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630

                         170       180       190
                  ....*....|....*....|....*....|
gi 490920229  174 NRASYISMLELAEIFYLNQQFPAATQMYEQ 203
Cdd:TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKR 660
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-206 3.26e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 3.26e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   43 LAVEYLKNGDLDSAKRALDQALETNPRDSQANMmmgVLLQQEGSKPNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLE 122
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALL---LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  123 RYKDAIEQFEIAGATLGYDQRFRALEnmGRIYLKQGDLANAEKSFKQALQANRASYISMLeLAEIFYLNQQFPAATQMYE 202
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELE--GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLE 760


                  ....
gi 490920229  203 QFVR 206
Cdd:TIGR02917 761 AWLK 764
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-176 6.85e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 50.08  E-value: 6.85e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   24 QTPDLGQKDPEKATKVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISA 103
Cdd:TIGR02917 112 ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN---RFDEARALIDEVLTA 188

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229  104 DPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDLANAE-----KSFKQALQANRA 176
Cdd:TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHadallKKAPNSPLAHYL 266
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 38-170 1.18e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 1.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   38 KVRTQLAVEYLK------NGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQAR 111
Cdd:TIGR02917 256 KAPNSPLAHYLKalvdfqKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG---NLEQAYQYLNQILKYAPNSHQAR 332

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  112 NNYGTYLYQLERYKDAIEQfeiAGATLGYDQRFRALENM-GRIYLKQGDLANAEKSFKQA 170
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAIAT---LSPALGLDPDDPAALSLlGEAYLALGDFEKAAEYLAKA 389
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 56-203 1.26e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  56 AKRALDQALETNPRDSQANMMMGVLLQQEGSKPNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAG 135
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229 136 ATLGYDqrFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAATQMYEQ 203
Cdd:COG5010   82 QLDPNN--PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
103-231 1.56e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 1.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 103 ADPKNAQARNNYGTYLYQLERYKDAIEQFEIAgatLGYDQRF-RALENMGRIYLKQGDLANAEKSFKQALQANRASYISM 181
Cdd:COG4785   68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQA---LELDPDLaEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 490920229 182 LELAEIFYLNQQFPAATQMYEQFVRgvGQKNQSARALWIGIRTARASGDQ 231
Cdd:COG4785  145 LNRGIALYYLGRYELAIADLEKALE--LDPNDPERALWLYLAERKLDPEK 192
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 108-206 1.84e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 108 AQARNNYGTYLYQLERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQGDLANAEKSFKQALQANRASYISMLELAEI 187
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALEL--DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90
                 ....*....|....*....
gi 490920229 188 FYLNQQFPAATQMYEQFVR 206
Cdd:COG4783   82 LLKAGDYDEALALLEKALK 100
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 42-134 2.54e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 47.62  E-value: 2.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKnaqarNNYGTYLY-- 119
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELG---DVEEAREVLLRAIELDPD-----GGYEKYLYlg 76

                         90
                 ....*....|....*
gi 490920229 120 QLERYKDAIEQFEIA 134
Cdd:cd24142   77 QLSGGEEALQYYEKG 91
TPR_12 pfam13424
Tetratricopeptide repeat;
108-176 4.38e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 4.38e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490920229  108 AQARNNYGTYLYQLERYKDAIEQF----EIAGATLGYD--QRFRALENMGRIYLKQGDLANAEKSFKQALQANRA 176
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLekalEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 42-105 4.61e-06

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 47.11  E-value: 4.61e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADP 105
Cdd:PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDP 245
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 29-186 4.99e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.39  E-value: 4.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   29 GQKDPEKATkVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGV-----------------LLQQEGSKPNL- 90
Cdd:TIGR02917 390 TELDPENAA-ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILsylrsgqfdkalaaakkLEKKQPDNASLh 468

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   91 -------------EKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATlgYDQRFRALENMGRIYLKQ 157
Cdd:TIGR02917 469 nllgaiylgkgdlAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRT 546

                         170       180
                  ....*....|....*....|....*....
gi 490920229  158 GDLANAEKSFKQALQANRASYISMLELAE 186
Cdd:TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQ 575
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 42-184 1.05e-05

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 45.23  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKPNLEKAEGYFKRAISADPKN---AQARNNYGTYL 118
Cdd:COG2976   58 EQLLEALAAGDAAAAAAAAEKLIDDYGGTAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVL 137

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229 119 YQLERYKDAIEQFEIAGATlGYDQRFraLENMGRIYLKQGDLANAEKSFKQALQAN--RASYISMLEL 184
Cdd:COG2976  138 LAQKKYDEALATLDAVKPE-AFAALY--AELRGDILLAQGDKAEARAAYQKALAALpeDAPLRQLLQM 202
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 39-107 1.71e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 1.71e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490920229  39 VRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKN 107
Cdd:COG4783   74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG---RPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-187 2.81e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 2.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   43 LAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLE 122
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG---NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490920229  123 RYKDAIEQFEIAGATLGYDQRFRAleNMGRIYLKQGDLANAEKSFKQALQANRAS--YISMLELAEI 187
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPAL--ALAQYYLGKGQLKKALAILNEAADAAPDSpeAWLMLGRAQL 612
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 45-132 6.39e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 6.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  45 VEYLKNGDLDSAKRALDQALETNPRDS---QANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKN---AQARNNYGTYL 118
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALG---DYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSY 77

                         90
                 ....*....|....
gi 490920229 119 YQLERYKDAIEQFE 132
Cdd:COG1729   78 LELGDYDKARATLE 91
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
30-109 6.43e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 6.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  30 QKDPEKATkVRTQLAVEYLKNGDLDSAkRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQ 109
Cdd:COG3063   20 ELDPDNAD-ALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELG---DYDEALAYLERALELDPSALR 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 118-206 7.54e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 7.54e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 118 LYQLERYKDAIEQFE-IAGATLGYDQRFRALENMGRIYLKQGDLANAEKSFKQALQANRASYI---SMLELAEIFYLNQQ 193
Cdd:COG1729    3 LLKAGDYDEAIAAFKaFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82

                         90
                 ....*....|...
gi 490920229 194 FPAATQMYEQFVR 206
Cdd:COG1729   83 YDKARATLEELIK 95
TPR_12 pfam13424
Tetratricopeptide repeat;
142-203 1.85e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.29  E-value: 1.85e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  142 QRFRALENMGRIYLKQGDLANAEKSFKQALQANRASY--------ISMLELAEIFYLNQQFPAATQMYEQ 203
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLER 70
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 43-107 3.78e-04

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.04  E-value: 3.78e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490920229  43 LAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKP----NLEKAEGYF-------KRAISADPKN 107
Cdd:PRK02603  78 MGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAeeagDQDEAEALFdkaaeywKQAIRLAPNN 153
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-108 7.56e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 37.32  E-value: 7.56e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490920229   42 QLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSKPNLEKAEGYFKRAISADPKNA 108
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
30-132 9.46e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.48  E-value: 9.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  30 QKDPEkatkVRTQLAVEYLKNGDLDSAKRALDQALETNP--RDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPkN 107
Cdd:COG4700  121 ADDPH----ILLGLAQALFELGRYAEALETLEKLIAKNPdfKSSDAHLLYARALEALG---DLEAAEAELEALARRYS-G 192

                         90       100
                 ....*....|....*....|....*
gi 490920229 108 AQARNNYGTYLYQLERYKDAIEQFE 132
Cdd:COG4700  193 PEARYRYAKFLARQGRTAEAKELLE 217
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 152-253 1.07e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 1.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 152 RIYLKQGDLANAEKSFKQALQANRASYI---SMLELAEIFYLNQQFPAATQMYEQFVRGVGQKNQSARALWIGIRTARAS 228
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80

                         90       100
                 ....*....|....*....|....*
gi 490920229 229 GDQLGMQVLVNQLRALFPESPEYQR 253
Cdd:COG1729   81 GDYDKARATLEELIKKYPDSEAAKE 105
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
91-203 1.43e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 1.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  91 EKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDLANAEKSFKQA 170
Cdd:COG4785   20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99

                         90       100       110
                 ....*....|....*....|....*....|...
gi 490920229 171 LQANRASYISMLELAEIFYLNQQFPAATQMYEQ 203
Cdd:COG4785  100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDR 132
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 144-175 1.64e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 1.64e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 490920229   144 FRALENMGRIYLKQGDLANAEKSFKQALQANR 175
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
40-177 1.74e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 1.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  40 RTQLAVEYLKNGDLDSAKRALDQALETNPRDSQAnMMMGVLLQQEGSKpNLEKAEGYFKRAISADP--KNAQARNNYGTY 117
Cdd:COG4700   92 RVRLADALLELGRYDEAIELYEEALTGIFADDPH-ILLGLAQALFELG-RYAEALETLEKLIAKNPdfKSSDAHLLYARA 169

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490920229 118 LYQLERYKDAIEQFEIAGATL-GYDQRFRalenMGRIYLKQGDLANAEKSFKQALQANRAS 177
Cdd:COG4700  170 LEALGDLEAAEAELEALARRYsGPEARYR----YAKFLARQGRTAEAKELLEEILDEAKHM 226
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 38-134 2.35e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   38 KVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQA-NMMMGVLLQQEGSKpnlekAEGYFKRAISADPKNAQARNNYGT 116
Cdd:TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVlNNLAWLYLELKDPR-----ALEYAERALKLAPNIPAILDTLGW 845

                          90
                  ....*....|....*...
gi 490920229  117 YLYQLERYKDAIEQFEIA 134
Cdd:TIGR02917 846 LLVEKGEADRALPLLRKA 863
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 106-218 2.39e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  106 KNAQARNNYGTYLYQLeryKDAIEQFEiagatlgYDQRFRALenMGRIYLKQGDLANAEKSFKQALQANRASYISMLELA 185
Cdd:TIGR02917  30 KSYLQKNKYKAAIIQL---KNALQKDP-------NDAEARFL--LGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLA 97

                          90       100       110
                  ....*....|....*....|....*....|...
gi 490920229  186 EIFYLNQQFpaaTQMYEQFVRGVGQKNQSARAL 218
Cdd:TIGR02917  98 RAYLLQGKF---QQVLDELPGKTLLDDEGAAEL 127
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 82-231 2.51e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 38.64  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  82 QQEGSKPNLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFE------IAGATLgydqrfrALENMGRIYL 155
Cdd:PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALErveeqdPEYLSE-------VLPKLMECYQ 260

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229 156 KQGDLANAEKSFKQALQANrASYISMLELAEIFyLNQQFPAATQmyeQFVRGVGQKNQSARAL--WIGIRTARASGDQ 231
Cdd:PRK11788 261 ALGDEAEGLEFLRRALEEY-PGADLLLALAQLL-EEQEGPEAAQ---ALLREQLRRHPSLRGFhrLLDYHLAEAEEGR 333
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 51-134 3.05e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 38.81  E-value: 3.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229   51 GDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGSkpnLEKAEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQ 130
Cdd:TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS---IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489


                  ....
gi 490920229  131 FEIA 134
Cdd:TIGR00990 490 FDTA 493
TPR_17 pfam13431
Tetratricopeptide repeat;
96-129 4.03e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.06  E-value: 4.03e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 490920229   96 YFKRAISADPKNAQARNNYGTYLYQLERYKDAIE 129
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_8 pfam13181
Tetratricopeptide repeat;
145-176 4.05e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 4.05e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 490920229  145 RALENMGRIYLKQGDLANAEKSFKQALQANRA 176
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_7 pfam13176
Tetratricopeptide repeat;
146-178 4.96e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 34.05  E-value: 4.96e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 490920229  146 ALENMGRIYLKQGDLANAEKSFKQALQANRASY 178
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 126-227 5.63e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 37.68  E-value: 5.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  126 DAIEQFEIAGATLGYDQRFR---ALENMGRIYLKQGDLANAEKSFKQALQANR------ASYISMLELAEIFYLNQQFPA 196
Cdd:pfam17874  19 RALELAEQALALLPEDDLLArglATFVLGEAYLCLGDLDAALQAMREAEALARradsphVTLWALLQQGEILRAQGRLHQ 98

                          90       100       110
                  ....*....|....*....|....*....|.
gi 490920229  197 ATQMYEQFVRGVGQKNQSARALWIGIRTARA 227
Cdd:pfam17874  99 ALETYQQALQLARDHGLQHLPLHGFLLVGLA 129
TPR_1 pfam00515
Tetratricopeptide repeat;
145-174 6.26e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.55  E-value: 6.26e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 490920229  145 RALENMGRIYLKQGDLANAEKSFKQALQAN 174
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELN 31
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
153-247 7.18e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.15  E-value: 7.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229 153 IYLKQGDLANAEKSFKQALQANRASYISMLELAEIFYLNQQFPAAtqmyEQFVRGVGQKNQSARALWIGIRTARASGDQL 232
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA----IALEKALKLDPNNAEALLNLAELLLELGDYD 76

                         90
                 ....*....|....*
gi 490920229 233 GMQVLVNQLRALFPE 247
Cdd:COG3063   77 EALAYLERALELDPS 91
TPR_19 pfam14559
Tetratricopeptide repeat;
50-112 8.77e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 34.10  E-value: 8.77e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490920229   50 NGDLDSAKRALDQALETNPRDSQANMMMGVLLQQEGskpNLEKAEGYFKRAISADPKNAQARN 112
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALG---RLDEAEALLAALPAADPDDPRYAA 60
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 144-174 8.92e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 33.27  E-value: 8.92e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 490920229  144 FRALENMGRIYLKQGDLANAEKSFKQALQAN 174
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 93-206 9.63e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 36.09  E-value: 9.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  93 AEGYFKRAISADPKNAQARNNYGTYLYQLERYKDAIEQFEIAGATLGYDQRFRALENMGRIYLKQGDLANAEKSFKQALQ 172
Cdd:COG5010    3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 490920229 173 ANRASYISMLELAEIFYLNQQFPAATQMYEQFVR 206
Cdd:COG5010   83 LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 26-173 9.99e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 36.81  E-value: 9.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490920229  26 PDLGQKDPEkatkVRTQLAVEYLKNGDLDSAKRALDQALETNPRDSQANMMmgVLLQQEGSKPNLEKAEgyfkRAISADP 105
Cdd:COG3071  186 PRAERRDPE----LAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLY--GRLQGGDPAKQLKRAE----KWLKKHP 255

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490920229 106 KNAQARNNYGTYLYQLERYKDAIEQFEIAgatLGYDQRFRALENMGRIYLKQGDLANAEKSFKQALQA 173
Cdd:COG3071  256 NDPDLLLALGRLCLRNQLWGKAREYLEAA---LALRPSAEAYAELARLLEQLGDPEEAAEHYRKALAL 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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