|
Name |
Accession |
Description |
Interval |
E-value |
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
2-321 |
0e+00 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 541.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 2 NNPAVSGRRYFTKAWLMEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 81
Cdd:PRK09512 1 TTQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 82 LTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDNADLF 161
Cdd:PRK09512 81 LTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNADLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 162 GWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVAR 241
Cdd:PRK09512 161 GWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVAR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 242 LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 321
Cdd:PRK09512 241 LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
1-318 |
5.73e-109 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 319.74 E-value: 5.73e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 1 MNNPAVSGRRYFTKaWLMEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL 80
Cdd:COG1172 1 MSATTTTARSLLRR-LLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 81 ALTGAVAAS-IVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVntgfTDNAD 159
Cdd:COG1172 80 ALSGVVAALlLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPI----SGLPD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 160 LFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEV 239
Cdd:COG1172 156 AFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLA 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490994061 240 ARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDN 318
Cdd:COG1172 236 ARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDR 314
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
53-317 |
6.66e-87 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 261.57 E-value: 6.66e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 53 TSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAAS-IVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATL 131
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALlLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 132 VMMLLLRGVTMVYTNGSPVNTGftdNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRL 211
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGL---PPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 212 SGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNG 291
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*.
gi 490994061 292 LNLLGVSSYYQMIVKAVVILLAVLVD 317
Cdd:cd06579 238 LNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-321 |
3.17e-60 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 196.91 E-value: 3.17e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 23 LIALLVLIAIVSTMSPN-FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 100
Cdd:NF040906 8 LIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAvLMVNWGMPWWLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 101 VAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNG---SPVNTGFTDNA-----DLFG---------- 162
Cdd:NF040906 88 VLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGqsiGPFPDGFQKISsgflpDLFGgtglhlltll 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 163 ------------------------------WFGIGRPL-----------------GIPTPVWIMAIVFLAAWYMLHHTRL 195
Cdd:NF040906 168 lgvlaaaalvwsqlrgrrrrikyglevepmALFIAKLVliaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTVI 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 196 GRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRI 275
Cdd:NF040906 248 GRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTV 327
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 490994061 276 VGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD--NKKQ 321
Cdd:NF040906 328 VGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDvyNKRK 375
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
45-314 |
1.28e-25 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 103.11 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 45 NLFNILQQTSVNAIMAVGMTLVILTSG-IDLSVGSLLALTGAVAA-SIVGIEVNALVAVAAALALGAAIGAVTGVIVAKG 122
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAmLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 123 RVQAFIATLVMMLLLRGVT-MVYTNGSPVNTGFTDNADLFGWFGiGRPLGIPTPVWIMAIVFLAA-WYMLHHTRLGRYIY 200
Cdd:pfam02653 81 KINEVIITLLLNLAALGLAlFLVTGILGGEGGTSGITGPSGFPG-AFLSFAFAFIFLLALLLVLAlWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 201 ALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPT-AGTGYELDAIAAVVLggtslaGGKGRIVGTL 279
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVL------GGAGSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 490994061 280 IGALILGFLNN-GLNLLGVSSYYQMIVKAVVILLAV 314
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
2-321 |
0e+00 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 541.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 2 NNPAVSGRRYFTKAWLMEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 81
Cdd:PRK09512 1 TTQTVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 82 LTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTDNADLF 161
Cdd:PRK09512 81 LTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNADLF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 162 GWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVAR 241
Cdd:PRK09512 161 GWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVAR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 242 LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 321
Cdd:PRK09512 241 LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
1-318 |
5.73e-109 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 319.74 E-value: 5.73e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 1 MNNPAVSGRRYFTKaWLMEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL 80
Cdd:COG1172 1 MSATTTTARSLLRR-LLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 81 ALTGAVAAS-IVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVntgfTDNAD 159
Cdd:COG1172 80 ALSGVVAALlLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPI----SGLPD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 160 LFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEV 239
Cdd:COG1172 156 AFRALGQGSLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLA 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490994061 240 ARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDN 318
Cdd:COG1172 236 ARLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDR 314
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
53-317 |
6.66e-87 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 261.57 E-value: 6.66e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 53 TSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAAS-IVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATL 131
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALlLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 132 VMMLLLRGVTMVYTNGSPVNTGftdNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRL 211
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGL---PPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 212 SGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNG 291
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*.
gi 490994061 292 LNLLGVSSYYQMIVKAVVILLAVLVD 317
Cdd:cd06579 238 LNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
23-321 |
2.27e-85 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 260.25 E-value: 2.27e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 23 LIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA 102
Cdd:COG4158 33 LPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLGLLGIP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 103 AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNtgftdNADL-FGWFGIGRPLGIPTPVWIMAI 181
Cdd:COG4158 113 AALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVF-----NPDLpFAWIGNGYLLGIPWLVVIALA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 182 VFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPT-AGTGYELDAIAA 260
Cdd:COG4158 188 VVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLqLGQGYELDAIAA 267
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490994061 261 VVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 321
Cdd:COG4158 268 VILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYRQ 328
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
23-317 |
6.82e-81 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 250.42 E-value: 6.82e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 23 LIALLVLIAIVSTMS-PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 100
Cdd:COG4214 28 IIALVVIWIVFQILTgGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAvLMVNWGLPWWLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 101 VAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNG---SPVNTGFTDNA-----DLFGWFGIG----- 167
Cdd:COG4214 108 ILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGgtiAPFDPTFQAIGngflpDILGTLSWVlgava 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 168 ----------------------RPL-------------------------GIPTPVWIMAIVFLAAWYMLHHTRLGRYIY 200
Cdd:COG4214 188 vaayvalqlrsrrrrrryglpvEPLwlfvlklallavlilgavyllnsyrGIPIVVLILLVLVVVYTFVLTRTVFGRHIY 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 201 ALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLI 280
Cdd:COG4214 268 AVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYGAVI 347
|
330 340 350
....*....|....*....|....*....|....*..
gi 490994061 281 GALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 317
Cdd:COG4214 348 GALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFD 384
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-321 |
3.17e-60 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 196.91 E-value: 3.17e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 23 LIALLVLIAIVSTMSPN-FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 100
Cdd:NF040906 8 LIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAvLMVNWGMPWWLA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 101 VAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNG---SPVNTGFTDNA-----DLFG---------- 162
Cdd:NF040906 88 VLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGqsiGPFPDGFQKISsgflpDLFGgtglhlltll 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 163 ------------------------------WFGIGRPL-----------------GIPTPVWIMAIVFLAAWYMLHHTRL 195
Cdd:NF040906 168 lgvlaaaalvwsqlrgrrrrikyglevepmALFIAKLVliaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTVI 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 196 GRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRI 275
Cdd:NF040906 248 GRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTV 327
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 490994061 276 VGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD--NKKQ 321
Cdd:NF040906 328 VGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDvyNKRK 375
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
23-321 |
3.81e-60 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 195.28 E-value: 3.81e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 23 LIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA 102
Cdd:PRK11285 33 LVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATESLWLGVA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 103 AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVntGFTDNAdlFGWFGIGRPLGIPTPVWIMAIV 182
Cdd:PRK11285 113 AGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAV--GISDER--FFALGYANFFGVPAPIWLTVAC 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 183 FLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVV 262
Cdd:PRK11285 189 FVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACV 268
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 490994061 263 LGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 321
Cdd:PRK11285 269 LGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQ 327
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
8-317 |
3.77e-58 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 189.60 E-value: 3.77e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 8 GRRYFTKAWLMEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVA 87
Cdd:PRK09699 1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 88 ASIVGIEVN-ALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVnTGFtdNADLFGWFGi 166
Cdd:PRK09699 81 AKLMLAGVDpFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV-YGF--SFDFVNFFA- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 167 GRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQ 246
Cdd:PRK09699 157 ASVIGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAE 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490994061 247 PTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 317
Cdd:PRK09699 237 PLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
13-320 |
1.09e-56 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 186.43 E-value: 1.09e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 13 TKAWLMEQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG 92
Cdd:PRK09478 9 FLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 93 I------------EVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTN---GSPVnTGFTDN 157
Cdd:PRK09478 89 SmdnankvfpelaTMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPI-SGFDSG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 158 ADLF--GWFGIGrPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAG 235
Cdd:PRK09478 168 FSTFaqGFVALG-SFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGG 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 236 IIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVL 315
Cdd:PRK09478 247 MLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVA 326
|
....*
gi 490994061 316 VDNKK 320
Cdd:PRK09478 327 LDSLK 331
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
26-305 |
2.12e-48 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 164.36 E-value: 2.12e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 26 LLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVG-IEVNALVAVAAA 104
Cdd:PRK11618 15 FVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGdYGWSPLLAFPLV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 105 LALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGS-PVNTGFTDNADLFGW--FGIGRplgIPTPVWIMAI 181
Cdd:PRK11618 95 LVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESiPINHPFYDTLSSLAWklPGGGR---LSAMALIMLA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 182 VFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAV 261
Cdd:PRK11618 172 VVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAV 251
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 490994061 262 VLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLG-VSSYYQMIV 305
Cdd:PRK11618 252 VIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGtLSSWWTKIV 296
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
53-314 |
1.36e-45 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 155.51 E-value: 1.36e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 53 TSVNAIMAVGMTLVILTSGI-DLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATL 131
Cdd:cd06574 1 GLIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 132 VMMLLLRGVTMVYTNGSPVNTGFTDNAD-LFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATR 210
Cdd:cd06574 81 LIMIGLYSINLRIMGGPNIPLGTRDTLLgLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 211 LSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAG--GKGRIVGTLIGALILGFL 288
Cdd:cd06574 161 SLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRrtIKASILGVIIGAILYRIA 240
|
250 260
....*....|....*....|....*.
gi 490994061 289 NNGLNLLGVSSYYQMIVKAVVILLAV 314
Cdd:cd06574 241 LALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
19-316 |
1.66e-37 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 136.78 E-value: 1.66e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 19 EQKSLIALLVLIAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNAL 98
Cdd:PRK15432 10 ELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 99 VAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNtGFTDNADLFG---WFGIGrPLGiptp 175
Cdd:PRK15432 90 VACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIE-GLPAELKQLSapiLLGIS-PIG---- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 176 vWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGTGYEL 255
Cdd:PRK15432 164 -WLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEM 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490994061 256 DAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVViLLAVLV 316
Cdd:PRK15432 243 KAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLV-LLGVLV 302
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
45-314 |
1.28e-25 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 103.11 E-value: 1.28e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 45 NLFNILQQTSVNAIMAVGMTLVILTSG-IDLSVGSLLALTGAVAA-SIVGIEVNALVAVAAALALGAAIGAVTGVIVAKG 122
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAmLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 123 RVQAFIATLVMMLLLRGVT-MVYTNGSPVNTGFTDNADLFGWFGiGRPLGIPTPVWIMAIVFLAA-WYMLHHTRLGRYIY 200
Cdd:pfam02653 81 KINEVIITLLLNLAALGLAlFLVTGILGGEGGTSGITGPSGFPG-AFLSFAFAFIFLLALLLVLAlWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 201 ALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPT-AGTGYELDAIAAVVLggtslaGGKGRIVGTL 279
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVL------GGAGSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 490994061 280 IGALILGFLNN-GLNLLGVSSYYQMIVKAVVILLAV 314
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
22-315 |
1.04e-22 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 96.44 E-value: 1.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 22 SLIALLVL-IAIVSTMSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVA 100
Cdd:PRK15038 10 ALAALLVIeILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 101 VAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVN---------TGFTDNADLfgwfgigRPLG 171
Cdd:PRK15038 90 ILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGMAGATgyegiggfpMAFTDFANL-------DVLG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 172 IPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTAGT 251
Cdd:PRK15038 163 LPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGA 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490994061 252 GYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVL 315
Cdd:PRK15038 243 SFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
43-316 |
3.73e-17 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 80.11 E-value: 3.73e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 43 VNNLFNILQQTSVNAIMAVGMTLVILTSG-IDLSVGSLLALTGAVAASIVGIevnALVAVAAALALGAAIGAVTGVIV-- 119
Cdd:COG0559 5 LQQLLNGLSLGSIYALIALGLTLIFGVMGvINFAHGEFVMLGAYVAYTLATL---LGLPLWLALLLAVLVAALLGVLLer 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 120 -------AKGRVQAFIATLVMMLLLRGVTMVY--TNGSPVNTGFTDNADLFGwfgigrpLGIPTP-VWIMAI---VFLAA 186
Cdd:COG0559 82 lvirplrGAPPLALLLATIGLSLVLQGLVLLIfgADPRSFPALLSGSVELGG-------VSIPAYrLFIIVValvLLAAL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 187 WYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIeVARLSSAQPTAGTGYELDAIAAVVLGGT 266
Cdd:COG0559 155 WLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVL-LAPIYSVSPTMGFLLGLKAFAAVVLGGL 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 490994061 267 slaggkGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIvkAVVILLAVLV 316
Cdd:COG0559 234 ------GSIPGAVVGGLLLGLAESLGAAYLPSGYKDVV--AFVLLILVLL 275
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
50-316 |
1.69e-16 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 77.86 E-value: 1.69e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 50 LQQTSVNAIMAVGMTLVILTSG-IDLSVGSLLALTGAVAASIVgieVNALVAVAAALALGAAIGAVTGVIV--------- 119
Cdd:cd06582 2 LALGAIYALIALGLTLIFGVTGvINFAHGEFYMLGAYVAYTLL---VALGLPFWLALLLALLVAALLGVLLerlvlrplr 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 120 AKGRVQAFIATLVMMLLLRGVTMVYTnGSPVNTGFTDNADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYI 199
Cdd:cd06582 79 GAPLLTLLITFGGLLILLQGLLLIFG-GDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLRRTRLGRAI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 200 YALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIeVARLSSAQPTAGTGYELDAIAAVVLGGTslaggkGRIVGTL 279
Cdd:cd06582 158 RAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL-LAPITGVSPTMGLLLLLKAFAAVVLGGL------GSIPGAV 230
|
250 260 270
....*....|....*....|....*....|....*..
gi 490994061 280 IGALILGFLNNGLNLLGVSSYYQMIVkaVVILLAVLV 316
Cdd:cd06582 231 VGGLLLGLAESLAAAYLSSGYKDAVA--FVLLILVLL 265
|
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| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
128-316 |
5.89e-15 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 73.63 E-value: 5.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 128 IATLVMMLLLRGV---TMVYTNGSpvnTGFTD-NADLFGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALG 203
Cdd:cd06581 79 IATLAFAEIVRLLalnWSSLTGGS---NGLSGiPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIR 155
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 204 GNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTA-GTGYELDAIAAVVLGGTslaggkGRIVGTLIGA 282
Cdd:cd06581 156 ENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESfGFALSIELLLMVVLGGL------GSLLGPVLGA 229
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170 180 190
....*....|....*....|....*....|....
gi 490994061 283 LILGFLNNGLNLLGvsSYYQMIVKAVVILLAVLV 316
Cdd:cd06581 230 ALLVLLPELLRSLG--PGLRLLVFGLLLILVVLF 261
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| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
127-317 |
8.05e-15 |
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ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 74.00 E-value: 8.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 127 FIATLVMMLLLRGVTMVYTNGSPVNTGFTDNADLFGWFGIGRplgIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNE 206
Cdd:COG4603 154 YIALYLVNYLVRGPLRDPGSGFPQTPPIPESARLPRLLPGTR---LHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNP 230
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 207 AATRLSGISVNKVKIIVYSLCGMLASLAGIIEVA-RLSSAQPTAGTGYELDAIAAVVLGGtslaggkGRIVGTLIGALIL 285
Cdd:COG4603 231 RAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgVQGRLTPGFSPGYGFTGIAVALLGR-------NNPLGIILAALLF 303
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170 180 190
....*....|....*....|....*....|....*.
gi 490994061 286 GFLNNGLNLL----GVSSYYQMIVKAVVILLAVLVD 317
Cdd:COG4603 304 GALYVGGDAMqralGVPSEIVDVIQGLIILFVLAAD 339
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| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
128-316 |
9.85e-14 |
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ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 70.11 E-value: 9.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 128 IATLVMMLLLRGVTMV---YTNGSpvnTGFTDNADL-FGWFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALG 203
Cdd:COG4177 89 IATLAFAEIVRLLALNlesLTGGA---DGLSGIPRPtLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRALRAIR 165
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 204 GNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEVARLSSAQPTA-GTGYELDAIAAVVLGGTslaggkGRIVGTLIGA 282
Cdd:COG4177 166 ENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFLLSIEILLMVVLGGL------GSLLGPVLGA 239
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170 180 190
....*....|....*....|....*....|....
gi 490994061 283 LILGFLNNGLNLLGvssYYQMIVKAVVILLAVLV 316
Cdd:COG4177 240 VLLVLLPELLRSLP---EYRLLIFGLLLILVVLF 270
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| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
176-313 |
3.69e-13 |
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Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 67.85 E-value: 3.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994061 176 VWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGISVNKVKIIVYSLCGMLASLAGIIEV-ARLSSAQPTAGTGYE 254
Cdd:cd06580 98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVlGVQGRFTEGMSAGYG 177
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90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490994061 255 LDAIAAVVLGGtslaggkGRIVGTLIGALILGFLNNGLNLL----GVSSYYQMIVKAVVILLA 313
Cdd:cd06580 178 FIAIAVALLGR-------WNPLGILLAALLFGALEAGGIALqrsgGVPSELVQVLPGIIVLFV 233
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