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Conserved domains on  [gi|491003372|ref|WP_004865093|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit NuoH [Enterobacteriaceae]

Protein Classification

NADH-quinone oxidoreductase subunit H( domain architecture ID 10012656)

NADH-quinone oxidoreductase subunit H (NuoH) is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

EC:  1.6.5.9
Gene Ontology:  GO:0048038|GO:0016655|GO:0005886
PubMed:  23417064|24059520

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-319 1.51e-168

NADH-quinone oxidoreductase subunit NuoH;


:

Pssm-ID: 235692  Cd Length: 322  Bit Score: 471.21  E-value: 1.51e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   1 MSWLTPDLIdiLLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDR 80
Cdd:PRK06076   1 MSLFGPDLL--LLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  81 VIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL 160
Cdd:PRK06076  79 VLFLLAPVIAFIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 161 GLSLMGVVAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG 240
Cdd:PRK06076 159 GLSLLAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 241 EYIGIVTVSALIVTLFFGGWNGPW-----LPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLV 315
Cdd:PRK06076 239 EYINMILVSALITTLFLGGWLPPFplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318

                 ....
gi 491003372 316 TAAV 319
Cdd:PRK06076 319 TAAV 322
 
Name Accession Description Interval E-value
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-319 1.51e-168

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 471.21  E-value: 1.51e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   1 MSWLTPDLIdiLLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDR 80
Cdd:PRK06076   1 MSLFGPDLL--LLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  81 VIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL 160
Cdd:PRK06076  79 VLFLLAPVIAFIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 161 GLSLMGVVAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG 240
Cdd:PRK06076 159 GLSLLAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 241 EYIGIVTVSALIVTLFFGGWNGPW-----LPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLV 315
Cdd:PRK06076 239 EYINMILVSALITTLFLGGWLPPFplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318

                 ....
gi 491003372 316 TAAV 319
Cdd:PRK06076 319 TAAV 322
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
1-324 1.71e-160

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 450.74  E-value: 1.71e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   1 MSWLtpdLIDILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDR 80
Cdd:COG1005    1 MSLL---LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADK 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  81 VIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL 160
Cdd:COG1005   78 FLFLLAPILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 161 GLSLMGVVAQAGSFNMSDIVNNQA-HLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFV 239
Cdd:COG1005  158 GLSLLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 240 GEYIGIVTVSALIVTLFFGGWNGP-------WLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLIN 312
Cdd:COG1005  238 AEYANMFLVSALATTLFLGGWLGPfpilplgGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVN 317
                        330
                 ....*....|..
gi 491003372 313 LLVTAAVILWQA 324
Cdd:COG1005  318 LVLTAAVVLLFG 329
NADHdh pfam00146
NADH dehydrogenase;
17-317 3.50e-144

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 408.40  E-value: 3.50e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   17 KAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAFTSLLL 96
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   97 AFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNM 176
Cdd:pfam00146  81 AFAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  177 SDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSALIVTLF 256
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491003372  257 FGGWNGPW-LPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTA 317
Cdd:pfam00146 241 LGGWLGPFpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
 
Name Accession Description Interval E-value
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-319 1.51e-168

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 471.21  E-value: 1.51e-168
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   1 MSWLTPDLIdiLLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDR 80
Cdd:PRK06076   1 MSLFGPDLL--LLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  81 VIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL 160
Cdd:PRK06076  79 VLFLLAPVIAFIPAFLAWAVIPFGPELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 161 GLSLMGVVAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG 240
Cdd:PRK06076 159 GLSLLAVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLG 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 241 EYIGIVTVSALIVTLFFGGWNGPW-----LPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLV 315
Cdd:PRK06076 239 EYINMILVSALITTLFLGGWLPPFplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318

                 ....
gi 491003372 316 TAAV 319
Cdd:PRK06076 319 TAAV 322
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
1-324 1.71e-160

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 450.74  E-value: 1.71e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   1 MSWLtpdLIDILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDR 80
Cdd:COG1005    1 MSLL---LAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADK 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  81 VIFTLAPVIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL 160
Cdd:COG1005   78 FLFLLAPILAFIPALLAFAVIPFGPGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 161 GLSLMGVVAQAGSFNMSDIVNNQA-HLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFV 239
Cdd:COG1005  158 GLSLLGVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 240 GEYIGIVTVSALIVTLFFGGWNGP-------WLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLIN 312
Cdd:COG1005  238 AEYANMFLVSALATTLFLGGWLGPfpilplgGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVN 317
                        330
                 ....*....|..
gi 491003372 313 LLVTAAVILWQA 324
Cdd:COG1005  318 LVLTAAVVLLFG 329
NADHdh pfam00146
NADH dehydrogenase;
17-317 3.50e-144

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 408.40  E-value: 3.50e-144
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   17 KAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAFTSLLL 96
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   97 AFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFNM 176
Cdd:pfam00146  81 AFAVIPFGPGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  177 SDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSALIVTLF 256
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491003372  257 FGGWNGPW-LPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTA 317
Cdd:pfam00146 241 LGGWLGPFpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
15-310 3.54e-83

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 254.27  E-value: 3.54e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  15 ILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAFTSL 94
Cdd:MTH00054   5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  95 LLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSF 174
Cdd:MTH00054  85 FIAWGVIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 175 NMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSALIVT 254
Cdd:MTH00054 165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491003372 255 LFFGGWNGPWLPP-----FIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTL 310
Cdd:MTH00054 245 LFLGGWLVISGPTsyfsnFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSL 305
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
8-321 8.58e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 250.81  E-value: 8.58e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   8 LIDILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAP 87
Cdd:MTH00216   2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  88 VIAFTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
Cdd:MTH00216  82 VLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 168 VAQAGSFNMSDIVNNQAH-LWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIV 246
Cdd:MTH00216 162 LLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHII 241
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491003372 247 TVSALIVTLFFGGWNGPWLPPFI---WFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVIL 321
Cdd:MTH00216 242 LMSCLTTILFLGGWLSPIKYFKGgagWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLF 319
ndhA CHL00032
NADH dehydrogenase subunit 1
12-318 7.18e-76

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 236.77  E-value: 7.18e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  12 LLSILKAVVILLVVVTCGAF-MSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIA 90
Cdd:CHL00032  26 LIWILVPILTLVLGITIGVLvIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIA 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  91 FTSLLLAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQ 170
Cdd:CHL00032 106 VISILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLL 185
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 171 AGSFNMSDIVNNQAHL----WNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIV 246
Cdd:CHL00032 186 SNSLSTVDIVEAQSKYgfwgWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 247 tVSALIVT-LFFGGWN--GPWLPPFIWFA------------------LKTAFFMMMFILIRASLPRPRYDQVMSFGWKVC 305
Cdd:CHL00032 266 -VSSLFVTvLYLGGWNlsIPYIFIPELFEinktggvfgttigifitlAKTYLFLFISITTRWTLPRLRMDQLLNLGWKFL 344
                        330
                 ....*....|...
gi 491003372 306 LPLTLINLLVTAA 318
Cdd:CHL00032 345 LPISLGNLLLTTS 357
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
8-310 6.09e-75

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 232.98  E-value: 6.09e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   8 LIDILLSILKavvILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAP 87
Cdd:MTH00104   3 MINILLLIIP---ILLAV----AFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAP 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  88 VIAFTSLLLAFAIVPVSPTWVvaDLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
Cdd:MTH00104  76 ILALTLALTMWIPLPMPYPLI--NMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 168 VAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247
Cdd:MTH00104 154 LLMNGSFTLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIM 233
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491003372 248 VSALIVTLFFGGWNGPWLPPF--IWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTL 310
Cdd:MTH00104 234 MNALTTILFLGAFHNPYMPELytTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
16-321 1.48e-74

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 232.99  E-value: 1.48e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  16 LKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAFTSLL 95
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  96 LAFAIVPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQAGSFN 175
Cdd:MTH00029  91 LAWAIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 176 MSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSALIVTL 255
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 256 FFGGW----NGPWLPPFI--------------WFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTA 317
Cdd:MTH00029 251 FLGGWlsplDGIPTPPEAfsifeqiasskssfWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330

                 ....
gi 491003372 318 AVIL 321
Cdd:MTH00029 331 GILI 334
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
5-310 5.92e-74

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 230.55  E-value: 5.92e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   5 TPDLIDILLSILKAVVILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFT 84
Cdd:MTH00111   2 PTLLLNLINPLLYIIPILIAV----AFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFT 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  85 LAPVIAftsLLLAFAI-VPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLS 163
Cdd:MTH00111  78 LTPILA---LLLALTIwTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGII 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 164 LMGVVAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYI 243
Cdd:MTH00111 155 LLSLILLSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYA 234
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491003372 244 GIVTVSALIVTLFFG-GWNGPWLPPF-IWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTL 310
Cdd:MTH00111 235 NILLMNTLTTILFLNpSTLNLPPELFtINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTL 303
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
8-310 7.94e-72

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 225.27  E-value: 7.94e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   8 LIDILLSILKAVVILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAP 87
Cdd:MTH00071   5 ISLIINPLLYIIPVLLAV----AFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  88 VIAFTSLLLAFAIVPVSPTwvVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
Cdd:MTH00071  81 TMALTLALIIWTPLPMPNN--LSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 168 VAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247
Cdd:MTH00071 159 ILLTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILM 238
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491003372 248 VSALIVTLFFGGWNGPWLPPF--IWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTL 310
Cdd:MTH00071 239 MNTLSTILFLGSTYNHLQPELstMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITL 303
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
12-315 3.98e-71

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 222.82  E-value: 3.98e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  12 LLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAF 91
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  92 TSLLLAFAIVPVSptWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQA 171
Cdd:MTH00143  81 ILALLLWQLYPSY--FSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLS 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 172 GSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSAL 251
Cdd:MTH00143 159 GSFSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLL 238
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491003372 252 IVTLFFGGWNGPWLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLV 315
Cdd:MTH00143 239 TVVLFFGGSSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVL 302
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
10-321 8.61e-71

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 222.54  E-value: 8.61e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  10 DILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVI 89
Cdd:MTH00040   2 SVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  90 AFTSLLLAFAIVPVSPTWVvaDLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVA 169
Cdd:MTH00040  82 FLFLALLLWSLIPVPTPTL--NVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVI 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 170 QAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVS 249
Cdd:MTH00040 160 FSGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMN 239
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491003372 250 ALIVTLFFGG---WNGPWLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVIL 321
Cdd:MTH00040 240 LLSVILFLGGgspFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLS 314
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-323 1.29e-70

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 222.17  E-value: 1.29e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   1 MSWLTPDLIDILLSIlkaVVILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDR 80
Cdd:MTH00134   2 LSTLITHIINPLAYI---VPVLLAV----AFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSP 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  81 VIFTLAPVIAFTSLLLAFAIVPVSptWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL 160
Cdd:MTH00134  75 FLFLATPMLALTLALTLWAPMPMP--YPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 161 GLSLMGVVAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVG 240
Cdd:MTH00134 153 GLILLSVIIFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLA 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 241 EYIGIVTVSALIVTLFFGGWNGPWLPPFIWFAL--KTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLinllvtaA 318
Cdd:MTH00134 233 EYANILLMNTLSAILFLGASHIPTLPELTTINLmtKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTL-------A 305

                 ....*
gi 491003372 319 VILWQ 323
Cdd:MTH00134 306 LVIWH 310
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
11-321 1.92e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 218.46  E-value: 1.92e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  11 ILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIA 90
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  91 ftsLLLAFAI-VPVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVA 169
Cdd:MTH00195  81 ---LALALILwVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPIC 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 170 QAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVS 249
Cdd:MTH00195 158 LAGSFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMS 237
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491003372 250 ALIVTLFFGGwngpwlPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVIL 321
Cdd:MTH00195 238 VLTTILFLGG------GGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPF 303
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
12-310 1.80e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 216.05  E-value: 1.80e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  12 LLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAF 91
Cdd:MTH00225   1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  92 TSLLLAFAIVPVSPTwvVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVAQA 171
Cdd:MTH00225  81 ILSLILWSLYPSMFS--IYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLV 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 172 GSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSAL 251
Cdd:MTH00225 159 LTYNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSML 238
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 491003372 252 IVTLFFGGwnGPWLPPFIwFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTL 310
Cdd:MTH00225 239 TSILFFGG--FFVTIDLF-LILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSL 294
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
8-324 3.61e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 215.54  E-value: 3.61e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   8 LIDILLSILKAVVILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAP 87
Cdd:MTH00218   2 LLSLINLLLYILPVLLAV----AFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAP 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  88 VIAFTSLLLAFAIVPVSptWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
Cdd:MTH00218  78 ILALTLALLLWMPLPLP--FSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 168 VAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVT 247
Cdd:MTH00218 156 IILTGGFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILF 235
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491003372 248 VSALIVTLFFGGWNgpwlpPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVILWQA 324
Cdd:MTH00218 236 MNTLSVILFLGTSL-----TTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFA 307
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
8-314 2.89e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 207.70  E-value: 2.89e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   8 LIDILLSILKAVVILLVVVtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAP 87
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSV---AFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSP 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  88 VIaftSLLLAFAIVPVSPT-WVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMG 166
Cdd:MTH00193  78 VF---SLFLSLLIWLIYPYlFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLS 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 167 VVAQAGSFNMSDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIV 246
Cdd:MTH00193 155 FIFLIGSFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSIL 234
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491003372 247 TVSALIVTLFFGGwngpwLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLL 314
Cdd:MTH00193 235 FMSMLFVLMFLGG-----DLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLL 297
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
6-315 1.51e-56

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 185.75  E-value: 1.51e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372   6 PDLIDILLSILKAVVILlvvvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTL 85
Cdd:MTH00010   4 SFFISILLSYVMALLAM-------AFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLG 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  86 APVIAFTSLLLAFAIVPVSPTWVVadLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLM 165
Cdd:MTH00010  77 APMMSLILALLLWSLYPHKHPSFF--LKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILL 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 166 GVVAQAGSFNMSDIVNNQaHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGI 245
Cdd:MTH00010 155 SALLILQTFSFSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANI 233
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 246 VTVSaLIVTLFFGGWNGPWLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLV 315
Cdd:MTH00010 234 LIMS-LFTSVFFTSFIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMI 302
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
15-314 1.71e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 153.52  E-value: 1.71e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  15 ILKAVVILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDWVPRFTDRVIFTLAPVIAFTSL 94
Cdd:MTH00090   3 LLMMIFILQAI----AFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVM 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  95 LLAFAIVPVSPTWVvaDLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGVVaqagSF 174
Cdd:MTH00090  79 YLEWFVLPYFFDFL--SFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIM----LH 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 175 NMSDIVNNQAHLWNvipqFFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIGIVTVSALIVT 254
Cdd:MTH00090 153 NNSFSFVSSFSLSL----FVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSV 228
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 255 LFFGgwngpwlppFIWFALktAFFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLL 314
Cdd:MTH00090 229 LFFK---------FSFLML--FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLG 277
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
12-306 3.58e-37

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 134.93  E-value: 3.58e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  12 LLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPnrvgwgGSLQLVADMIKMFFKEDWVPRfTDRVIFTLAPVIAF 91
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPE-TASWLFRAAPYVAL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  92 TSLLLAFAIVPV----SPTWVVADLnIGILFFLMMAGLAVyavLFAGWSSNNKYSLLGAMRASAQTLSYEVFLGLSLMGV 167
Cdd:COG0650   74 AAMLLAALLVPVlttgPPLSFSGDL-IVLVYLLALARFFL---ALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFAL 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 168 VAQAGSFNMSDIVNNQA--HLWNVIPQF-FGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIG 244
Cdd:COG0650  150 ALLAGSTSLSDIVAYQAahGPLLLSPSLlLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALK 229
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491003372 245 IVTVSALIVTLFFG-GWNGPWLPPFIWFALKTAFFMMMFILIRASLPRPRYDQVMSFGWKVCL 306
Cdd:COG0650  230 LFVLLSLFVNLFLPwGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFL 292
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
12-315 1.23e-36

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 133.13  E-value: 1.23e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  12 LLSILKAVVILLVVvtcgAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMFFKEDwVPRFTDRVIFTLAPVIAF 91
Cdd:MTH00058   5 VSGLEGLLIILLLV----AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFK-VYGFQSRSWFSLFGVFLL 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372  92 TSLLLAFAIVpVSPTWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYE-------VFLGLSL 164
Cdd:MTH00058  80 VLLVVFYCFI-YGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEacfmcivIFCGLCY 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491003372 165 mgvvaqaGSFNMSDIVNNQAHLWNVIPqfFGFVTFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGLFFVGEYIG 244
Cdd:MTH00058 159 -------GSYSLVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLI 229
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491003372 245 IVTVSALIVTLFFGGWNGPWLPPFIWFalktaFFMMMfiliRASLPRPRYDQVMSFGWKVCLPLTLINLLV 315
Cdd:MTH00058 230 IFIFSWLGSVLFFGGGFVSIMLLFHLL-----FFMWA----RATLPRVRYDYFVNFFWEYCLVLLILSLFV 291
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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