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Conserved domains on  [gi|490987625|ref|WP_004849358|]
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MULTISPECIES: inner membrane protein YbjM [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbjM super family cl12611
Putative inner membrane protein of Enterobacteriaceae; This family is conserved in the ...
 5-113 9.40e-32

Putative inner membrane protein of Enterobacteriaceae; This family is conserved in the Enterobacteriaceae. It is a putative inner membrane protein, named YbjM, but the function is not known.


The actual alignment was detected with superfamily member pfam11045:

Pssm-ID: 431625  Cd Length: 116  Bit Score: 108.60  E-value: 9.40e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490987625    5 RAWAGIICGFFLFIVVCLSLLLHMKGAFRATG-HPELGLLFFLLPGAAASCLSPGQRVLRPLIGAMLAAPVCLVVMRLFF 83
Cdd:pfam11045   3 RRWAGVVCCFVLFTLVFLSQKTEMSGAFAAAGvHGEPGLLLFLLPGIVASFLSRRRRLLYPLLGALLAMPVCLLLMHLWF 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 490987625   84 VTERSFWQELAWLFSAVFWCALGALCFLFI 113
Cdd:pfam11045  83 TPTRSFWQELAWLLSAVFWCGLGALCFLFL 112
 
Name Accession Description Interval E-value
YbjM pfam11045
Putative inner membrane protein of Enterobacteriaceae; This family is conserved in the ...
 5-113 9.40e-32

Putative inner membrane protein of Enterobacteriaceae; This family is conserved in the Enterobacteriaceae. It is a putative inner membrane protein, named YbjM, but the function is not known.


Pssm-ID: 431625  Cd Length: 116  Bit Score: 108.60  E-value: 9.40e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490987625    5 RAWAGIICGFFLFIVVCLSLLLHMKGAFRATG-HPELGLLFFLLPGAAASCLSPGQRVLRPLIGAMLAAPVCLVVMRLFF 83
Cdd:pfam11045   3 RRWAGVVCCFVLFTLVFLSQKTEMSGAFAAAGvHGEPGLLLFLLPGIVASFLSRRRRLLYPLLGALLAMPVCLLLMHLWF 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 490987625   84 VTERSFWQELAWLFSAVFWCALGALCFLFI 113
Cdd:pfam11045  83 TPTRSFWQELAWLLSAVFWCGLGALCFLFL 112
 
Name Accession Description Interval E-value
YbjM pfam11045
Putative inner membrane protein of Enterobacteriaceae; This family is conserved in the ...
 5-113 9.40e-32

Putative inner membrane protein of Enterobacteriaceae; This family is conserved in the Enterobacteriaceae. It is a putative inner membrane protein, named YbjM, but the function is not known.


Pssm-ID: 431625  Cd Length: 116  Bit Score: 108.60  E-value: 9.40e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490987625    5 RAWAGIICGFFLFIVVCLSLLLHMKGAFRATG-HPELGLLFFLLPGAAASCLSPGQRVLRPLIGAMLAAPVCLVVMRLFF 83
Cdd:pfam11045   3 RRWAGVVCCFVLFTLVFLSQKTEMSGAFAAAGvHGEPGLLLFLLPGIVASFLSRRRRLLYPLLGALLAMPVCLLLMHLWF 82

                          90       100       110
                  ....*....|....*....|....*....|
gi 490987625   84 VTERSFWQELAWLFSAVFWCALGALCFLFI 113
Cdd:pfam11045  83 TPTRSFWQELAWLLSAVFWCGLGALCFLFL 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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