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Conserved domains on  [gi|490926768|ref|WP_004788625|]
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LytR C-terminal domain-containing protein [Leptospira meyeri]

Protein Classification

LytR C-terminal domain-containing protein( domain architecture ID 10598501)

LytR C-terminal domain-containing protein similar to C-terminal domain of Mycobacterium tuberculosis tuberculin related peptide RV0431

CATH:  3.30.70.2390
PubMed:  21964069

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 295-380 1.71e-09

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


:

Pssm-ID: 463868  Cd Length: 87  Bit Score: 54.33  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490926768  295 RIEVLNGTPKNGLARYGKVLLNDKGLKVLSVDNAWDSSFKSSIILNRSGNTQyTDLISDTFQGRKVYFALRKDL-GLDAT 373
Cdd:pfam13399   2 RVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTTIIYGAAAAAA-ARALAAALGGGEIVVDDVLVAsTGDVT 80


                  ....*..
gi 490926768  374 VILGEDF 380
Cdd:pfam13399  81 VVLGKDF 87
 
Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 295-380 1.71e-09

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


Pssm-ID: 463868  Cd Length: 87  Bit Score: 54.33  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490926768  295 RIEVLNGTPKNGLARYGKVLLNDKGLKVLSVDNAWDSSFKSSIILNRSGNTQyTDLISDTFQGRKVYFALRKDL-GLDAT 373
Cdd:pfam13399   2 RVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTTIIYGAAAAAA-ARALAAALGGGEIVVDDVLVAsTGDVT 80


                  ....*..
gi 490926768  374 VILGEDF 380
Cdd:pfam13399  81 VVLGKDF 87
 
Name Accession Description Interval E-value
LytR_C pfam13399
LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus ...
 295-380 1.71e-09

LytR cell envelope-related transcriptional attenuator; This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family


Pssm-ID: 463868  Cd Length: 87  Bit Score: 54.33  E-value: 1.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490926768  295 RIEVLNGTPKNGLARYGKVLLNDKGLKVLSVDNAWDSSFKSSIILNRSGNTQyTDLISDTFQGRKVYFALRKDL-GLDAT 373
Cdd:pfam13399   2 RVAVLNGTGVPGLAARVADALRAAGFNVGEVGNAGNALEKTTIIYGAAAAAA-ARALAAALGGGEIVVDDVLVAsTGDVT 80


                  ....*..
gi 490926768  374 VILGEDF 380
Cdd:pfam13399  81 VVLGKDF 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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