NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490990287|ref|WP_004852020|]
View 

MULTISPECIES: carbohydrate ABC transporter permease [Klebsiella]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 3-279 6.05e-85

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 255.41  E-value: 6.05e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   3 SKRWDTAGRWCIYALLLI---VFVGPFWGIVATAFSGAP-VKPGELLAWPHQFSLENFIFAWMDIGVWQYLLNSILVVFF 78
Cdd:COG0395    6 RRRRRRLGRILLYLLLILlalLFLFPLYWMVVTSFKPPAeIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  79 GTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINwrlpliDASLYNSYLGMILP--VVGWAFS 156
Cdd:COG0395   86 STVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFR------QLGLLNTYWGLILPylAFGLPFG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 157 IFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTIPVILGTLR 236
Cdd:COG0395  160 IFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490990287 237 TDESITPNIFIAITLLAMLPSIIVYLGLQKHFNRGIMSGAVKG 279
Cdd:COG0395  240 GQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 3-279 6.05e-85

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 255.41  E-value: 6.05e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   3 SKRWDTAGRWCIYALLLI---VFVGPFWGIVATAFSGAP-VKPGELLAWPHQFSLENFIFAWMDIGVWQYLLNSILVVFF 78
Cdd:COG0395    6 RRRRRRLGRILLYLLLILlalLFLFPLYWMVVTSFKPPAeIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  79 GTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINwrlpliDASLYNSYLGMILP--VVGWAFS 156
Cdd:COG0395   86 STVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFR------QLGLLNTYWGLILPylAFGLPFG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 157 IFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTIPVILGTLR 236
Cdd:COG0395  160 IFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490990287 237 TDESITPNIFIAITLLAMLPSIIVYLGLQKHFNRGIMSGAVKG 279
Cdd:COG0395  240 GQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
66-273 5.29e-31

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 116.76  E-value: 5.29e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  66 WQYLLNSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINwrlpliDASLYNSYLG 145
Cdd:PRK10973  74 GRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIA------NLKMLDSYAG 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 146 MILPVVGWAFSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSL 225
Cdd:PRK10973 148 LTLPLMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSL 227

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 490990287 226 NTIPV-ILGTLRTDESITP-NIFIAITLLAMLPSIIVYLGLQKHFNRGIM 273
Cdd:PRK10973 228 GTAVAgIKGMIATGEGTTEwNQVMAAMLLTLIPPVVIVLAMQRAFVRGLV 277
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-258 5.24e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.93  E-value: 5.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  69 LLNSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINWRLPLIDASLYNSYLGMIL 148
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 149 PVVGWAFSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTI 228
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 490990287 229 PVILGTLRTDESITPNIFIAITLLAMLPSI 258
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 89-272 1.97e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.46  E-value: 1.97e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   89 LAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIinwrlpLIDASLYNSYLGMILPVVGWAFSIFVLT--EFMSA 166
Cdd:pfam00528   4 LGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVI------AILSILGHGILPAIILALLGWAGYARLIrrAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  167 IPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTiPVILGTLRTDESITPNIF 246
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL-LLIEAILGYDYPEIQGPV 156

                         170       180
                  ....*....|....*....|....*.
gi 490990287  247 IAITlLAMLPSIIVYLGLQKHFNRGI 272
Cdd:pfam00528 157 LAAA-LILLLLNLLVDILQRLLDPRV 181
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-219 7.00e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.15  E-value: 7.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287    8 TAGRWCIYALLLIVFVGPFWGIVATAFSGapvKPGELLAwphqfsLENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVS 87
Cdd:TIGR03262   4 RLLLAGMILALLLFLLLPLLALLTKSVYD---SDGDFIG------LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   88 ALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPL-YMIINWRLP---LIDASLYnSYLGMILPVVGWAF--SIFVLT 161
Cdd:TIGR03262  75 FAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLiYLFGNQGLLkglLGGFSIY-GFWGIVIGEVFYTFphALMILV 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 490990287  162 EFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIV 219
Cdd:TIGR03262 154 TALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVI 211
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 3-279 6.05e-85

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 255.41  E-value: 6.05e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   3 SKRWDTAGRWCIYALLLI---VFVGPFWGIVATAFSGAP-VKPGELLAWPHQFSLENFIFAWMDIGVWQYLLNSILVVFF 78
Cdd:COG0395    6 RRRRRRLGRILLYLLLILlalLFLFPLYWMVVTSFKPPAeIFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  79 GTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINwrlpliDASLYNSYLGMILP--VVGWAFS 156
Cdd:COG0395   86 STVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFR------QLGLLNTYWGLILPylAFGLPFG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 157 IFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTIPVILGTLR 236
Cdd:COG0395  160 IFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQ 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490990287 237 TDESITPNIFIAITLLAMLPSIIVYLGLQKHFNRGIMSGAVKG 279
Cdd:COG0395  240 GQYGTDWGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 3-279 6.13e-53

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 173.80  E-value: 6.13e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   3 SKRWDTAGRWCIYALLLIVFVGPFWGIVATAFSGAPVKPGELLaWPHQFSLENFIFAWMDIGVWQYLLNSILVVFFGTVM 82
Cdd:COG3833   10 RRRLKLGLRHLVLIILAIIALFPILWVVSASFNPGGSLYSSSL-IPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAII 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  83 QVSVSALAAYALARKKFRG--VALVSLVILstMMLPEEVIAIPLYMIinwrlpLIDASLYNSYLGMILPVVGWA--FSIF 158
Cdd:COG3833   89 SVFLAALAAYAFSRFRFKGrkAGLLALLLL--QMFPAFLALVALYLL------LSALGLLNTLLGLILVYLGGAipFNTW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 159 VLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTIPVILGTLRTD 238
Cdd:COG3833  161 LMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVGLYSFVSD 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 490990287 239 ESITP-NIFIAITLLAMLPSIIVYLGLQKHFNRGIMSGAVKG 279
Cdd:COG3833  241 QRNTNwGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-271 7.57e-32

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 118.29  E-value: 7.57e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   3 SKRWDTAGRWCIYALLLIVFVGPFWGIVATAFSGAPVkpgeLLAWPHQFSLENFIFAWMDIGVWQYLLNSILVVFFGTVM 82
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWF----LTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  83 QVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIinwrlpLIDASLYNSYLGMILP--VVGWAFSIFVL 160
Cdd:COG1177   77 ATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLL------FSALGLSGGLWGLILAhvVFTLPFVVLVV 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 161 TEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSlNTIPV-ILGTLRTde 239
Cdd:COG1177  151 LARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGV-TTLPVyIYSMIRR-- 227

                        250       260       270
                 ....*....|....*....|....*....|..
gi 490990287 240 SITPNIFiAITLLAMLPSIIVYLGLQKHFNRG 271
Cdd:COG1177  228 GISPEIN-ALSTLLILLSLLLLLLAERLRRRG 258
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
66-273 5.29e-31

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 116.76  E-value: 5.29e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  66 WQYLLNSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINwrlpliDASLYNSYLG 145
Cdd:PRK10973  74 GRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIA------NLKMLDSYAG 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 146 MILPVVGWAFSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSL 225
Cdd:PRK10973 148 LTLPLMASATATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDVSL 227

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 490990287 226 NTIPV-ILGTLRTDESITP-NIFIAITLLAMLPSIIVYLGLQKHFNRGIM 273
Cdd:PRK10973 228 GTAVAgIKGMIATGEGTTEwNQVMAAMLLTLIPPVVIVLAMQRAFVRGLV 277
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
16-207 4.85e-22

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 95.23  E-value: 4.85e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  16 ALLLIVFVGPFWGIVATAFSGApvkpgellaWPHQFSLENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVSALAAYALA 95
Cdd:COG1178  296 LLVLLGLLLPLLALLLWSLTKA---------LDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVR 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  96 RKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINWRLPLIdasLYNSYLGMILP--VVGWAFSIFVLTEFMSAIPKELEE 173
Cdd:COG1178  367 RRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL---LYGTLAILVLAyvVRFLPFALRSLEAALAQIDPSLEE 443

                        170       180       190
                 ....*....|....*....|....*....|....
gi 490990287 174 AARIDGANEWQIFFHVILPLVKPALGTVVTFGFI 207
Cdd:COG1178  444 AARSLGASPLRTLRRVTLPLLRPGLLAAALLVFV 477
malG PRK10998
maltose ABC transporter permease MalG;
9-279 1.56e-19

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 85.92  E-value: 1.56e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   9 AGRWCIYALLLIvfvgPFWGIVATAFSGAPVKPGELlaWPHQFSLENFIFAW-------------MDIGVWQYLLNSILV 75
Cdd:PRK10998  18 LLLLGFIALIMF----PLLMVIAISLREGNFATGSL--IPEQISWEHWKLALgfsvehadgrvtpPPFPVLLWLWNSVKV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  76 VFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINWRLPLIDASLYNSYLGMILPVVG-WA 154
Cdd:PRK10998  92 AGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHGGVIFAYLGgIA 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 155 FSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTIPVILGT 234
Cdd:PRK10998 172 LHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQ 251

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 490990287 235 LRTDESITPNIFIAITLLAMLPSIIVYLGLQKHFNRGIMSGAVKG 279
Cdd:PRK10998 252 YLNPQNYLWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
16-207 5.06e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 81.72  E-value: 5.06e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  16 ALLLIVFVGPFWGIVATAFSGAPvkpgeLLAWPHQFS-LENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVSALAAYAL 94
Cdd:COG1175   29 LLLLVFVLYPLLYTLYLSFTDWN-----LLGPPPEFVgLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLL 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  95 ARKkFRGVALVSLVILSTMMLPEEVIAI-------PLYMIINWRLPLIDASLYN-------SYLGMILPVV--GWAFSIF 158
Cdd:COG1175  104 NRK-LRGRGFFRTLFFLPWVISPVVVALiwkwlfnPDYGLLNALLGALGLEPINwlgdpslALPAVIIVTVwkGTGFNML 182

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 490990287 159 VLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFI 207
Cdd:COG1175  183 IFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTI 231
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-207 3.67e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 80.98  E-value: 3.67e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   2 LSKRWDTAGRWCIYALLLIVFVGPFWGIVATAFSGApvkpgellawphqfsLENFIFAWMDIGVWQYLLNSILVVFFGTV 81
Cdd:COG1178    4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG---------------LANFWALLSDPYLWRALGNTLLLALLVTL 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  82 MQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAI----------PLYMIINWRLPLIDASLYnSYLGMILPVV 151
Cdd:COG1178   69 LSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALawialfgpngLLNTLLRALFGLEPPDIY-GLGGIILVLV 147

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490990287 152 GWAFSIFVLT--EFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFI 207
Cdd:COG1178  148 LFNYPYVYLLlrAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 69-258 5.24e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 76.93  E-value: 5.24e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  69 LLNSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIINWRLPLIDASLYNSYLGMIL 148
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 149 PVVGWAFSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTI 228
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 490990287 229 PVILGTLRTDESITPNIFIAITLLAMLPSI 258
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 22-210 6.09e-15

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 72.86  E-value: 6.09e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  22 FVGPFWGIVATAFSGAPVKP-GELLAWPHQFSLENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVSALAAYALARKKFR 100
Cdd:COG0555    8 GFGLTLGLTLLYLSLIVLLPlAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFP 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287 101 GVALVSLVILSTMMLPEEVIAIPLYMI------INWRLPLIDASLYNSYLGMILPV--VGWAFSIFVLTEFMSAIPKELE 172
Cdd:COG0555   88 GKRLVDALVDLPFALPTAVAGIALLLLfgpngwLGQLLAPLGIKVAFTPLGIVLAQtfVSLPFVVRTVQPVLEELDPELE 167

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 490990287 173 EAARIDGANEWQIFFHVILPLVKPALGTvvtfGFIMIW 210
Cdd:COG0555  168 EAAATLGASRWQTFRRVILPLLLPALLT----GFALAF 201
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 15-208 8.19e-15

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 72.49  E-value: 8.19e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  15 YALLLIVFVGPFWGIVATAFSGapvkPGELLAWPHQFSLENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVSALAAYAL 94
Cdd:COG1176   19 LLWLLLFFVLPLLLLLVYSFTT----RDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  95 ARKKFRGVALVSLVILSTMMLPEEVIAIPLYMI------INW---RLPLIDA--SLYNSYLGMILPVVgWA---FSIFVL 160
Cdd:COG1176   95 ARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLlgrnglLNSlllALGLIDEplRLLYTEFAVVIGLV-YVylpFMVLPL 173

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 490990287 161 TEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIM 208
Cdd:COG1176  174 YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIP 221
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 67-198 2.58e-12

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 65.01  E-value: 2.58e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  67 QYLLNSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPL---YMIINWRLPLIdaSLYNSY 143
Cdd:PRK09500  57 QAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLlvlFMLLGIQLGFW--SLLFAH 134

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490990287 144 LGMILPVVgwafSIFVLTEFMSAIPKELeEAARIDGANEWQIFFHVILPLVKPAL 198
Cdd:PRK09500 135 ITFCLPFV----VVTVYSRLKGFDVRML-EAAKDLGASEFTILRKIILPLALPAV 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 89-272 1.97e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.46  E-value: 1.97e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   89 LAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMIinwrlpLIDASLYNSYLGMILPVVGWAFSIFVLT--EFMSA 166
Cdd:pfam00528   4 LGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVI------AILSILGHGILPAIILALLGWAGYARLIrrAALRS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  167 IPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIVVNQDSLNTiPVILGTLRTDESITPNIF 246
Cdd:pfam00528  78 LPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL-LLIEAILGYDYPEIQGPV 156

                         170       180
                  ....*....|....*....|....*.
gi 490990287  247 IAITlLAMLPSIIVYLGLQKHFNRGI 272
Cdd:pfam00528 157 LAAA-LILLLLNLLVDILQRLLDPRV 181
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 8-219 7.00e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.15  E-value: 7.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287    8 TAGRWCIYALLLIVFVGPFWGIVATAFSGapvKPGELLAwphqfsLENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVS 87
Cdd:TIGR03262   4 RLLLAGMILALLLFLLLPLLALLTKSVYD---SDGDFIG------LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   88 ALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPL-YMIINWRLP---LIDASLYnSYLGMILPVVGWAF--SIFVLT 161
Cdd:TIGR03262  75 FAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLiYLFGNQGLLkglLGGFSIY-GFWGIVIGEVFYTFphALMILV 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 490990287  162 EFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYLLPLIV 219
Cdd:TIGR03262 154 TALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVI 211
cysT CHL00187
sulfate transport protein; Provisional
 58-206 1.07e-07

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 51.55  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  58 FAWMDIGVWQYLLnSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPL---YMIINWRLPL 134
Cdd:CHL00187  47 KATEPIALSAYSL-TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLatvYGDNGWIGHL 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490990287 135 IDA---SLYNSYLGMILPV--VGWAFSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGF 206
Cdd:CHL00187 126 LSHlgiQIVFTKLGVLLAMifVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTF 202
modB PRK09421
molybdate ABC transporter permease subunit;
66-204 1.70e-07

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 50.69  E-value: 1.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  66 WQYLLNSILVVFFGTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEEVIAIpLYMIINWRLPLIDASLYN---- 141
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGY-LLLISMGRRGFIGQWLYEwfgi 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490990287 142 ----SYLGMILPVVGWAFSIFVLTEFMS--AIPKELEEAARIDGANEWQIFFHVILPLVKPAL--GTVVTF 204
Cdd:PRK09421  87 sfafSWRGAALAAAVMAFPLMVRAIRLSleAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIiaGTVLAF 157
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 164-213 1.08e-05

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 45.85  E-value: 1.08e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490990287 164 MSAIPKELEEAARIDGANEWQIFFHVILPLVKP--------ALGTVVTFGFIMIWDQY 213
Cdd:COG4209  200 ITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPtivillilNIGNILNVGFEQIYLLY 257
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 69-206 8.88e-05

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 43.11  E-value: 8.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   69 LLNSILVVFFGTVMQVsvsaLAAYALARKKFRGVALVSLVILSTMMLPEEVIAIPLYMI------INWRLPLIDASLYNS 142
Cdd:TIGR00969  66 LLMALIAVPLNGVFGL----LIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLygsngwLGSWLASFGIQIIFT 141

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490990287  143 YLGMILPV--VGWAFSIFVLTEFMSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGF 206
Cdd:TIGR00969 142 WPGMALAMifVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTF 207
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 5-214 4.68e-04

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 41.39  E-value: 4.68e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   5 RWDTAGRWCIYALLLIVFVGPFWGIVATAF-SGA-----PvkpgelLAWPHQFSLENFIFAWMDIgvWQYLLNSILVVFF 78
Cdd:COG4135  296 LGDPALRRLGLALMLLIALLSLLGLALLLLwSFAgrwrfP------DALPSSWTLRFWQRAAPGL--LEPLGNTLLLALA 367

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  79 GTVMQVSVSALAAYALARKKFRGVALVSLVILSTMMLPEevIAIplymiinwrLPLIDASLYNSYLGMILPVVGWAFSIF 158
Cdd:COG4135  368 SALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQ--IAF---------LFGLQVLLLRLGLDGTWLAVIWAHLVF 436

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490990287 159 VLTE-FMS------AIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIWDQYL 214
Cdd:COG4135  437 VLPYvFLSlagpwrALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQYL 499
malF PRK10999
maltose ABC transporter permease MalF;
166-196 6.23e-04

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 41.10  E-value: 6.23e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 490990287 166 AIPKELEEAARIDGANEWQIFFHVILPL-VKP 196
Cdd:PRK10999 400 AIPDDLYEASAMDGAGPFQNFFKITLPLlIKP 431
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 14-207 6.26e-04

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 40.82  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   14 IYALLLIVFVGPFWGIVATAFSGAPVKpgellAWPHQ--FSLENFIFAWMDIGVWQYLLNSILVVFFGTVMQVSVSALAA 91
Cdd:TIGR03262 282 ACLVYCAIISAALLAVVGMAVYASLVK-----FWPYNlsLTLKHYNFDLMDGGGWEAYKNSLRLAATTALIGTILVFGGA 356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   92 YALARKKFRGVALVSLVILST--MMLPEEVIAIPLYMIIN--WRlPLidASLYNSYLGMILPVVGWAFSIFVLT--EFMS 165
Cdd:TIGR03262 357 YLIEKTRGFGLLRGVLRFLAIlpMAVPGLVLGLGYIFFFNapTN-PL--NGLYGTMALLVLCTVVHFYTVSHLTavTALK 433

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 490990287  166 AIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFI 207
Cdd:TIGR03262 434 QIDSEFEAVSASLKVPFYKTFLRVTLPVCLPAILDIARYLFV 475
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 1-210 1.26e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.36  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287   1 MLSKRWDTAGRWCIYALLLIVFVGpFWGIVATAFSGAPVkpgeLLAWPHQFsLENFIFAWMDIGVWQYLLNSILVVFFGT 80
Cdd:COG0600    1 MTTSTRRRLRRLLLPLLSLALLLA-LWELAARLGLVPPF----LLPSPSAV-LAALVELLASGELWEHLLASLLRVLLGF 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  81 VMQVSVSALAAYALARKKFRGVALVSLVILStMMLPeeVIA-IPLYMIInwrLPLIDASLYnsylgmILPVVGWAFSIFV 159
Cdd:COG0600   75 ALAALLGVPLGLLLGLSRLLRRLLDPLLVFL-RPIP--PLAlAPLLILW---FGIGEASKI------FVIFLGAFFPILL 142

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490990287 160 LTEF-MSAIPKELEEAARIDGANEWQIFFHVILPLVKPALGTVVTFGFIMIW 210
Cdd:COG0600  143 NTAAgVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
170-204 1.86e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 38.97  E-value: 1.86e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 490990287 170 ELEEAARIDGANEWQIFFHVILPLVKPAL--GTVVTF 204
Cdd:PRK10971 169 EYEEAAETLGATRWQSFRKVVLPELSPALlaGVALSF 205
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 16-204 2.11e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 38.83  E-value: 2.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  16 ALLLIVFVGPFWGIVATAFSGApvKPGELLAWPHQFSLENFIFAwmdigvwqyLLNSILVVFFGTVMQVSVSALAAYALA 95
Cdd:PRK15050  33 LVLAPLVVYPLVRVVLQSLTGE--HGLGLATYRAVLGSPDFRGA---------LLTTLQIAFASTAGCLVLGVLLALVLA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490990287  96 RKKFRGVALVSLVILSTMMLPEEVIAIPLYMI------IN------WRLPLIDASLYNSYLGMILPVVGWaFSIFVLTEF 163
Cdd:PRK15050 102 FVPFPGASLVGRFIDTFVAFPSFLITLAFTFLygsagsVNialqrlFGLEAPPLDFLYSPGGVILAEITF-YTPFVVRPL 180

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 490990287 164 MSA---IPKELEEAARIDGANEWQIFFHVILPLVKPAL--GTVVTF 204
Cdd:PRK15050 181 LAAfaqLDARQLEAAASLGASPWRVARRVILPEAWPALaaGGSLCL 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH