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Conserved domains on  [gi|491113511|ref|WP_004971969|]
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MULTISPECIES: MmoB/DmpM family protein [Gammaproteobacteria]

Protein Classification

MmoB/DmpM family protein( domain architecture ID 10493335)

MmoB/DmpM family protein such as Methylococcus capsulatus methane monooxygenase regulatory protein B that acts as a regulator of electron flow through the soluble mmo complex, switching the enzyme from an oxidase to a hydroxylase in the presence of the substrate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MmoB_DmpM pfam02406
MmoB/DmpM family; This family consists of monooxygenase components such as MmoB methane ...
 2-86 6.30e-32

MmoB/DmpM family; This family consists of monooxygenase components such as MmoB methane monooxygenase (EC:1.14.13.25) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilizes intermediates required for the activation of dioxygen. Also found in this family is DmpM or Phenol hydroxylase (EC:1.14.13.7) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase.


:

Pssm-ID: 426759  Cd Length: 85  Bit Score: 106.47  E-value: 6.30e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491113511   2 SKVYLALQDNDTSRYIIEAIEEDNPDATIQYLPAMIRVESETGLIVKAETVSEKLGQDWDIQSLQLNMITLGGNVEEDDD 81
Cdd:pfam02406  1 NTVGPVLQDSEEARAVVEAIEADNPEATVTDRPAYVRIDAEGRLVIRRETIEEALGRPFDLQEFEVNLSSFAGRIDTDDD 80


                 ....*
gi 491113511  82 SFRLH 86
Cdd:pfam02406 81 TITWY 85
 
Name Accession Description Interval E-value
MmoB_DmpM pfam02406
MmoB/DmpM family; This family consists of monooxygenase components such as MmoB methane ...
 2-86 6.30e-32

MmoB/DmpM family; This family consists of monooxygenase components such as MmoB methane monooxygenase (EC:1.14.13.25) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilizes intermediates required for the activation of dioxygen. Also found in this family is DmpM or Phenol hydroxylase (EC:1.14.13.7) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase.


Pssm-ID: 426759  Cd Length: 85  Bit Score: 106.47  E-value: 6.30e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491113511   2 SKVYLALQDNDTSRYIIEAIEEDNPDATIQYLPAMIRVESETGLIVKAETVSEKLGQDWDIQSLQLNMITLGGNVEEDDD 81
Cdd:pfam02406  1 NTVGPVLQDSEEARAVVEAIEADNPEATVTDRPAYVRIDAEGRLVIRRETIEEALGRPFDLQEFEVNLSSFAGRIDTDDD 80


                 ....*
gi 491113511  82 SFRLH 86
Cdd:pfam02406 81 TITWY 85
 
Name Accession Description Interval E-value
MmoB_DmpM pfam02406
MmoB/DmpM family; This family consists of monooxygenase components such as MmoB methane ...
 2-86 6.30e-32

MmoB/DmpM family; This family consists of monooxygenase components such as MmoB methane monooxygenase (EC:1.14.13.25) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilizes intermediates required for the activation of dioxygen. Also found in this family is DmpM or Phenol hydroxylase (EC:1.14.13.7) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase.


Pssm-ID: 426759  Cd Length: 85  Bit Score: 106.47  E-value: 6.30e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491113511   2 SKVYLALQDNDTSRYIIEAIEEDNPDATIQYLPAMIRVESETGLIVKAETVSEKLGQDWDIQSLQLNMITLGGNVEEDDD 81
Cdd:pfam02406  1 NTVGPVLQDSEEARAVVEAIEADNPEATVTDRPAYVRIDAEGRLVIRRETIEEALGRPFDLQEFEVNLSSFAGRIDTDDD 80


                 ....*
gi 491113511  82 SFRLH 86
Cdd:pfam02406 81 TITWY 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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