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Conserved domains on  [gi|491117696|ref|WP_004976151|]
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MULTISPECIES: formyltetrahydrofolate deformylase [Acinetobacter]

Protein Classification

formyltetrahydrofolate deformylase( domain architecture ID 11481955)

formyltetrahydrofolate deformylase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to tetrahydrofolate (FH4) and formate

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
3-287 2.90e-173

formyltetrahydrofolate deformylase; Reviewed


:

Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 479.99  E-value: 2.90e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   3 MTTANTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASnVAERYE 82
Cdd:PRK06027   1 MMMMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQF-VDPETGRFFMRVEFEGDGLIFNLETLRADFAA-LAEEFE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  83 MQWRLALVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKID 162
Cdd:PRK06027  79 MDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 163 ELMQGN--DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQD 240
Cdd:PRK06027 159 ELIDEYqpDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQD 238
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 491117696 241 VERVNHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:PRK06027 239 VIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVF 285
 
Name Accession Description Interval E-value
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
3-287 2.90e-173

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 479.99  E-value: 2.90e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   3 MTTANTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASnVAERYE 82
Cdd:PRK06027   1 MMMMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQF-VDPETGRFFMRVEFEGDGLIFNLETLRADFAA-LAEEFE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  83 MQWRLALVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKID 162
Cdd:PRK06027  79 MDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 163 ELMQGN--DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQD 240
Cdd:PRK06027 159 ELIDEYqpDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQD 238
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 491117696 241 VERVNHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:PRK06027 239 VIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVF 285
PurU COG0788
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ...
7-287 8.43e-172

Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440551 [Multi-domain]  Cd Length: 282  Bit Score: 476.08  E-value: 8.43e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   7 NTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASnVAERYEMQWR 86
Cdd:COG0788    2 TTYILTLSCPDRPGIVAAVTGFLAEHGGNITEADQF-VDPETGRFFMRVEFEAPGLDFDLEALRAAFAP-LAERFGMDWR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  87 LALVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQ 166
Cdd:COG0788   80 LHDSDRRKRVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPLAEWFGIPFHHIPVTKETKAEAEARLLELLE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 167 --GNDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERV 244
Cdd:COG0788  160 eyDIDLVVLARYMQILSPDFCARLPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVERV 239
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 491117696 245 NHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:COG0788  240 DHRDTPEDLVRKGRDVEKRVLARAVRWHLEDRVLVNGNKTVVF 282
PurU TIGR00655
formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. ...
9-287 2.15e-136

formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273199 [Multi-domain]  Cd Length: 280  Bit Score: 386.40  E-value: 2.15e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696    9 ARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASNVAERYEMQWRLA 88
Cdd:TIGR00655   1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQH-TDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTWELI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   89 LVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQGN 168
Cdd:TIGR00655  80 LADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  169 --DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNH 246
Cdd:TIGR00655 160 qvDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDH 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 491117696  247 DFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:TIGR00655 240 TDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTVVF 280
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
94-287 4.01e-114

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 326.83  E-value: 4.01e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  94 KKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQ--GNDLL 171
Cdd:cd08648    1 KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPLAERFGIPFHHIPVTKDTKAEAEAEQLELLEeyGVDLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 172 VLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVD 251
Cdd:cd08648   81 VLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHRDSVE 160
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 491117696 252 QLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:cd08648  161 DLVRKGRDIEKQVLARAVKWHLEDRVLVYGNKTVVF 196
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
94-269 9.72e-41

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 139.35  E-value: 9.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   94 KKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTL--REAVENFGIPFEVVPVNK-ENKREAYAKIDELMQ--GN 168
Cdd:pfam00551   1 MKIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAagLGRAEQAGIPTFVFEHKGlTPRSLFDQELADALRalAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  169 DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDF 248
Cdd:pfam00551  81 DVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDD 160
                         170       180
                  ....*....|....*....|.
gi 491117696  249 TVDQLRELGQDVERNVLARAV 269
Cdd:pfam00551 161 TAETLYNRVADLEHKALPRVL 181
 
Name Accession Description Interval E-value
purU PRK06027
formyltetrahydrofolate deformylase; Reviewed
3-287 2.90e-173

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 235676 [Multi-domain]  Cd Length: 286  Bit Score: 479.99  E-value: 2.90e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   3 MTTANTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASnVAERYE 82
Cdd:PRK06027   1 MMMMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQF-VDPETGRFFMRVEFEGDGLIFNLETLRADFAA-LAEEFE 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  83 MQWRLALVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKID 162
Cdd:PRK06027  79 MDWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEARLL 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 163 ELMQGN--DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQD 240
Cdd:PRK06027 159 ELIDEYqpDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQD 238
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 491117696 241 VERVNHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:PRK06027 239 VIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRVLVYGNKTVVF 285
PurU COG0788
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ...
7-287 8.43e-172

Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440551 [Multi-domain]  Cd Length: 282  Bit Score: 476.08  E-value: 8.43e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   7 NTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASnVAERYEMQWR 86
Cdd:COG0788    2 TTYILTLSCPDRPGIVAAVTGFLAEHGGNITEADQF-VDPETGRFFMRVEFEAPGLDFDLEALRAAFAP-LAERFGMDWR 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  87 LALVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQ 166
Cdd:COG0788   80 LHDSDRRKRVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPLAEWFGIPFHHIPVTKETKAEAEARLLELLE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 167 --GNDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERV 244
Cdd:COG0788  160 eyDIDLVVLARYMQILSPDFCARLPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVERV 239
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 491117696 245 NHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:COG0788  240 DHRDTPEDLVRKGRDVEKRVLARAVRWHLEDRVLVNGNKTVVF 282
PurU TIGR00655
formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. ...
9-287 2.15e-136

formyltetrahydrofolate deformylase; This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 273199 [Multi-domain]  Cd Length: 280  Bit Score: 386.40  E-value: 2.15e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696    9 ARLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASNVAERYEMQWRLA 88
Cdd:TIGR00655   1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQH-TDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTWELI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   89 LVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQGN 168
Cdd:TIGR00655  80 LADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  169 --DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNH 246
Cdd:TIGR00655 160 qvDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDH 239
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 491117696  247 DFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:TIGR00655 240 TDNVEDLIRAGRDIEKVVLARAVKLHLEDRVFVYENKTVVF 280
PRK13011 PRK13011
formyltetrahydrofolate deformylase; Reviewed
11-288 3.22e-120

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 237266 [Multi-domain]  Cd Length: 286  Bit Score: 345.81  E-value: 3.22e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  11 LLITCEDKPGIVQAVSSFLYHQGANITALDQYAtEAQGGRYFMRVEFELDHLQSRkESLLQTFASnVAERYEMQWRLALV 90
Cdd:PRK13011  10 LTLSCPSAAGIVAAVTGFLAEHGCYITELHSFD-DRLSGRFFMRVEFHSEEGLDE-DALRAGFAP-IAARFGMQWELHDP 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  91 SDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQ--GN 168
Cdd:PRK13011  87 AARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEesGA 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 169 DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDF 248
Cdd:PRK13011 167 ELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAY 246
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 491117696 249 TVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVFQ 288
Cdd:PRK13011 247 SPEDLVAKGRDVECLTLARAVKAHIERRVFLNGNRTVVFP 286
FMT_core_Formyl-FH4-Hydrolase_C cd08648
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ...
94-287 4.01e-114

Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.


Pssm-ID: 187717 [Multi-domain]  Cd Length: 196  Bit Score: 326.83  E-value: 4.01e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  94 KKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYAKIDELMQ--GNDLL 171
Cdd:cd08648    1 KRVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPLAERFGIPFHHIPVTKDTKAEAEAEQLELLEeyGVDLV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 172 VLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVD 251
Cdd:cd08648   81 VLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHRDSVE 160
                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 491117696 252 QLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:cd08648  161 DLVRKGRDIEKQVLARAVKWHLEDRVLVYGNKTVVF 196
purU PRK13010
formyltetrahydrofolate deformylase; Reviewed
3-287 4.06e-105

formyltetrahydrofolate deformylase; Reviewed


Pssm-ID: 139334 [Multi-domain]  Cd Length: 289  Bit Score: 307.49  E-value: 4.06e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   3 MTTANTARLLITCEDKPGIVQAVSSFLYHQGANITALDQYATEAQGgRYFMRVEFeldHLQSRKESLLQTFASN---VAE 79
Cdd:PRK13010   4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESG-RFFMRVSF---HAQSAEAASVDTFRQEfqpVAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  80 RYEMQWRLALVSDVKKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLREAVENFGIPFEVVPVNKENKREAYA 159
Cdd:PRK13010  80 KFDMQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEA 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 160 KIDELMQ--GNDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPII 237
Cdd:PRK13010 160 QILDLIEtsGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPII 239
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 491117696 238 EQDVERVNHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVVF 287
Cdd:PRK13010 240 EQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRVFINGDRTVVF 289
PLN02828 PLN02828
formyltetrahydrofolate deformylase
32-287 2.46e-72

formyltetrahydrofolate deformylase


Pssm-ID: 178422  Cd Length: 268  Bit Score: 223.47  E-value: 2.46e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  32 QGANITALDQYATEaQGGRYFMRVEFELDHLQSRKESLLQTFAsNVAERYEMQWRLALVSDVK---KVGILVSKVDHALL 108
Cdd:PLN02828   8 RGGNILGVDVFVPE-NKNVFYSRSEFIFDPVKWPRAQMDEDFQ-EISKHFKALKSVVRVPGLDpkyKIAVLASKQDHCLI 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 109 ELLWRHSRGGLPCEITKVVSNHDT-----LREAVENFGIPFEVVPVNKENKREAyaKIDELMQGNDLLVLARYMQILDEE 183
Cdd:PLN02828  86 DLLHRWQDGRLPVDITCVISNHERgpnthVMRFLERHGIPYHYLPTTKENKRED--EILELVKGTDFLVLARYMQILSGN 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 184 FVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVDQLRELGQDVERN 263
Cdd:PLN02828 164 FLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQ 243
                        250       260
                 ....*....|....*....|....*
gi 491117696 264 VLARAVKWHLEDRIIVDG-NKTVVF 287
Cdd:PLN02828 244 CLAKAIKSYCELRVLPYGtNKTVVF 268
PurN COG0299
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ...
94-286 2.22e-44

Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis


Pssm-ID: 440068 [Multi-domain]  Cd Length: 202  Bit Score: 149.41  E-value: 2.22e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  94 KKVGILVS--------KVDHAllellwrhSRGGLPCEITKVVSNHDT--LREAVENFGIPFEVVPVNKENKREAY-AKID 162
Cdd:COG0299    2 KRIAVLISgrgsnlqaLIDAI--------EAGDLPAEIVLVISNRPDayGLERARAAGIPTFVLDHKDFPSREAFdAALL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 163 ELMQGN--DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQD 240
Cdd:COG0299   74 EALDAYgpDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQA 153
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 491117696 241 VERVNHDFTVDQLRELGQDVERNVLARAVKWHLEDRIIVDGNKTVV 286
Cdd:COG0299  154 AVPVLPDDTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGRRVRL 199
Formyl_trans_N pfam00551
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ...
94-269 9.72e-41

Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.


Pssm-ID: 395436 [Multi-domain]  Cd Length: 181  Bit Score: 139.35  E-value: 9.72e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   94 KKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTL--REAVENFGIPFEVVPVNK-ENKREAYAKIDELMQ--GN 168
Cdd:pfam00551   1 MKIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAagLGRAEQAGIPTFVFEHKGlTPRSLFDQELADALRalAA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  169 DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDF 248
Cdd:pfam00551  81 DVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDD 160
                         170       180
                  ....*....|....*....|.
gi 491117696  249 TVDQLRELGQDVERNVLARAV 269
Cdd:pfam00551 161 TAETLYNRVADLEHKALPRVL 181
FMT_core_GART cd08645
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ...
116-271 3.24e-40

Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.


Pssm-ID: 187714 [Multi-domain]  Cd Length: 183  Bit Score: 137.90  E-value: 3.24e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 116 RGGLPCEITKVVSNHDT---LREAvENFGIPFEVVPVNKENKREAY-AKIDELMQGN--DLLVLARYMQILDEEFVSKWE 189
Cdd:cd08645   22 SGKLNAEIVLVISNNPDaygLERA-KKAGIPTFVINRKDFPSREEFdEALLELLKEYkvDLIVLAGFMRILSPEFLEAFP 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 190 MKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVDQLRELGQDVERNVLARAV 269
Cdd:cd08645  101 GRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGDTPETLAERIHALEHRLYPEAI 180

                 ..
gi 491117696 270 KW 271
Cdd:cd08645  181 KL 182
FMT_core cd08369
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The ...
121-271 2.44e-33

Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.


Pssm-ID: 187712 [Multi-domain]  Cd Length: 173  Bit Score: 120.09  E-value: 2.44e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 121 CEITKVVSNHDTLREAVENFGIPfeVVPVNKENKREAYAKIDELMQ--GNDLLVLARYMQILDEEFVSKWEMKVINIHHS 198
Cdd:cd08369   23 HEIVGVVTHPDSPRGTAQLSLEL--VGGKVYLDSNINTPELLELLKefAPDLIVSINFRQIIPPEILKLPPGGAINIHPS 100
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491117696 199 FLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVDQLRELGQDVERNVLARAVKW 271
Cdd:cd08369  101 LLPRYRGVNPLAWAIINGEKETGVTVHYMDEGIDTGDIIAQEVIPISPDDTAGTLYQRLIELGPKLLKEALQK 173
PurN TIGR00639
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ...
94-278 4.39e-32

phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 161973 [Multi-domain]  Cd Length: 190  Bit Score: 117.09  E-value: 4.39e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   94 KKVGILVSKVDHALLELLWRHSRGGLPCEITKVVSNHDTLR--EAVENFGIPFEVVPVNKENKREAY--AKIDEL-MQGN 168
Cdd:TIGR00639   1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYglERAAQAGIPTFVLSLKDFPSREAFdqAIIEELrAHEV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  169 DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDF 248
Cdd:TIGR00639  81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPED 160
                         170       180       190
                  ....*....|....*....|....*....|
gi 491117696  249 TVDQLRELGQDVERNVLARAVKWHLEDRII 278
Cdd:TIGR00639 161 TEETLEQRIHKQEHRIYPLAIAWFAQGRLK 190
ACT_F4HF-DF cd04875
N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate ...
10-85 2.23e-28

N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153147 [Multi-domain]  Cd Length: 74  Bit Score: 103.79  E-value: 2.23e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491117696  10 RLLITCEDKPGIVQAVSSFLYHQGANITALDQYaTEAQGGRYFMRVEFELDHLQSRKESLLQTFASnVAERYEMQW 85
Cdd:cd04875    1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQF-VDPDSGRFFMRVEFELEGFDLSREALEAAFAP-VAAEFDMDW 74
PLN02331 PLN02331
phosphoribosylglycinamide formyltransferase
141-278 3.91e-13

phosphoribosylglycinamide formyltransferase


Pssm-ID: 177965 [Multi-domain]  Cd Length: 207  Bit Score: 66.64  E-value: 3.91e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 141 GIPFEVVPVNKenKREAYAKIDELM-----QGNDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPY-----K 210
Cdd:PLN02331  49 GIPVLVYPKTK--GEPDGLSPDELVdalrgAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYgikvhK 126
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 211 QAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVDQL--RELGQdvERNVLARAVKWHLEDRII 278
Cdd:PLN02331 127 AVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELaaRVLHE--EHQLYVEVVAALCEERIV 194
PLN02285 PLN02285
methionyl-tRNA formyltransferase
169-256 1.82e-10

methionyl-tRNA formyltransferase


Pssm-ID: 215159 [Multi-domain]  Cd Length: 334  Bit Score: 60.48  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 169 DLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDF 248
Cdd:PLN02285  95 DLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPVIAQERVEVDEDI 174

                 ....*...
gi 491117696 249 TVDQLREL 256
Cdd:PLN02285 175 KAPELLPL 182
FMT_core_Met-tRNA-FMT_N cd08646
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ...
134-255 3.05e-10

Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187715 [Multi-domain]  Cd Length: 204  Bit Score: 58.61  E-value: 3.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 134 REAVENfGIPfeVVPVNKENKREAYAKIDELmqGNDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAY 213
Cdd:cd08646   50 ELALEL-GLP--VLQPEKLKDEEFLEELKAL--KPDLIVVVAYGQILPKEILDLPPYGCINVHPSLLPKYRGAAPIQRAI 124
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 491117696 214 EKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVDQLRE 255
Cdd:cd08646  125 LNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDDTAGELLD 166
Fmt COG0223
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
135-260 1.02e-08

Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];


Pssm-ID: 439993 [Multi-domain]  Cd Length: 308  Bit Score: 55.11  E-value: 1.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 135 EAVENFGIPfeVVPVNKENKREAYAKIDELmqGNDLLVLARYMQILDEEFvskWEM---KVINIHHSFLPAFVGANPYKQ 211
Cdd:COG0223   50 ELALEHGIP--VLQPESLKDPEFLEELRAL--NPDLIVVVAYGQILPKEV---LDIprlGCINLHASLLPRYRGAAPIQW 122
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 491117696 212 AYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTV----DQLRELGQDV 260
Cdd:COG0223  123 AILNGDTETGVTIMQMDEGLDTGDILLQEEVPIGPDDTAgslhDKLAELGAEL 175
FMT_core_like_5 cd08823
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
96-239 4.38e-07

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187725 [Multi-domain]  Cd Length: 177  Bit Score: 48.98  E-value: 4.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696  96 VGILVSkVDHALLELLWRHSRGGL-----PCEITKVVSNHD--TLREAVENFGIpfevvpVNKENKREAYAKIDELMQGN 168
Cdd:cd08823    1 IVILCN-TSMAAPLLGQLLSEGRLagiavPAHNASYFPQIFvfTGIRRLVSKQR------VDTANLKEQLAEWLRALAAD 73
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491117696 169 DLLVLArYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQ 239
Cdd:cd08823   74 TVVVFT-FPYRIPQHILDLPPLGFYNLHPGLLPAYRGPDPLFWQIRNQEQETAITVHKMTAEIDRGPIVLE 143
FMT_core_like_3 cd08653
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
171-245 4.69e-07

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187721 [Multi-domain]  Cd Length: 152  Bit Score: 48.36  E-value: 4.69e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491117696 171 LVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANP-YKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVN 245
Cdd:cd08653   50 VVSVYGCGIIKDALLAIPPLGVLNLHGGILPDYRGVHTgFWALANGDPDNVGVTVHLVDAGIDTGDVLAQARPPLA 125
FMT_core_ArnA_N cd08644
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for ...
130-268 5.06e-07

ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal dehydrogenase domain of ArnA catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O), while the N-terminal formyltransferase domain of ArnA catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the catalytic core of the N-terminal formyltransferase domain. The formyltransferase also contains a smaller C-terminal domain the may be involved in substrate binding. ArnA forms a hexameric structure, in which the dehydrogenase domains are arranged at the center of the particle with the transformylase domains on the outside of the particle.


Pssm-ID: 187713 [Multi-domain]  Cd Length: 203  Bit Score: 49.27  E-value: 5.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 130 HDTLREAVENFGIP-FEVVPVNKENKREAYAKIDElmqgnDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANP 208
Cdd:cd08644   42 FGSVAQLAREHGIPvFTPDDINHPEWVERLRALKP-----DLIFSFYYRHMISEDILEIARLGAFNLHGSLLPKYRGRAP 116
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 209 YKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNHDFTVDQLRELGQDVERNVLARA 268
Cdd:cd08644  117 LNWALINGETETGVTLHRMTKKPDAGAIVDQEKVPILPDDTAKSLFHKLCVAARRLLART 176
ACT pfam01842
ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to ...
10-69 6.59e-07

ACT domain; This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5


Pssm-ID: 426468 [Multi-domain]  Cd Length: 66  Bit Score: 45.76  E-value: 6.59e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696   10 RLLITCEDKPGIVQAVSSFLYHQGANITALDQYATEAQGGRYFMRVEFELDHLQSRKESL 69
Cdd:pfam01842   2 VLEVLVPDRPGLLARVLGALADRGINITSIEQGTSEDKGGIVFVVIVVDEEDLEEVLEAL 61
FMT_core_like_6 cd08820
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ...
152-256 2.88e-05

Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.


Pssm-ID: 187722 [Multi-domain]  Cd Length: 173  Bit Score: 43.58  E-value: 2.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 152 ENKREAYAKIDELMQ--GNDLLVLARYMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTA 229
Cdd:cd08820   52 GSTERNLHKLLEILEnkGVDILISVQYHWILPGSILEKAKEIAFNLHNAPLPEYRGCNQFSHAILNGDDQFGTTIHWMAE 131
                         90       100
                 ....*....|....*....|....*..
gi 491117696 230 DLDQGPIIEQDVERVNHDFTVDQLREL 256
Cdd:cd08820  132 GIDSGDIIFEKRFPIPSDCTVISLYIL 158
ACT cd02116
ACT domains are commonly involved in specifically binding an amino acid or other small ligand ...
11-60 7.80e-05

ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times.


Pssm-ID: 153139 [Multi-domain]  Cd Length: 60  Bit Score: 39.97  E-value: 7.80e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 491117696  11 LLITCEDKPGIVQAVSSFLYHQGANITALDQYATEAQG-GRYFMRVEFELD 60
Cdd:cd02116    1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGeADIFIVVDGDGD 51
GcvR COG2716
Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];
8-59 9.15e-05

Glycine cleavage system regulator GcvR [Amino acid transport and metabolism];


Pssm-ID: 442029 [Multi-domain]  Cd Length: 174  Bit Score: 42.13  E-value: 9.15e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491117696   8 TARLLITCEDKPGIVQAVSSFLYHQGANITALDQYATEAQ---GGRYFMRVEFEL 59
Cdd:COG2716   90 PYVVEVVGNDRPGIVAEVTQFLAERGINIEDLSTKTYPAPmsgTPLFSAQITVHV 144
PRK06988 PRK06988
formyltransferase;
108-268 3.88e-04

formyltransferase;


Pssm-ID: 235902 [Multi-domain]  Cd Length: 312  Bit Score: 41.22  E-value: 3.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 108 LELLwrHSRGglpCEITKVVSNHD---------TLREAVENFGIPFeVVPvNKENKREAYAKIDEL------------MQ 166
Cdd:PRK06988  18 LQVL--LARG---VDVALVVTHEDnpteniwfgSVAAVAAEHGIPV-ITP-ADPNDPELRAAVAAAapdfifsfyyrhMI 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491117696 167 GNDLLVLARymqildeefvskweMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQDVERVNH 246
Cdd:PRK06988  91 PVDLLALAP--------------RGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAVPILP 156
                        170       180
                 ....*....|....*....|..
gi 491117696 247 DFTVDQLRELGQDVERNVLARA 268
Cdd:PRK06988 157 DDTAAQVFDKVTVAAEQTLWRV 178
ACT_Af1403 cd04874
N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid ...
11-56 5.30e-04

N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains; This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.


Pssm-ID: 153146 [Multi-domain]  Cd Length: 72  Bit Score: 37.66  E-value: 5.30e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 491117696  11 LLITCEDKPGIVQAVSSFLYHQGANITALDQYATEAQGGRYFMRVE 56
Cdd:cd04874    3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48
PRK08125 PRK08125
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ...
176-239 3.61e-03

bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;


Pssm-ID: 236156 [Multi-domain]  Cd Length: 660  Bit Score: 38.81  E-value: 3.61e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491117696 176 YMQILDEEFVSKWEMKVINIHHSFLPAFVGANPYKQAYEKGVKLIGATAHYVTADLDQGPIIEQ 239
Cdd:PRK08125  84 YRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQ 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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