|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
9-317 |
1.26e-85 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 260.81 E-value: 1.26e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 9 REALLAAVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGI 88
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL-GL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 89 PVAALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNShqMSADFLGLPRASLLGLPLLSW 168
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISG--LPDAFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 169 CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQV 248
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490994239 249 VAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLNERGNKGSGR 317
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
44-308 |
1.52e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 228.06 E-value: 1.52e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 44 TAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHyPGIPVAALLALATLLGLLMGMINGLLVWRLGIPAIVVT 123
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVN-AGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 124 LGTMSIYRGIIFLLSDGGWVNSHQMSADFLgLPRASLLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYT 203
Cdd:cd06579 80 LGTMFILRGLALLITGGRPISGLPPLFSFF-LGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 204 GINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNAL 283
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 490994239 284 PVIGISPFWQMAISGAVIVIAVLLN 308
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
18-308 |
1.01e-46 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 160.65 E-value: 1.01e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 18 ILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHypGIPVAALLALA 97
Cdd:PRK09512 26 LVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGI--EVNALVAVPAA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 98 TLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNS-HQMSADFLG-LPRASLLGLPLLSWCAIAALL 175
Cdd:PRK09512 104 LALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgFTDNADLFGwFGIGRPLGIPTPVWIMAIVFL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 176 LVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIG 255
Cdd:PRK09512 184 AAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLG 263
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 490994239 256 GISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLN 308
Cdd:PRK09512 264 GTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
33-305 |
1.96e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 110.24 E-value: 1.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 33 SPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPVAALLALATLLGLLMGMINGLLV 112
Cdd:NF040906 28 RPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW-GMPWWLAVLLCLLVGALIGAWQGFWV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 113 WRLGIPAIVVTLGTMSIYRGIIFLLSDGGWV-----NSHQMSADFLG--LPRASLLGLPLLSWCAIAALLLV-------- 177
Cdd:NF040906 107 AYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgpfpdGFQKISSGFLPdlFGGTGLHLLTLLLGVLAAAALVWsqlrgrrr 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 178 ----------------------------------------------------GYFLRYSRTGRALYTAGGNATAAYYTGI 205
Cdd:NF040906 187 rikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvySFVTNRTVIGRHIYAVGGNEKAAKLSGI 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 206 NAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPV 285
Cdd:NF040906 267 KTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSI 346
|
330 340
....*....|....*....|
gi 490994239 286 IGISPFWQMAISGAVIVIAV 305
Cdd:NF040906 347 LGIGIDWQQVIKGLVLLAAV 366
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
36-305 |
7.36e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 87.70 E-value: 7.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 36 NLVEMFNDTAILIILALG-QMMVLLTKGIDLSMAANLALtGMIVALLNAHYPGIPVAALLALATLLGLLMGMINGLLVWR 114
Cdd:pfam02653 1 NILNILTLASIYAIAALGlTLIYGIAGVINLGHGGFMML-GAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 115 LGIPAIVVTLGTMSIYRGIIFLLSDG---GWVNSHQMSADFLGLPRASLLGLPLLSWCAIAALLLVGYFLRYSRTGRALY 191
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 192 TAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYV-DVANGFELQVVAACVIGGIstmggtGRVLGCL 270
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 490994239 271 CGALFLGVINN-ALPVIGISPFWQMAISGAVIVIAV 305
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
9-317 |
1.26e-85 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 260.81 E-value: 1.26e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 9 REALLAAVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGI 88
Cdd:COG1172 17 PELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVAL-GL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 89 PVAALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNShqMSADFLGLPRASLLGLPLLSW 168
Cdd:COG1172 96 PILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISG--LPDAFRALGQGSLLGIPVPVL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 169 CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQV 248
Cdd:COG1172 174 IALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELDA 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490994239 249 VAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLNERGNKGSGR 317
Cdd:COG1172 254 IAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
44-308 |
1.52e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 228.06 E-value: 1.52e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 44 TAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHyPGIPVAALLALATLLGLLMGMINGLLVWRLGIPAIVVT 123
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVN-AGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 124 LGTMSIYRGIIFLLSDGGWVNSHQMSADFLgLPRASLLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYT 203
Cdd:cd06579 80 LGTMFILRGLALLITGGRPISGLPPLFSFF-LGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 204 GINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNAL 283
Cdd:cd06579 159 GINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGL 238
|
250 260
....*....|....*....|....*
gi 490994239 284 PVIGISPFWQMAISGAVIVIAVLLN 308
Cdd:cd06579 239 NLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
18-308 |
1.01e-46 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 160.65 E-value: 1.01e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 18 ILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHypGIPVAALLALA 97
Cdd:PRK09512 26 LVLIAIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGI--EVNALVAVPAA 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 98 TLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNS-HQMSADFLG-LPRASLLGLPLLSWCAIAALL 175
Cdd:PRK09512 104 LALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgFTDNADLFGwFGIGRPLGIPTPVWIMAIVFL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 176 LVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIG 255
Cdd:PRK09512 184 AAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLG 263
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 490994239 256 GISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLN 308
Cdd:PRK09512 264 GTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
7-308 |
5.79e-46 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 158.40 E-value: 5.79e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 7 KHREALLAAVVILMIGAIGSRApsFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLnaHYP 86
Cdd:PRK09699 11 KYGTFFILAIIVAIFGSLSPEY--FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKL--MLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 87 GI-PVAALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVnsHQMSADFLGLPRASLLGLPL 165
Cdd:PRK09699 87 GVdPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV--YGFSFDFVNFFAASVIGIPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 166 LSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFE 245
Cdd:PRK09699 165 PVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFE 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490994239 246 LQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLN 308
Cdd:PRK09699 245 TYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
11-305 |
9.35e-45 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 157.20 E-value: 9.35e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 11 ALLAAVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPV 90
Cdd:COG4214 26 GMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNW-GLPW 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 91 AALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNS-----HQMSADFL------------ 153
Cdd:COG4214 105 WLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPfdptfQAIGNGFLpdilgtlswvlg 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 154 ---------------------GLPRASLlGLPLLSWCAIAALLLV-------------------------GYFLRYSRTG 187
Cdd:COG4214 185 avavaayvalqlrsrrrrrryGLPVEPL-WLFVLKLALLAVLILGavyllnsyrgipivvlillvlvvvyTFVLTRTVFG 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 188 RALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGTGRVL 267
Cdd:COG4214 264 RHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVY 343
|
330 340 350
....*....|....*....|....*....|....*...
gi 490994239 268 GCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAV 305
Cdd:COG4214 344 GAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAV 381
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
1-310 |
2.13e-42 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 149.88 E-value: 2.13e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 1 MGRQLLKHREALLAAVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVA- 79
Cdd:PRK15432 1 MLKFIQNNRELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGm 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 80 LLNAHYpGIPVAALLALATLLGLlmGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNShqMSADFLGLPRAS 159
Cdd:PRK15432 81 LLNAGY-SLPVACLATLLLGLLA--GFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEG--LPAELKQLSAPI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 160 LLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVD 239
Cdd:PRK15432 156 LLGISPIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQ 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490994239 240 VANGFELQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLNER 310
Cdd:PRK15432 236 TGTGLEMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGR 306
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
15-310 |
9.36e-41 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 145.22 E-value: 9.36e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 15 AVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVA-LLNA---------H 84
Cdd:PRK09478 20 VVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAAtLLQSmdnankvfpE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 85 YPGIPVAALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSD-------GGWVNSHQMSAdfLGLPR 157
Cdd:PRK09478 100 LATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgaspiSGFDSGFSTFA--QGFVA 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 158 ASLLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAY 237
Cdd:PRK09478 178 LGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSAT 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490994239 238 VDVANGFELQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLNER 310
Cdd:PRK09478 258 NNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSL 330
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
29-317 |
1.95e-38 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 139.04 E-value: 1.95e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 29 PSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVA-LLNAHYPgipVAALLALATLLGLLMGMI 107
Cdd:PRK11285 48 PNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAvVINATES---LWLGVAAGLLLGAAVGLV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 108 NGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNSHQMSadFLGLPRASLLGLPLLSWCAIAALLLVGYFLRYSRTG 187
Cdd:PRK11285 125 NGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDER--FFALGYANFFGVPAPIWLTVACFVVFGFLLNKTTFG 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 188 RALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGTGRVL 267
Cdd:PRK11285 203 RNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGGIAKIS 282
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 490994239 268 GCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLLNERGNKGSGR 317
Cdd:PRK11285 283 GVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAKRT 332
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
33-305 |
1.96e-27 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 110.24 E-value: 1.96e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 33 SPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPVAALLALATLLGLLMGMINGLLV 112
Cdd:NF040906 28 RPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW-GMPWWLAVLLCLLVGALIGAWQGFWV 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 113 WRLGIPAIVVTLGTMSIYRGIIFLLSDGGWV-----NSHQMSADFLG--LPRASLLGLPLLSWCAIAALLLV-------- 177
Cdd:NF040906 107 AYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgpfpdGFQKISSGFLPdlFGGTGLHLLTLLLGVLAAAALVWsqlrgrrr 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 178 ----------------------------------------------------GYFLRYSRTGRALYTAGGNATAAYYTGI 205
Cdd:NF040906 187 rikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvySFVTNRTVIGRHIYAVGGNEKAAKLSGI 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 206 NAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPV 285
Cdd:NF040906 267 KTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVLNNGMSI 346
|
330 340
....*....|....*....|
gi 490994239 286 IGISPFWQMAISGAVIVIAV 305
Cdd:NF040906 347 LGIGIDWQQVIKGLVLLAAV 366
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
14-279 |
7.80e-27 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 107.73 E-value: 7.80e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 14 AAVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYpGIPVAAL 93
Cdd:PRK11618 12 IGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDY-GWSPLLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 94 LALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSDGGWVNSHQMSADFLGLpRASLLGLPLLSWCAIAA 173
Cdd:PRK11618 91 FPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSL-AWKLPGGGRLSAMALIM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 174 LLLVG---YFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVA 250
Cdd:PRK11618 170 LAVVAigiFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIA 249
|
250 260
....*....|....*....|....*....
gi 490994239 251 ACVIGGISTMGGTGRVLGCLCGALFLGVI 279
Cdd:PRK11618 250 AVVIGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
10-306 |
4.14e-21 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 92.20 E-value: 4.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 10 EALLAAVVILMIGAIGSRAPSFVSPGNLVEMFNDTAILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAhyPGIP 89
Cdd:PRK15038 8 ELALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQ--SGVP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 90 VAALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIYRGIIFLLSD----GGWVNSHQMSADFLGLPRASLLGLPL 165
Cdd:PRK15038 86 MPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGmagaTGYEGIGGFPMAFTDFANLDVLGLPV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 166 LSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFE 245
Cdd:PRK15038 166 PLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFL 245
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490994239 246 LQVVAACVIGGISTMGGTGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVL 306
Cdd:PRK15038 246 MPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
36-305 |
7.36e-20 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 87.70 E-value: 7.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 36 NLVEMFNDTAILIILALG-QMMVLLTKGIDLSMAANLALtGMIVALLNAHYPGIPVAALLALATLLGLLMGMINGLLVWR 114
Cdd:pfam02653 1 NILNILTLASIYAIAALGlTLIYGIAGVINLGHGGFMML-GAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 115 LGIPAIVVTLGTMSIYRGIIFLLSDG---GWVNSHQMSADFLGLPRASLLGLPLLSWCAIAALLLVGYFLRYSRTGRALY 191
Cdd:pfam02653 80 LKINEVIITLLLNLAALGLALFLVTGilgGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 192 TAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYV-DVANGFELQVVAACVIGGIstmggtGRVLGCL 270
Cdd:pfam02653 160 AVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGVV 233
|
250 260 270
....*....|....*....|....*....|....*.
gi 490994239 271 CGALFLGVINN-ALPVIGISPFWQMAISGAVIVIAV 305
Cdd:pfam02653 234 IGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
46-305 |
1.71e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 80.78 E-value: 1.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 46 ILIILALGQMMVLLTKGIDLSMAANLALTGMIVALLNAHYPGIPVAALLALATLLGLLmGMINGLLVWRLGIPAIVVTLG 125
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAA-GLVTGFLHTRLKINGLLAGIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 126 TMSIYRGIIFLLSDGGWVNSHQMSADFLGLPRASLLG---LPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYY 202
Cdd:cd06574 82 IMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFGISGtlsIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 203 TGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFELQVVAACVIGGIST--MGGTGRVLGCLCGALFLGVIN 280
Cdd:cd06574 162 LGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRIAL 241
|
250 260
....*....|....*....|....*
gi 490994239 281 NALPVIGISPFWQMAISGAVIVIAV 305
Cdd:cd06574 242 ALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
37-311 |
1.70e-13 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 69.73 E-value: 1.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 37 LVEMFNDTAILIILALGQMMVL-LTKGIDLSMAANLALTGMIVALLNAHYpGIPVAALLALATLLGLLMGMINGLLVWRL 115
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLgYTGLLSLGHAAFFGIGAYAAALLTTHL-GLPFWLALLLAGLVAALLGLLIGLPALRL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 116 -GIPAIVVTLGTMSIYRGIIFLLSD--GGwvnshqmSADFLGLPRASLLGLPL--------LSWCAIAALLLVGYFLRYS 184
Cdd:COG4177 83 rGDYLAIATLAFAEIVRLLALNLESltGG-------ADGLSGIPRPTLFGLDLgsplafyyLVLALLVLVLLLLRRLVRS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 185 RTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVANGFE-LQVVAACVIGGIstmggt 263
Cdd:COG4177 156 RFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESFSFLLsIEILLMVVLGGL------ 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 490994239 264 GRVLGCLCGALFLGVINNALPVIgisPFWQMAISGAVIVIAVLLNERG 311
Cdd:COG4177 230 GSLLGPVLGAVLLVLLPELLRSL---PEYRLLIFGLLLILVVLFRPRG 274
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
45-311 |
4.40e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 62.46 E-value: 4.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 45 AILIILALGQMMVLLTKG-IDLSMAANLALTGMIVALLnAHYPGIPVAALLALATLLGLLMGMINGLLVWRL-GIPAIVV 122
Cdd:cd06581 2 LIYAILALGLNLLLGYAGqLSLGHAAFFGIGAYTAALL-ATRLGLPFWLALLAAGLVAALVGLLLGLPALRLrGVYFAIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 123 TLGTMSIYRGIIFLLSDggWVNSHQ-----MSADFLGLPRASLLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNA 197
Cdd:cd06581 81 TLAFAEIVRLLALNWSS--LTGGSNglsgiPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 198 TAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYVDVAN-GFELQVVAACVIGGIstmggtGRVLGCLCGALFL 276
Cdd:cd06581 159 VAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGfALSIELLLMVVLGGL------GSLLGPVLGAALL 232
|
250 260 270
....*....|....*....|....*....|....*
gi 490994239 277 GVINNALpvIGISPFWQMAISGAVIVIAVLLNERG 311
Cdd:cd06581 233 VLLPELL--RSLGPGLRLLVFGLLLILVVLFLPRG 265
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
120-307 |
5.82e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 62.06 E-value: 5.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 120 IVVTLGTMSIYRGIIFLLSDGGWVNSHQMSADFLGLPRASLLGLPLLSWC-AIAALLLVGYFLRYSRTGRALYTAGGNAT 198
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAvALVLLAALYLFLRRTRLGRAIRAVAQNPE 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 199 AAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVaYVDVANGFELQVVAACVIGGIstmggtGRVLGCLCGALFLGV 278
Cdd:cd06582 166 AARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGL 238
|
170 180
....*....|....*....|....*....
gi 490994239 279 INNALPVIgISPFWQMAISgAVIVIAVLL 307
Cdd:cd06582 239 AESLAAAY-LSSGYKDAVA-FVLLILVLL 265
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
169-307 |
2.75e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 60.08 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 169 CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVAYvDVANGFELQV 248
Cdd:COG0559 146 VALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSP-TMGFLLGLKA 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 490994239 249 VAACVIGGIstmggtGRVLGCLCGALFLGVINNALPVIgISPFWQMAISgAVIVIAVLL 307
Cdd:COG0559 225 FAAVVLGGL------GSIPGAVVGGLLLGLAESLGAAY-LPSGYKDVVA-FVLLILVLL 275
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
72-307 |
4.96e-09 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 55.91 E-value: 4.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 72 ALTGMIVALLNAHYPGIPVAALLALATLLGLLMGMINGLLVWRLGIPAIVVTLGTMSIyrgiifllsdggwvnshqmsad 151
Cdd:cd06580 32 AFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYI---------------------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 152 flglpraSLLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG-YLWI 230
Cdd:cd06580 90 -------ALGLTSYLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaYLVL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490994239 231 SRFAVAYVDVANGFELQVVAACVIGGistmggtGRVLGCLCGALFLGVINNALPVIGISPFWQMAISGAVIVIAVLL 307
Cdd:cd06580 163 GVQGRFTEGMSAGYGFIAIAVALLGR-------WNPLGILLAALLFGALEAGGIALQRSGGVPSELVQVLPGIIVLF 232
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
170-226 |
7.71e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 53.20 E-value: 7.71e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 490994239 170 AIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG 226
Cdd:COG4603 203 ALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAG 259
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
160-295 |
3.13e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 45.06 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 160 LLGLPLLSWCAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCG-YLWISRFAVAYV 238
Cdd:COG1079 144 LFGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGaYLSLGYVGSFTE 223
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490994239 239 DVANGFELQVVAACVIGGistmggtGRVLGCLCGALFLGVIN---NALPVIGI---SPFWQMA 295
Cdd:COG1079 224 GMTAGRGFIALAAVIFGR-------WRPLGALLAALLFGFADalqLRLQALGIgipSQLLLML 279
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
158-311 |
1.50e-04 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 42.99 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490994239 158 ASLLGLPLLSW-CAIAALLLVGYFLRYSRTGRALYTAGGNATAAYYTGINAGKMQFVSFCLSGALAGFCGYLWISRFAVA 236
Cdd:PRK10740 151 ASITTMQAVIWiVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVI 230
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490994239 237 YVDVANGFELQVVAACVIGGIstmggtGRVLGCLCGALFLGvINNALPVIGISPFWQMAISGAVIVIAVLLNERG 311
Cdd:PRK10740 231 NPYIGFMAGMKAFTAAVLGGI------GSIPGAMIGGLILG-IAEALSSAYLSTEYKDVVSFALLILVLLVMPTG 298
|
|
| |
