|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-314 |
1.78e-94 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 282.77 E-value: 1.78e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 12 QNLGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQS-GIS 90
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGLP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 91 TIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDFvfQFLGKGQIFGIPFQVIL 170
Cdd:COG1172 97 ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAF--RALGQGSLLGIPVPVLI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 171 FIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAI 250
Cdd:COG1172 175 ALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAI 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490954361 251 AAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDRKRNK 314
Cdd:COG1172 255 AAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
16-313 |
8.24e-93 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 278.52 E-value: 8.24e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 16 TILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGISTIFAI 95
Cdd:PRK09512 21 SLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 96 IVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDF--VFQFLGKGQIFGIPFQVILFII 173
Cdd:PRK09512 101 PAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNadLFGWFGIGRPLGIPTPVWIMAI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 174 VYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAV 253
Cdd:PRK09512 181 VFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAV 260
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 254 VLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDRKRN 313
Cdd:PRK09512 261 VLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-309 |
6.15e-75 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 230.76 E-value: 6.15e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 49 INGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLM-QSGISTIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLAT 127
Cdd:cd06579 3 VLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLvNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTLGT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 128 MTIFRGLTLVLMDGRPIAGQrDDFVFQFLGKGQIFGIPFQVILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGIN 207
Cdd:cd06579 83 MFILRGLALLITGGRPISGL-PPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGIN 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 208 IAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLL 287
Cdd:cd06579 162 VRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLL 241
|
250 260
....*....|....*....|..
gi 490954361 288 GVSSFYQQIVKGIVILIAVLID 309
Cdd:cd06579 242 GVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
15-309 |
9.31e-48 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 164.17 E-value: 9.31e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 15 GTILALI-ILICFVSLLNPAFLQVSNLLNLMRQliiNGFV---ALGMTFVILTGGIDLSVGSTLALSSAIFAWLM-QSGI 89
Cdd:NF040906 6 GMLIALVaIVVLFQILTGGILLRPLNVTNLILQ---NSYIlilAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMvNWGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 90 STIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDF------------------ 151
Cdd:NF040906 83 PWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFqkissgflpdlfggtglh 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 152 --------------VFQ--------------------FLGKGQIF---------------GIPFQVILFIIVYLILWMLL 182
Cdd:NF040906 163 lltlllgvlaaaalVWSqlrgrrrrikyglevepmalFIAKLVLIaaailfftyllasyrGLPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 183 NKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTG 262
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 490954361 263 GSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLID 309
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
39-306 |
5.33e-22 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 93.09 E-value: 5.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 39 NLLNLMRQLIINGFVALGMTFVI-LTGGIDLSVGSTLALSSAIFAWLMQSGISTIF-AIIVAILLGVLLGLINGLLITKG 116
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWlALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 117 KLAPFIVTLATMTIFRGLTLVLMDGR---PIAGQRDDFVFQFLGKGQIFGIPFQVILFIIVYLILWMLLNKTSYGRKIFA 193
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGIlggEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 194 VGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPT-AGSAYEMDAIAAVVLGGTSMTGgsgsltGTLI 272
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGAGSPI------GVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 490954361 273 GILILGVLNN-GLNLLGVSSFYQQIVKGIVILIAV 306
Cdd:pfam02653 235 GSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-314 |
1.78e-94 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 282.77 E-value: 1.78e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 12 QNLGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQS-GIS 90
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAlGLP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 91 TIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDFvfQFLGKGQIFGIPFQVIL 170
Cdd:COG1172 97 ILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAF--RALGQGSLLGIPVPVLI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 171 FIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAI 250
Cdd:COG1172 175 ALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDAI 254
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490954361 251 AAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDRKRNK 314
Cdd:COG1172 255 AAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
16-313 |
8.24e-93 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 278.52 E-value: 8.24e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 16 TILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGISTIFAI 95
Cdd:PRK09512 21 SLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 96 IVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDF--VFQFLGKGQIFGIPFQVILFII 173
Cdd:PRK09512 101 PAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNadLFGWFGIGRPLGIPTPVWIMAI 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 174 VYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAV 253
Cdd:PRK09512 181 VFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAV 260
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 254 VLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDRKRN 313
Cdd:PRK09512 261 VLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-309 |
6.15e-75 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 230.76 E-value: 6.15e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 49 INGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLM-QSGISTIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLAT 127
Cdd:cd06579 3 VLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLvNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTLGT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 128 MTIFRGLTLVLMDGRPIAGQrDDFVFQFLGKGQIFGIPFQVILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGIN 207
Cdd:cd06579 83 MFILRGLALLITGGRPISGL-PPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGIN 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 208 IAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLL 287
Cdd:cd06579 162 VRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLL 241
|
250 260
....*....|....*....|..
gi 490954361 288 GVSSFYQQIVKGIVILIAVLID 309
Cdd:cd06579 242 GVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
12-314 |
1.93e-72 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 226.73 E-value: 1.93e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 12 QNLGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGIST 91
Cdd:COG4158 28 QAVGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 92 IFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQrdDFVFQFLGKGQIFGIPFQVILF 171
Cdd:COG4158 108 LLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNP--DLPFAWIGNGYLLGIPWLVVIA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 172 IIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPT-AGSAYEMDAI 250
Cdd:COG4158 186 LAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLqLGQGYELDAI 265
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490954361 251 AAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDRKRNK 314
Cdd:COG4158 266 AAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQR 329
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
14-314 |
6.87e-65 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 209.20 E-value: 6.87e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 14 LGTILALIILICFVSLLN-PAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLM-QSGIST 91
Cdd:COG4214 25 LGMIIALVVIWIVFQILTgGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMvNWGLPW 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 92 IFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQrdDFVFQFLGKGQI---------- 161
Cdd:COG4214 105 WLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPF--DPTFQAIGNGFLpdilgtlswv 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 162 ------------------------------------------------------FGIPFQVILFIIVYLILWMLLNKTSY 187
Cdd:COG4214 183 lgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyRGIPIVVLILLVLVVVYTFVLTRTVF 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 188 GRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTGGSGSL 267
Cdd:COG4214 263 GRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTV 342
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 490954361 268 TGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLID---RKRNK 314
Cdd:COG4214 343 YGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDvlsRRRRG 392
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
17-310 |
1.68e-57 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 187.67 E-value: 1.68e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 17 ILALIILIcFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGISTIFAII 96
Cdd:PRK09699 17 ILAIIVAI-FGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 97 V-AILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDFVFQFLGKgqIFGIPFQVILFIIVY 175
Cdd:PRK09699 96 IgGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAAS--VIGIPVPVIFSLIVA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 176 LILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVL 255
Cdd:PRK09699 174 LILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAII 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 490954361 256 GGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDR 310
Cdd:PRK09699 254 GGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDR 308
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
2-309 |
2.60e-56 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 185.48 E-value: 2.60e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 2 TNIKNRFKENqnlGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIF 81
Cdd:COG4211 7 KKIKNFLLNN---AIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAAVIS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 82 AWLMQSG------------ISTIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMD---GRPIAG 146
Cdd:COG4211 84 ASLLQSGdyagkffpnlpeLPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDrpgAQPIGG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 147 QRDDFVFQFLGKGQI--FGIPFQVILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAV 224
Cdd:COG4211 164 LDESFTNFAQGSINIggFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGALYG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 225 LSGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILI 304
Cdd:COG4211 244 FAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLIIIA 323
|
....*
gi 490954361 305 AVLID 309
Cdd:COG4211 324 AVALD 328
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
13-314 |
2.72e-50 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 169.47 E-value: 2.72e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 13 NLGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGISTI 92
Cdd:PRK11285 29 QYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLW 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 93 FAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDFvFQfLGKGQIFGIPFQVILFI 172
Cdd:PRK11285 109 LGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERF-FA-LGYANFFGVPAPIWLTV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 173 IVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAA 252
Cdd:PRK11285 187 ACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISA 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490954361 253 VVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLIDRKRNK 314
Cdd:PRK11285 267 CVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
15-309 |
9.31e-48 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 164.17 E-value: 9.31e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 15 GTILALI-ILICFVSLLNPAFLQVSNLLNLMRQliiNGFV---ALGMTFVILTGGIDLSVGSTLALSSAIFAWLM-QSGI 89
Cdd:NF040906 6 GMLIALVaIVVLFQILTGGILLRPLNVTNLILQ---NSYIlilAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMvNWGM 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 90 STIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDF------------------ 151
Cdd:NF040906 83 PWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFqkissgflpdlfggtglh 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 152 --------------VFQ--------------------FLGKGQIF---------------GIPFQVILFIIVYLILWMLL 182
Cdd:NF040906 163 lltlllgvlaaaalVWSqlrgrrrrikyglevepmalFIAKLVLIaaailfftyllasyrGLPNVLIILGVLILVYSFVT 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 183 NKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTG 262
Cdd:NF040906 243 NRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASG 322
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 490954361 263 GSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLID 309
Cdd:NF040906 323 GVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
3-309 |
9.95e-46 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 157.93 E-value: 9.95e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 3 NIKNRFKENqnlGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFA 82
Cdd:PRK09478 8 SFLTYLKEG---GIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 83 WLMQSG------------ISTIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMD---GRPIAGQ 147
Cdd:PRK09478 85 TLLQSMdnankvfpelatMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 148 RDDFVFQFLGKGQI--FGIPFQVILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVL 225
Cdd:PRK09478 165 DSGFSTFAQGFVALgsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAF 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 226 SGLVLTSRLNSAQPTAGSAYEMDAIAAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIA 305
Cdd:PRK09478 245 GGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFA 324
|
....
gi 490954361 306 VLID 309
Cdd:PRK09478 325 VALD 328
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
16-310 |
9.87e-34 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 125.84 E-value: 9.87e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 16 TILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLM-QSGISTIFA 94
Cdd:PRK11618 11 TIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIgDYGWSPLLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 95 IIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGL-TLVLMDGRPIA----GQRDDFVFQFLGKGQIFGIpfqVI 169
Cdd:PRK11618 91 FPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVsFLVSEESIPINhpfyDTLSSLAWKLPGGGRLSAM---AL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 170 LFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDA 249
Cdd:PRK11618 168 IMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDA 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490954361 250 IAAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLG-VSSFYQQIVKGIVILIAVLIDR 310
Cdd:PRK11618 248 IAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIVIGILLFVFIALQR 309
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
20-307 |
4.13e-29 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 113.77 E-value: 4.13e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 20 LIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGISTIFAIIVAI 99
Cdd:PRK15038 15 LVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 100 LLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRD----DFVFQFLGKGQIFGIPFQVILFIIVY 175
Cdd:PRK15038 95 LLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGMAGATGYEGiggfPMAFTDFANLDVLGLPVPLIIFLICL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 176 LILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVL 255
Cdd:PRK15038 175 LVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVL 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 490954361 256 GGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVL 307
Cdd:PRK15038 255 GGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
11-309 |
9.97e-27 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 107.51 E-value: 9.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 11 NQNLGTILALIILICFVSLLNPAFLQVSNLLNLMRQLIINGFVALGMTFVILTGGIDLSVGSTLALSSAIFAWLMQSGIS 90
Cdd:PRK15432 8 NRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 91 TIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAGQRDDFvfQFLGKGQIFGIPFQVIL 170
Cdd:PRK15432 88 LPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAEL--KQLSAPILLGISPIGWL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 171 FIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAI 250
Cdd:PRK15432 166 TLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAI 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 490954361 251 AAVVLGGTSMTGGSGSLTGTLIGILILGVLNNGLNLLGVSSFYQQIVKGIVILIAVLID 309
Cdd:PRK15432 246 AACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
39-306 |
5.33e-22 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 93.09 E-value: 5.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 39 NLLNLMRQLIINGFVALGMTFVI-LTGGIDLSVGSTLALSSAIFAWLMQSGISTIF-AIIVAILLGVLLGLINGLLITKG 116
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWlALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 117 KLAPFIVTLATMTIFRGLTLVLMDGR---PIAGQRDDFVFQFLGKGQIFGIPFQVILFIIVYLILWMLLNKTSYGRKIFA 193
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGIlggEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 194 VGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPT-AGSAYEMDAIAAVVLGGTSMTGgsgsltGTLI 272
Cdd:pfam02653 161 VGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGAGSPI------GVVI 234
|
250 260 270
....*....|....*....|....*....|....*
gi 490954361 273 GILILGVLNN-GLNLLGVSSFYQQIVKGIVILIAV 306
Cdd:pfam02653 235 GSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-306 |
9.08e-20 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 86.95 E-value: 9.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 49 INGFVALGMTFVILTGGI-DLSVGSTLALSSAIFAWLMQSGISTIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLAT 127
Cdd:cd06574 3 IYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 128 MTIFRGLTLVLMDGRPIAGQRDDFVFQFLGKGQIFG---IPFQVILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFIS 204
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGtlsIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 205 GINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEMDAIAAVVL--GGTSMTGGSGSLTGTLIGILILGVLNN 282
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIggAIVGRRTIKASILGVIIGAILYRIALA 242
|
250 260
....*....|....*....|....
gi 490954361 283 GLNLLGVSSFYQQIVKGIVILIAV 306
Cdd:cd06574 243 LALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
46-308 |
4.81e-09 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 56.22 E-value: 4.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 46 QLIINGF--------VALGMTFV-ILTGGIDLSVGSTLALSSAIFAWLMQS-GISTIFAIIVAILLGVLLGLINGLLI-- 113
Cdd:COG0559 6 QQLLNGLslgsiyalIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLlGLPLWLALLLAVLVAALLGVLLERLVir 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 114 ---TKGKLAPFIVTLATMTIFRGLTLVLMDGRPIAgqrddFVFQFLGKGQIFGIPFQVI-LFII-----VYLILWMLLNK 184
Cdd:COG0559 86 plrGAPPLALLLATIGLSLVLQGLVLLIFGADPRS-----FPALLSGSVELGGVSIPAYrLFIIvvalvLLAALWLFLRR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 185 TSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLnSAQPTAGSAYEMDAIAAVVLggtsmtGGS 264
Cdd:COG0559 161 TRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIY-SVSPTMGFLLGLKAFAAVVL------GGL 233
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 490954361 265 GSLTGTLIGILILGVLNNGLNLLgVSSFYQQIVkGIVILIAVLI 308
Cdd:COG0559 234 GSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVV-AFVLLILVLL 275
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
53-310 |
6.33e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 55.90 E-value: 6.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 53 VALGMTFVI-LTGGIDLSVGSTLALSSAIFAWLMQSG-----ISTIFAIIVAILLGVLLGLINGLLITKGKLAPFIVTLA 126
Cdd:cd06582 11 IALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALglpfwLALLLALLVAALLGVLLERLVLRPLRGAPLLTLLITFG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 127 TMTIFRGLTLVLMDGRPIAGQRDDFVFQFLGKGQIFGIP--FQVILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFIS 204
Cdd:cd06582 91 GLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYrlFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 205 GINIAKSKTFVYIISALMAVLSGLVLTSrLNSAQPTAGSAYEMDAIAAVVLggtsmtGGSGSLTGTLIGILILGVLNNGL 284
Cdd:cd06582 171 GINVRRVFALTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLGLAESLA 243
|
250 260
....*....|....*....|....*.
gi 490954361 285 NLLgVSSFYQQIVkGIVILIAVLIDR 310
Cdd:cd06582 244 AAY-LSSGYKDAV-AFVLLILVLLVR 267
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
122-307 |
4.01e-06 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 47.44 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 122 IVTLATMTIFRGLTLVLMD----GRPIAGQRDDFVFQFLGKGQIFGIPFQVILFIIVYLILWMLLNkTSYGRKIFAVGGN 197
Cdd:cd06581 79 IATLAFAEIVRLLALNWSSltggSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVR-SPFGRALRAIREN 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 198 EKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTAGSAYEM-DAIAAVVLggtsmtGGSGSLTGTLIGILI 276
Cdd:cd06581 158 EVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSiELLLMVVL------GGLGSLLGPVLGAAL 231
|
170 180 190
....*....|....*....|....*....|.
gi 490954361 277 LGVLNNGLNLLGVSsfYQQIVKGIVILIAVL 307
Cdd:cd06581 232 LVLLPELLRSLGPG--LRLLVFGLLLILVVL 260
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
122-307 |
1.01e-05 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 46.23 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 122 IVTLATMTIFRGLTLVLMD----GRPIAGQRDDFVFQFLGKGQIFGIPFQVILFIIVYLILWMLLNkTSYGRKIFAVGGN 197
Cdd:COG4177 89 IATLAFAEIVRLLALNLESltggADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVR-SRFGRALRAIREN 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 198 EKASFISGINIAKSKTFVYIISALMAVLSGLVLTSRLNSAQPTA-GSAYEMDAIAAVVLggtsmtGGSGSLTGTLIGILI 276
Cdd:COG4177 168 EIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFLLSIEILLMVVL------GGLGSLLGPVLGAVL 241
|
170 180 190
....*....|....*....|....*....|.
gi 490954361 277 LGVLNNGLNLLGvssFYQQIVKGIVILIAVL 307
Cdd:COG4177 242 LVLLPELLRSLP---EYRLLIFGLLLILVVL 269
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
168-305 |
1.49e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 45.51 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 168 VILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLVL-TSRLNSAQPTAGSAYE 246
Cdd:cd06580 98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAGYG 177
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490954361 247 MDAIAAVVLGGTSMTggsgsltGTLIGILILGVLNNGLNLL----GVSSFYQQIVKGIVILIA 305
Cdd:cd06580 178 FIAIAVALLGRWNPL-------GILLAALLFGALEAGGIALqrsgGVPSELVQVLPGIIVLFV 233
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
168-255 |
1.76e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 39.72 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490954361 168 VILFIIVYLILWMLLNKTSYGRKIFAVGGNEKASFISGINIAKSKTFVYIISALMAVLSGLV-LTSRLNSAQPTAGSAYE 246
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVeVLGVQGRLTPGFSPGYG 279
|
....*....
gi 490954361 247 MDAIAAVVL 255
Cdd:COG4603 280 FTGIAVALL 288
|
|
| |
