|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
9-302 |
2.02e-140 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 398.66 E-value: 2.02e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 9 QLNHGRKVWDFMRWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNF 88
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 89 GSSRDIMVRMPPVhdANGSQELGSKVVSVINDSTsQNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWR 168
Cdd:COG0341 81 GSDNDVLIRTPPL--DGESAEEVEKVRAALKEAF-GDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 169 LAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRT 248
Cdd:COG0341 158 FAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRT 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490986462 249 LITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:COG0341 238 INTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
45-292 |
1.95e-109 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 318.45 E-value: 1.95e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 45 GFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNFGSSRDIMVRMPPVHDANGSqELGSKVVSVINdSTSQ 124
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSE-ELREALEEALK-NVDP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 125 NATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLM 204
Cdd:TIGR00966 79 DAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 205 SVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIG 284
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 490986462 285 TASSIYVA 292
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
17-321 |
7.06e-99 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 307.54 E-value: 7.06e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 17 WDFMRWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNFGS-SRDIM 95
Cdd:PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 96 VRMPPVhdANGSQELGSKVVSVINDSTSQN--ATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGV 173
Cdd:PRK13024 529 VRTYGI--LSDDEEADTEIVAKLKNALKNDkgGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGA 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 174 VIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSG 253
Cdd:PRK13024 607 ILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSL 686
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490986462 254 TTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSI 321
Cdd:PRK13024 687 TTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKKKKKRKKVKKWEVEKI 754
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
114-302 |
3.25e-79 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 239.43 E-value: 3.25e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 114 VVSVINDSTSQNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHI 193
Cdd:pfam02355 1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 194 EIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGF 273
Cdd:pfam02355 81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160
|
170 180
....*....|....*....|....*....
gi 490986462 274 SLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLGER 189
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
147-224 |
3.99e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 45.54 E-value: 3.99e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490986462 147 ALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIREN 224
Cdd:NF037998 960 AISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
121-305 |
5.38e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 44.77 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 121 STSQNATVKRIEFVGPSVGADLAQTGALALIAALVCILI-------YVGFRFEWRLAAGVVIALAhDVVITMGVLSLLHI 193
Cdd:NF037998 415 EALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLIlaiaimiYLLFAYRLLGLFAIIIALT-SISLTLYSPTWFGL 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 194 EIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPyEIFNVSLTQTLhrTLITSGTTLMVILMLYLF--GGPILE 271
Cdd:NF037998 494 AIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIE-ESFKIANKETI--GIIVDALVVLLIPNLSLFwiGSNSIK 570
|
170 180 190
....*....|....*....|....*....|....*..
gi 490986462 272 GFSLTMLIGVSIGTASSIYVA---SALALKLGMKREH 305
Cdd:NF037998 571 SFATILLVGVIISLVLVIIVArlmIWLTIKLQWFKKY 607
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecF |
COG0341 |
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular ... |
9-302 |
2.02e-140 |
|
Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440110 [Multi-domain] Cd Length: 291 Bit Score: 398.66 E-value: 2.02e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 9 QLNHGRKVWDFMRWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNF 88
Cdd:COG0341 1 RLFPGNTNIDFMKKRKIWFAISAVLILASIVSLFTRGLNLGIDFTGGTLIEVSFEQPVDLEEVREALEEAGLGDASVQTF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 89 GSSRDIMVRMPPVhdANGSQELGSKVVSVINDSTsQNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWR 168
Cdd:COG0341 81 GSDNDVLIRTPPL--DGESAEEVEKVRAALKEAF-GDVEIVRVEFVGPTVGKELTRKALLALLVALIGILIYIAFRFEWR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 169 LAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRT 248
Cdd:COG0341 158 FAVGAVVALLHDVLITLGIFSLFGLEFDLTFIAALLTIIGYSLNDTVVVFDRIRENLRKYRKMTLAEIINLSINQTLSRT 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 490986462 249 LITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:COG0341 238 INTSLTTLLVVLALLFFGGETLRDFALALLIGIIVGTYSSIFIASPLLLWLGKR 291
|
|
| 3a0501s07 |
TIGR00966 |
protein-export membrane protein SecF; This bacterial protein is always found with the ... |
45-292 |
1.95e-109 |
|
protein-export membrane protein SecF; This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273368 [Multi-domain] Cd Length: 246 Bit Score: 318.45 E-value: 1.95e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 45 GFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNFGSSRDIMVRMPPVHDANGSqELGSKVVSVINdSTSQ 124
Cdd:TIGR00966 1 GFNFGIDFTGGTVIETRLEQAADVAEVRDVLEKAGIEGVVIQEFGSSHTIMIRIPTLDTEQSE-ELREALEEALK-NVDP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 125 NATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLM 204
Cdd:TIGR00966 79 DAEIRSIDAVGPSVGGELARKAVLALLAALVLILIYITVRFEWRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 205 SVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIG 284
Cdd:TIGR00966 159 TIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238
|
....*...
gi 490986462 285 TASSIYVA 292
Cdd:TIGR00966 239 TYSSIFIA 246
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
17-321 |
7.06e-99 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 307.54 E-value: 7.06e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 17 WDFMRWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNFGS-SRDIM 95
Cdd:PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGIDFTGGTRYEIRTDQPVDLEQVRADLKELGLGEVNIVTFGSdNNQVL 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 96 VRMPPVhdANGSQELGSKVVSVINDSTSQN--ATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGV 173
Cdd:PRK13024 529 VRTYGI--LSDDEEADTEIVAKLKNALKNDkgGTIPSSETVGPTVGKELARNAIIAVLIALIGILLYILIRFEWTFSLGA 606
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 174 VIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSG 253
Cdd:PRK13024 607 ILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTSL 686
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490986462 254 TTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSI 321
Cdd:PRK13024 687 TTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLWLDLEKRRLKKKKKRKKVKKWEVEKI 754
|
|
| SecD_SecF |
pfam02355 |
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF ... |
114-302 |
3.25e-79 |
|
Protein export membrane protein; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force.
Pssm-ID: 280510 [Multi-domain] Cd Length: 189 Bit Score: 239.43 E-value: 3.25e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 114 VVSVINDSTSQNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHI 193
Cdd:pfam02355 1 VVEALLKNVGPDAEIISIETVGPTVGSELARKAVLALLFALLLILIYVGLRFEWRFALGAIIALAHDVIITVGVFSLFGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 194 EIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGF 273
Cdd:pfam02355 81 EVDLATVAALLTIIGYSVNDTVVVFDRVRENLRKKTRATLNEIMNLSINQTLTRTINTSLTTLLVVVALFVFGGGSLKDF 160
|
170 180
....*....|....*....|....*....
gi 490986462 274 SLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:pfam02355 161 SLALLVGVIVGTYSSIFIASPILLDLGER 189
|
|
| secF |
PRK13021 |
preprotein translocase subunit SecF; Reviewed |
21-305 |
1.23e-78 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 237274 [Multi-domain] Cd Length: 297 Bit Score: 241.68 E-value: 1.23e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 21 RWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEKPVDMDQVRQSLQKAGFEEPQLQNFGSSRDIMVRMPP 100
Cdd:PRK13021 8 KWRYISSAISIVLMLLSLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQEVSVISASEPGRWVLRYAP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 101 VHDANGSQELGSkVVSVINDstsqNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHD 180
Cdd:PRK13021 88 ADTAQSNVDIQQ-ALAPLGT----EVQVLNSSIVGPQVGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 181 VVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVIL 260
Cdd:PRK13021 163 VIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVG 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 490986462 261 MLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKREH 305
Cdd:PRK13021 243 ALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLGLSPEH 287
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
19-295 |
5.60e-78 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 254.64 E-value: 5.60e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 19 FMRWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEKPV-DMDQVRQSLQKAGFEEPQLQNFGSSRDIMVR 97
Cdd:PRK14726 549 FMGIRRYVFTLSAALSLASLVLFATVGLNLGIDFTGGSLIEVRAKQGNaDIADIRARLNELNLGEVQVERFGSPRDALIR 628
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 98 mppVHDANGSQELGSKVVSVINDSTSQNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIAL 177
Cdd:PRK14726 629 ---IASQDGGENAEQSAVTLVRGELEDDYDFRRVEVVGPAVSGELTMAATLGVLAALAAILIYIWIRFEWQFAVGAIIAT 705
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 178 AHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLM 257
Cdd:PRK14726 706 LHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTSATTLL 785
|
250 260 270
....*....|....*....|....*....|....*...
gi 490986462 258 VILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASAL 295
Cdd:PRK14726 786 ALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPV 823
|
|
| 2A0604s01 |
TIGR00916 |
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY ... |
121-289 |
1.10e-58 |
|
protein-export membrane protein, SecD/SecF family; The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273336 [Multi-domain] Cd Length: 192 Bit Score: 187.08 E-value: 1.10e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 121 STSQNATVKRIEFVG---PSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHIEIDL 197
Cdd:TIGR00916 21 IVLDNAKVISAPVVGtvgPTLGGELIKAGIIALLIGLVLVLLYMLLRYEWRGAIAAIAALVHDVILILGVLSLFGATLTL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 198 TIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTM 277
Cdd:TIGR00916 101 PGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTL 180
|
170
....*....|..
gi 490986462 278 LIGVSIGTASSI 289
Cdd:TIGR00916 181 GIGVIAGTYSSI 192
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
19-302 |
3.64e-47 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 169.41 E-value: 3.64e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 19 FMRWDYWAFGISGFLLILSIAIIGVRGFNWGLDFTGGTVIEITLEK-PVDMDQVRQSLQKAGFEEPQLQNFGSSRDIMVR 97
Cdd:PRK13023 455 FMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNgDANLEDINERLAELNIDSARVLPAKSPRSALVI 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 98 MppvhdanGSQELG----SKVVSVINDSTSQNATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGV 173
Cdd:PRK13023 535 I-------GSQEVGddaeQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGA 607
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 174 VIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSG 253
Cdd:PRK13023 608 VLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSF 687
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 490986462 254 TTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMK 302
Cdd:PRK13023 688 VTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
18-304 |
2.98e-41 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 153.09 E-value: 2.98e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 18 DFMRWDYWAFGISGFLLILSIAIIGVRGFN--WGLDFTGGTVIEITL--EKPVDMDQVRQSL----QKAGF--EEPQLQN 87
Cdd:PRK12911 1082 DFLKECKRLWVVSGSVLVLGCVALGFGAWNsvLGMDFKGGYALTLDPsdVCEYDVEQMRSKLrkkfQQIGLssRDFRIRT 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 88 FGSSRDIMV---------------RMPPVHDANGSQELGskVVSVINDSTS-------QNATVKriefVGPSVGADLAQT 145
Cdd:PRK12911 1162 FDSSEKIKIyfsqnaldrveaiegAGSEQSDHHLALVLG--VLSDTGSDTSsevfdatQNFWFK----VSGQLSNKMRTQ 1235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 146 GALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLH-----IEIDLTIVASLMSVIGYSLNDSIVVSDR 220
Cdd:PRK12911 1236 AVIALFGALGIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVALHfflqkIQIDLQAIGALMTVLGYSLNNTLIIFDR 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 221 IRENfRKIRRGTPYEIF-NVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKL 299
Cdd:PRK12911 1316 IRED-RQEKLFTPMPILiNDALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFM 1394
|
....*
gi 490986462 300 GMKRE 304
Cdd:PRK12911 1395 VRKEE 1399
|
|
| PRK08578 |
PRK08578 |
preprotein translocase subunit SecF; Reviewed |
33-280 |
1.25e-17 |
|
preprotein translocase subunit SecF; Reviewed
Pssm-ID: 236302 [Multi-domain] Cd Length: 292 Bit Score: 81.52 E-value: 1.25e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 33 LLILSIAIIGVR------GFNWGLDFTGGTVIEITLEkpvDMDQvrQSLQKAGFEEPQL-QNFGSSRDIMVRMPPVHDAN 105
Cdd:PRK08578 23 VLLLSLLLLGGTfattgsPVKLGIDFTGGTEITIQTN---DASP--DELESALSGEPGVdVRKGSGNGYIITFGSGDDTD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 106 gSQELGSKVVSVINDSTSQNATVKrIEFVGPSVGADLAQTGALALIAALV--CILIYVGFRfEWRLAAGVVIALAHDVVI 183
Cdd:PRK08578 98 -VDKLADAVKEFFNVDSISELNYS-EKQIGPTFGSQFQEQALKAVGFAFIgmAVVVFLIFR-TPVPSLAVILSAFSDIII 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 184 TMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIREnfrkiRRGTPYEifnvSLTQTLHRTLITSGTTLMVILMLY 263
Cdd:PRK08578 175 ALALMNLFGIELSLATVAALLMLIGYSVDSDILLTTRVLK-----RRGTFDE----SIKRAMRTGITMTLTTIAAMAVLY 245
|
250 260
....*....|....*....|.
gi 490986462 264 L----FGGPILEGFSLTMLIG 280
Cdd:PRK08578 246 IvstiPQAEVLANIAAVLIFG 266
|
|
| secD |
TIGR01129 |
protein-export membrane protein SecD; Members of this family are highly variable in length ... |
134-295 |
1.99e-13 |
|
protein-export membrane protein SecD; Members of this family are highly variable in length immediately after the well-conserved motif LGLGLXGG at the amino-terminal end of this model. Archaeal homologs are not included in the seed and score between the trusted and noise cutoffs. SecD from Mycobacterium tuberculosis has a long Pro-rich insert. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273456 [Multi-domain] Cd Length: 397 Bit Score: 70.39 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 134 VGPSVGADLAQTGALALIAALVCILIYVGFRFEWrlaAGVV--IALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSL 211
Cdd:TIGR01129 238 IGPSLGADSIEAGIKAGLIGLVLVLVFMILYYRL---FGLIaaIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 212 NDSIVVSDRIREnfrKIRRG-TPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFG-GPIlEGFSLTMLIGVSIGTASSI 289
Cdd:TIGR01129 315 DANVLIYERIKE---ELRLGkSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGtGPV-KGFAVTLAIGIIASLFTAL 390
|
....*.
gi 490986462 290 YVASAL 295
Cdd:TIGR01129 391 VFTRLL 396
|
|
| SecD |
COG0342 |
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular ... |
134-291 |
7.41e-13 |
|
Preprotein translocase subunit SecD [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440111 [Multi-domain] Cd Length: 434 Bit Score: 68.60 E-value: 7.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 134 VGPSVGADLAQTGALALIAALVCILIYVGFRF-EWRLAAgvVIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLN 212
Cdd:COG0342 261 VGPTLGADSIEKGLIAGLIGLLLVALFMLLYYrLPGLVA--NIALALNVVLLLGVLSLLGATLTLPGIAGIILTIGMAVD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 213 DSIVVSDRIREnfrKIRRGtpyeifnVSLTQTLH-------RTLITS-GTTLMVILMLYLFG-GPIlEGFSLTMLIGVSI 283
Cdd:COG0342 339 ANVLIFERIRE---ELRAG-------RSLRAAIEagfkrafSTILDAnVTTLIAAVVLFVLGtGPV-KGFAVTLILGILI 407
|
....*...
gi 490986462 284 GTASSIYV 291
Cdd:COG0342 408 SMFTAVPV 415
|
|
| PRK13024 |
PRK13024 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
126-292 |
3.83e-12 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 237276 [Multi-domain] Cd Length: 755 Bit Score: 66.79 E-value: 3.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 126 ATVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFewRLAaGVV--IALAHDVVITMGVLSLLHIEIDLTIVASL 203
Cdd:PRK13024 248 LKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYY--GLP-GLIanIALLLYIFLTLGALSSLGAVLTLPGIAGL 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 204 MSVIGYSLNDSIVVSDRIRENFRK-------IRRGtpyeiFNVSLtqtlhRTLITSG-TTLMVILMLYLFG-GPILeGFS 274
Cdd:PRK13024 325 VLGIGMAVDANVLIFERIKEELRKgkslkkaFKKG-----FKNAF-----STILDSNiTTLIAAAILFFFGtGPVK-GFA 393
|
170
....*....|....*...
gi 490986462 275 LTMLIGVSIGTASSIYVA 292
Cdd:PRK13024 394 TTLIIGILASLFTAVFLT 411
|
|
| secD |
PRK05812 |
preprotein translocase subunit SecD; Reviewed |
126-292 |
1.75e-11 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 235615 [Multi-domain] Cd Length: 462 Bit Score: 64.48 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 126 ATVKRIE--FVGPSVGADLAQTGALALIAALVCILIYVGFRFewRLaAGVV--IALAHDVVITMGVLSLLHIEIDLTIVA 201
Cdd:PRK05812 277 APLEIVEerTIGPSLGADSIRAGLIAGLIGLALVLLFMILYY--RL-FGLIanIALVANLVLILAVLSLLGATLTLPGIA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 202 SLMSVIGYSLNDSIVVSDRIREnfrKIRRGtpyeifnVSLTQTLH-------RTLITS-GTTLMVILMLYLFG-GPIlEG 272
Cdd:PRK05812 354 GIVLTIGMAVDANVLIFERIRE---ELREG-------RSLRSAIEagfkrafSTILDSnITTLIAAIILYALGtGPV-KG 422
|
170 180
....*....|....*....|
gi 490986462 273 FSLTMligvSIGTASSIYVA 292
Cdd:PRK05812 423 FAVTL----GIGILTSMFTA 438
|
|
| MMPL |
COG1033 |
Predicted exporter protein, RND superfamily [General function prediction only]; |
51-304 |
2.59e-11 |
|
Predicted exporter protein, RND superfamily [General function prediction only];
Pssm-ID: 440656 [Multi-domain] Cd Length: 767 Bit Score: 64.50 E-value: 2.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 51 DFTGGTVIEITLEK-PVDMDQVRQSLQKagfeEPQLQNFGSSRD-----IMVRM--PPVHDANGSQELGSKVVSVINDST 122
Cdd:COG1033 119 GLTVEPLIPDELPAsPEELAELREKVLS----SPLYVGRLVSPDgkatlIVVTLdpDPLSSDLDRKEVVAEIRAIIAKYE 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 123 SQNATVK-------RIEFVGpSVGADLAQTGALALIaaLVCILIYVGFR-FEWRLAAGVVIALAhdVVITMGVLSLLHIE 194
Cdd:COG1033 195 DPGVEVYltgfpvlRGDIAE-AIQSDLAIFFPLALL--LILLLLFLFFRsLRGVLLPLLVVLLA--VIWTLGLMGLLGIP 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 195 IDL--TIVASLMSVIGysLNDSIVVSDRIRENFRkiRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEG 272
Cdd:COG1033 270 LSPltILVPPLLLAIG--IDYGIHLLNRYREERR--KGLDKREALREALRKLGPPVLLTSLTTAIGFLSLLFSDIPPIRD 345
|
250 260 270
....*....|....*....|....*....|..
gi 490986462 273 FSLTMLIGVSIGTASSIYVASALALKLGMKRE 304
Cdd:COG1033 346 FGIVAAIGVLLAFLTSLTLLPALLSLLPRPKP 377
|
|
| PRK14726 |
PRK14726 |
protein translocase subunit SecDF; |
134-281 |
2.99e-10 |
|
protein translocase subunit SecDF;
Pssm-ID: 237805 [Multi-domain] Cd Length: 855 Bit Score: 61.27 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 134 VGPSVGADLAQTGALA-LIAA-LVCILIYVGFRFEWRLAagvVIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSL 211
Cdd:PRK14726 362 VGPGLGADSIAAGLVAgLIAAiLVAALMIGFYGFLGVIA---VIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAV 438
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490986462 212 NDSIVVSDRIRENFRK-------IRRGtpyeiFNVSLtqtlhRTLITSGTTLMV--ILMLYLFGGPIlEGFSLTMLIGV 281
Cdd:PRK14726 439 DSNVLIYERIREEEKTghsliqaLDRG-----FSRAL-----ATIVDANVTILIaaVILFFLGSGAV-RGFAVTLAVGI 506
|
|
| PRK13023 |
PRK13023 |
protein translocase subunit SecDF; |
124-281 |
2.36e-09 |
|
protein translocase subunit SecDF;
Pssm-ID: 171842 [Multi-domain] Cd Length: 758 Bit Score: 58.48 E-value: 2.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 124 QNATVKRIEFVGPSVGADLAQTGALA-LIAALVCILIYVgfrfewrLAAGVV-----IALAHDVVITMGVLSLLHIEIDL 197
Cdd:PRK13023 258 QAVTVLEERTIASALGEDYASAAVLAaLLAALVVGLFMV-------LSYGILgvialVALVVNIIILTAVLSLIGASISL 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 198 TIVASLMSVIGYSLNDSIVVSDRIRENFRKirrgtPYEIFNvSLTQTLHRTLIT----SGTTLMVILMLYLFGGPILEGF 273
Cdd:PRK13023 331 ASIAGLVLTIGLAVDAHILIYERVREDRRK-----GYSVVQ-AMESGFYRALSTivdaNLTTLIAALVLFLLGSGTVHGF 404
|
....*...
gi 490986462 274 SLTMLIGV 281
Cdd:PRK13023 405 ALTVAIGI 412
|
|
| secD |
PRK08343 |
preprotein translocase subunit SecD; Reviewed |
127-284 |
4.31e-09 |
|
preprotein translocase subunit SecD; Reviewed
Pssm-ID: 236245 [Multi-domain] Cd Length: 417 Bit Score: 57.19 E-value: 4.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 127 TVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRF-EWRLAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLMS 205
Cdd:PRK08343 244 DIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYrEPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIA 323
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490986462 206 VIGYSLNDSIVVSDRIRENFRKIRRGtpyeIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIG 284
Cdd:PRK08343 324 VIGTGVDDLIIITDEVLHEGKVPSRK----VFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGDLKGFAITTILGVLIG 398
|
|
| Sec_GG |
pfam07549 |
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export ... |
40-66 |
3.27e-08 |
|
SecD/SecF GG Motif; This family consists of various prokaryotic SecD and SecF protein export membrane proteins. This SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC. SecD and SecF are required to maintain a proton motive force. This alignment encompasses a -GG- motif typically found in N-terminal half of the SecD/SecF proteins.
Pssm-ID: 462205 [Multi-domain] Cd Length: 27 Bit Score: 48.44 E-value: 3.27e-08
10 20
....*....|....*....|....*..
gi 490986462 40 IIGVRGFNWGLDFTGGTVIEITLEKPV 66
Cdd:pfam07549 1 SLFTRGLNLGLDFTGGTVIELQFDQPV 27
|
|
| 2A067 |
TIGR00921 |
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized ... |
138-315 |
5.08e-08 |
|
The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family; Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273340 [Multi-domain] Cd Length: 719 Bit Score: 54.46 E-value: 5.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 138 VGADLAQTgaLALIAALVCILIYVGFRFEWRLAAGVVIALAhDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVV 217
Cdd:TIGR00921 191 FGKDMGTT--MAISGILVVLVLLLDFKRWWRPLLPLVIILF-GVAWVLGIMGWLGIPLYATTLLAVPMLIGVGIDYGIQT 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 218 SDRIRENFRKIRrgTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTMLIGVSIGTASSIYVASALAL 297
Cdd:TIGR00921 268 LNRYEEERDIGR--AKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQ 345
|
170
....*....|....*...
gi 490986462 298 KLGMKREHMLQQKVEKEG 315
Cdd:TIGR00921 346 SIDIGREKVKKEIIAIGG 363
|
|
| COG4258 |
COG4258 |
Predicted exporter [General function prediction only]; |
142-281 |
2.09e-07 |
|
Predicted exporter [General function prediction only];
Pssm-ID: 443400 [Multi-domain] Cd Length: 783 Bit Score: 52.55 E-value: 2.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 142 LAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHIEIDL-TIVASLMsVIGYSLNDSIvvsdr 220
Cdd:COG4258 638 RNDALWLLLLALLLILLLLLLRLRSLRRALRVLLPPLLAVLLTLAILGLLGIPLNLfHLIALLL-VLGIGIDYAL----- 711
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490986462 221 irenFrkIRRGTPYEifnVSLTQTLHRTLITSGTTLMVILMLYLFGGPILEGFSLTMLIGV 281
Cdd:COG4258 712 ----F--FTEGLLDK---GELARTLLSILLAALTTLLGFGLLAFSSTPALRSFGLTVLLGI 763
|
|
| PRK12911 |
PRK12911 |
bifunctional preprotein translocase subunit SecD/SecF; Reviewed |
132-292 |
1.40e-05 |
|
bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Pssm-ID: 171815 [Multi-domain] Cd Length: 1403 Bit Score: 46.78 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 132 EFVGPSVGADLAQTGALALIAALVC--ILIYVGFRFEWRLAAGVVIAlahDVVITMGVLSLLHIEIDLTIVASLMSVIGY 209
Cdd:PRK12911 897 EVISPELGKSQRTQGIISVCLGLAVliVLMSVYYRFGGVIASGAVLL---NLLLIWAALQYLDAPLTLSGLAGIVLAMGM 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 210 SLNDSIVVSDRIRENFRKIRRGTP-----YE-----IFNVSLTqtlhrtlitsgTTLMVILMLYLFGGPIlEGFSLTMLI 279
Cdd:PRK12911 974 AVDANVLVFERIREEYLLSRSLSEsveagYKkafsaIFDSNLT-----------TILASALLLMLDTGPI-KGFALTLII 1041
|
170
....*....|...
gi 490986462 280 GVsigtASSIYVA 292
Cdd:PRK12911 1042 GI----FSSMFTA 1050
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
147-224 |
3.99e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 45.54 E-value: 3.99e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490986462 147 ALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVITMGVLSLLHIEIDLTIVASLMSVIGYSLNDSIVVSDRIREN 224
Cdd:NF037998 960 AISFAIILLALIVYILIRFKWTYYVALALAIVFAPAITVSIVIIFRVPITFEILIAFVSIIGFAIASAIIILGKAKSL 1037
|
|
| RND_1 |
NF037998 |
protein translocase SecDF, variant type; Members of this family are identified by TCDB as ... |
121-305 |
5.38e-05 |
|
protein translocase SecDF, variant type; Members of this family are identified by TCDB as belonging to 2.A.6.4.4, a variant 12-TM type SecDF, as found in Spiroplasma, Mesoplasma, and Acholeplasma.
Pssm-ID: 468306 Cd Length: 1237 Bit Score: 44.77 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 121 STSQNATVKRIEFVGPSVGADLAQTGALALIAALVCILI-------YVGFRFEWRLAAGVVIALAhDVVITMGVLSLLHI 193
Cdd:NF037998 415 EALINQTTSGFTFKVNGISEFNPVVTLLMLIASIIFLLIlaiaimiYLLFAYRLLGLFAIIIALT-SISLTLYSPTWFGL 493
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 194 EIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPyEIFNVSLTQTLhrTLITSGTTLMVILMLYLF--GGPILE 271
Cdd:NF037998 494 AIGPESITAIFIAIGLVLESCSLLFEAFKKHLYKNKRSIE-ESFKIANKETI--GIIVDALVVLLIPNLSLFwiGSNSIK 570
|
170 180 190
....*....|....*....|....*....|....*..
gi 490986462 272 GFSLTMLIGVSIGTASSIYVA---SALALKLGMKREH 305
Cdd:NF037998 571 SFATILLVGVIISLVLVIIVArlmIWLTIKLQWFKKY 607
|
|
| YdfJ |
COG2409 |
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function ... |
137-300 |
6.68e-04 |
|
Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily [General function prediction only];
Pssm-ID: 441964 [Multi-domain] Cd Length: 697 Bit Score: 41.29 E-value: 6.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 137 SVGADLAQTGALALIAALVcILIYVgFR-FewrLAAGVVIALA-HDVVITMGVLSLL--HIEIDlTIVASLMSVIG---- 208
Cdd:COG2409 166 AFEEDLGRAELITLPVALV-VLLLV-FRsL---VAALLPLLTAgLAVGVALGLLALLaaFTDVS-SFAPNLLTMLGlgvg 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 209 --YSLndsIVVSdRIRENfrkIRRGTPYEifnVSLTQTLH---RTLITSGTTLMV-ILMLYLFGGPILEGFSLTMLIGVS 282
Cdd:COG2409 240 idYAL---FLVS-RYREE---LRAGEDRE---EAVARAVAtagRAVLFSGLTVAIaLLGLLLAGLPFLRSMGPAAAIGVA 309
|
170
....*....|....*...
gi 490986462 283 IGTASSIYVASALALKLG 300
Cdd:COG2409 310 VAVLAALTLLPALLALLG 327
|
|
| secD |
PRK12933 |
protein translocase subunit SecD; |
134-295 |
6.95e-04 |
|
protein translocase subunit SecD;
Pssm-ID: 183831 [Multi-domain] Cd Length: 604 Bit Score: 41.21 E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 134 VGPSVGADLAQTG--ALALIAALVCILIYVGFRfewRLAAGVVIALAHDVVITMGVLSLLHIEIdLTI--VASLMSVIGY 209
Cdd:PRK12933 430 IGPSLGAENIENGfaALALGMGITLLFMALWYR---RLGWVANVALIANMVCLFGLLALIPGAV-LTLpgIAGLVLTVGM 505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490986462 210 SLNDSIVVSDRIREnfrKIRRGTpyeifnvSLTQTLHR-------TLITSG-TTLMVILMLYLFG-GPIlEGFSLTMLIG 280
Cdd:PRK12933 506 AVDTNVLIFERIKD---KLKEGR-------SFAQAIDTgfdsafsTIFDANfTTMITAVVLYSIGnGPI-QGFALTLGLG 574
|
170
....*....|....*
gi 490986462 281 VSIGTASSIYVASAL 295
Cdd:PRK12933 575 LLTSMFTGIFASRAL 589
|
|
| |
