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Conserved domains on  [gi|491207686|ref|WP_005066019|]
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MULTISPECIES: phosphoenolpyruvate--protein phosphotransferase [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11061 super family cl32635
phosphoenolpyruvate--protein phosphotransferase;
6-760 0e+00

phosphoenolpyruvate--protein phosphotransferase;


The actual alignment was detected with superfamily member PRK11061:

Pssm-ID: 182937 [Multi-domain]  Cd Length: 748  Bit Score: 742.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   6 LDTLRRIVQEVNASVSLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVLMASKGLNPESVGHVSLQLGEGLVGLVGQR 85
Cdd:PRK11061   2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  86 EEIVNLDNAPKHERFLYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIAHAHAVG 165
Cdd:PRK11061  82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEESFLVTLATQLAAILSQSQLTA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 166 NIDVFRKPSngpayktFQGASGAGGVALGRAIILYPPADLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSL 245
Cdd:PRK11061 162 LFGQYRQTR-------IRALPASPGVAIAEGWQDATQPLLEQVYPASTLDPALERERLTGALEEAANEFRRYSKRFAAGA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 246 MAEERALFSVFLRMLDENALPAEIKELIRDGHWAQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQEEDS 325
Cdd:PRK11061 235 QKETAAIFDLYSHLLNDPRLRRELFAEVDKGSVAEWAVKQVIEKFAEQFAALSDNYLRERAGDLRALGQRLLFHLDDSEQ 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 326 SHRDLSPDSILIGEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVtELPVNTLDDAEMIVDAYQGRV 405
Cdd:PRK11061 315 GPNAWPERFILVADELTATLLAELPQDRLAGVVVRDGAANSHAAILVRALGIPTVMGA-DIQPSLLHQRLLIVDGYRGEL 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 406 FVNPPRRLRQRYKEIQKEDEQIAKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERF 485
Cdd:PRK11061 394 LVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSAEHEEKLGSRVDGVGLYRTEIPFMLQSGF 473
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 486 PGEEEQRAIYRQQLSHFANKPVVMRTLDIGADKDLPYFSIEEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIGLNNLH 565
Cdd:PRK11061 474 PSEEEQVAQYQGMLQMFPDKPVTLRTLDIGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLS 553
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 566 ILLPMVTTVSEVEEVLYLLERDWIAVQEEEQVKITKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNN 645
Cdd:PRK11061 554 ILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLAVDRNN 633
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 646 PHVANVYSHFHPSILRALTRLVKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQK 725
Cdd:PRK11061 634 TRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAGDPMGALLLIGLGYRHLSMNGRSVARVKYLLRHIDLAEAEN 713
                        730       740       750
                 ....*....|....*....|....*....|....*
gi 491207686 726 LLDDVMKMNNPLIVKSWLEYYFKTHGLADMVKSNR 760
Cdd:PRK11061 714 LAQRSLEAQLATEVRHQVAAFMERRGLGGLIRGGK 748
 
Name Accession Description Interval E-value
PRK11061 PRK11061
phosphoenolpyruvate--protein phosphotransferase;
6-760 0e+00

phosphoenolpyruvate--protein phosphotransferase;


Pssm-ID: 182937 [Multi-domain]  Cd Length: 748  Bit Score: 742.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   6 LDTLRRIVQEVNASVSLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVLMASKGLNPESVGHVSLQLGEGLVGLVGQR 85
Cdd:PRK11061   2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  86 EEIVNLDNAPKHERFLYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIAHAHAVG 165
Cdd:PRK11061  82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEESFLVTLATQLAAILSQSQLTA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 166 NIDVFRKPSngpayktFQGASGAGGVALGRAIILYPPADLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSL 245
Cdd:PRK11061 162 LFGQYRQTR-------IRALPASPGVAIAEGWQDATQPLLEQVYPASTLDPALERERLTGALEEAANEFRRYSKRFAAGA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 246 MAEERALFSVFLRMLDENALPAEIKELIRDGHWAQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQEEDS 325
Cdd:PRK11061 235 QKETAAIFDLYSHLLNDPRLRRELFAEVDKGSVAEWAVKQVIEKFAEQFAALSDNYLRERAGDLRALGQRLLFHLDDSEQ 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 326 SHRDLSPDSILIGEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVtELPVNTLDDAEMIVDAYQGRV 405
Cdd:PRK11061 315 GPNAWPERFILVADELTATLLAELPQDRLAGVVVRDGAANSHAAILVRALGIPTVMGA-DIQPSLLHQRLLIVDGYRGEL 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 406 FVNPPRRLRQRYKEIQKEDEQIAKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERF 485
Cdd:PRK11061 394 LVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSAEHEEKLGSRVDGVGLYRTEIPFMLQSGF 473
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 486 PGEEEQRAIYRQQLSHFANKPVVMRTLDIGADKDLPYFSIEEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIGLNNLH 565
Cdd:PRK11061 474 PSEEEQVAQYQGMLQMFPDKPVTLRTLDIGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLS 553
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 566 ILLPMVTTVSEVEEVLYLLERDWIAVQEEEQVKITKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNN 645
Cdd:PRK11061 554 ILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLAVDRNN 633
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 646 PHVANVYSHFHPSILRALTRLVKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQK 725
Cdd:PRK11061 634 TRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAGDPMGALLLIGLGYRHLSMNGRSVARVKYLLRHIDLAEAEN 713
                        730       740       750
                 ....*....|....*....|....*....|....*
gi 491207686 726 LLDDVMKMNNPLIVKSWLEYYFKTHGLADMVKSNR 760
Cdd:PRK11061 714 LAQRSLEAQLATEVRHQVAAFMERRGLGGLIRGGK 748
PtsA COG1080
Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate ...
182-750 0e+00

Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism];


Pssm-ID: 440698 [Multi-domain]  Cd Length: 571  Bit Score: 604.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 182 FQGASGAGGVALGRAIILYPPADlgSVPDR--EAEDISDELRILDQAISSVRSEIRSLDEKMHDSLMAEERALFSVFLRM 259
Cdd:COG1080    1 LKGIAASPGIAIGKAFLLREEDL--EVPEYtiSPEDVEAEIARLEAALAKAREELEALREKAPEDLGEEEAAIFDAHLLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 260 LDENALPAEIKELIRDGHW-AQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQ-EEDSSHRDLSPDSILI 337
Cdd:COG1080   79 LEDPELIEEVEELIREGRYnAEWALKEVIEELAAQFEALDDEYLRERAADIRDVGRRVLRNLLgVEAPDLSDLPEPVILV 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 338 GEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRVFVNPPRRLRQRY 417
Cdd:COG1080  159 AHDLTPSDTAQLDPSRVAGFVTDLGGRTSHTAILARSLGIPAVVGLGDALLLVKDGDLVIVDGDAGVVIVNPDEETLAEY 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 418 KEIQKEDEQIAKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERFPGEEEQRAIYRQ 497
Cdd:COG1080  239 RERQAEYAAERAELARLRDLPAVTLDGVRVELAANIGLPEDAAAALENGAEGVGLFRTEFLFMDRDDLPTEEEQFEAYRA 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 498 QLSHFANKPVVMRTLDIGADKDLPYFSI-EEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIgLNNLHILLPMVTTVSE 576
Cdd:COG1080  319 VAEAMGGRPVTIRTLDIGGDKPLPYLPLpKEENPFLGLRAIRLCLDRPELFRTQLRAILRASA-HGNLRIMFPMISSVEE 397
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 577 VEEVLYLLERdwiaVQEE---EQVKI-TKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNNPHVANVY 652
Cdd:COG1080  398 LRQAKALLEE----AKAElraEGIPFdEDIPVGIMIEVPAAALIADQLAKEVDFFSIGTNDLIQYTLAVDRGNEKVAYLY 473
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 653 SHFHPSILRALTRLVKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQKLLDDVMK 732
Cdd:COG1080  474 DPLHPAVLRLIKMVIDAAHKAGKPVGVCGEMAGDPLATPLLLGLGLDELSMSPSSIPAVKAIIRRLDLAEARALAEKALA 553
                        570
                 ....*....|....*...
gi 491207686 733 MNNPLIVKSWLEYYFKTH 750
Cdd:COG1080  554 LDTAEEVRALLEEFLAEL 571
PTS_I_fam TIGR01417
phosphoenolpyruvate-protein phosphotransferase; This model recognizes a distinct clade of ...
190-733 1.31e-116

phosphoenolpyruvate-protein phosphotransferase; This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.


Pssm-ID: 273611 [Multi-domain]  Cd Length: 565  Bit Score: 363.34  E-value: 1.31e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  190 GVALGRAIILYPPADLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSLMAEERALFSVFLRMLDENALPAEI 269
Cdd:TIGR01417   9 GIAIGKALLLKKPDLVIDRKKISASQVDQEISRFLSARAKAKEDLETIKTKAGKTFGQEKAAIFEAHILILEDPELTEEV 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  270 KELIRDGHW-AQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQ-EEDSSHRDLSPDSILIGEEISTAALV 347
Cdd:TIGR01417  89 IELIKKDHKnAEFAAHEVFEGQAKSLEEMDDEYLKERAADIRDIGNRLLGHLLgVKISDLSEIQDEVILVAEDLTPSETA 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  348 ELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRVFVNPPRRLRQRYKEIQKEDEQI 427
Cdd:TIGR01417 169 QLNLKYVKGFLTDAGGKTSHTAIMARSLEIPAIVGTKSVTSQVKNGDTVIIDGVKGIVIFNPSSETIDKYEAKQEAVSSE 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  428 AKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERFPGEEEQRAIYRQQLSHFANKPV 507
Cdd:TIGR01417 249 KAELAKLKDKPAITLDGHQVELAANIGTVDDVEGAERNGGEGIGLFRTEFLYMSRDQLPTEEEQFAAYKTVLEAMESDAV 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  508 VMRTLDIGADKDLPYF-SIEEENSALGWRGIRFTLDHPEIFSSQIRAMLKASiGLNNLHILLPMVTTVSEVEEVLYLLER 586
Cdd:TIGR01417 329 IVRTLDIGGDKELPYLnFPKEENPFLGYRAIRLALEREEILRTQLRAILRAS-AYGKLRIMFPMVATVEEIRAVKQELEE 407
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  587 DWIAVQEEEQVKITKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNNPHVANVYSHFHPSILRALTRL 666
Cdd:TIGR01417 408 EKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLV 487
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491207686  667 VKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQKLLDDVMKM 733
Cdd:TIGR01417 488 IDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILRIKMIIRKLNIEECKSLAEKALAQ 554
PEP-utilizers_C pfam02896
PEP-utilizing enzyme, PEP-binding domain; This entry represents a TIM barrel domain found at ...
436-718 7.95e-109

PEP-utilizing enzyme, PEP-binding domain; This entry represents a TIM barrel domain found at the C terminus of a number of PEP (phosphoenolpyruvate)-utilizing proteins. In PPDK (Pyruvate phosphate dikinase) this C-terminal domain has been shown to be a PEP-binding domain.


Pssm-ID: 397163 [Multi-domain]  Cd Length: 292  Bit Score: 333.51  E-value: 7.95e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  436 TKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERFPGEEEQRAIYRQQLSHFANKPVVMRTLDIG 515
Cdd:pfam02896   9 DLPAPTADGTKIKVAANIGTPDDAEAALANGAEGIGLYRTEFLFMDRDELPTEDEQFEAYKGVLEAMNGRPVTVRTLDIG 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  516 ADKDLPYFSI-EEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIGlNNLHILLPMVTTVSEVEEVLYLLERdwIAVQEE 594
Cdd:pfam02896  89 GDKELPYLEEpEEMNPFLGWRGIRIGLDRPELFRTQLRAILRASAF-GNLRIMFPMVASVEELREAKAIIEE--VKEELD 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  595 EQVKITKP-KIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNNPHVANVYSHFHPSILRALTRLVKECHEY 673
Cdd:pfam02896 166 AEVGFDKDiKVGIMIEVPSAALLADQLAKEVDFFSIGTNDLTQYTLAVDRDNERVAYLYDPLHPAVLRLIKEVIRAAHRH 245
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 491207686  674 KKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHV 718
Cdd:pfam02896 246 GKWVGICGEMAGDPSAVPLLVGLGLDEFSMSPDSVPRARALLAQI 290
GAF smart00065
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ...
22-164 1.64e-20

Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.


Pssm-ID: 214500 [Multi-domain]  Cd Length: 149  Bit Score: 88.59  E-value: 1.64e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686    22 LHESLDIMVNQVAEAMKVDVCSIYLLDERN-QRYVLMASKGLNPESVGHVSLqLGEGLVGLVGQREEIVNLDNAPKHERF 100
Cdd:smart00065   2 LEELLQTILEELRQLLGADRVLIYLVDENDrGELVLVAADGLTLPTLGIRFP-LDEGLAGRVAETGRPLNIPDVEADPLF 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491207686   101 LYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKL-PQDFSEAAESFLVTLCAQLSGVIAHAHAV 164
Cdd:smart00065  81 AEDLLGRYQGVRSFLAVPLVADGELVGVLALHNKKsPRPFTEEDEELLQALANQLAIALANAQLY 145
 
Name Accession Description Interval E-value
PRK11061 PRK11061
phosphoenolpyruvate--protein phosphotransferase;
6-760 0e+00

phosphoenolpyruvate--protein phosphotransferase;


Pssm-ID: 182937 [Multi-domain]  Cd Length: 748  Bit Score: 742.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   6 LDTLRRIVQEVNASVSLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVLMASKGLNPESVGHVSLQLGEGLVGLVGQR 85
Cdd:PRK11061   2 LTRLREIVEKVASAPRLNEALDILVTETCLAMDTEVCSVYLADHDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRL 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  86 EEIVNLDNAPKHERFLYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIAHAHAVG 165
Cdd:PRK11061  82 AEPINLADAQKHPSFKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQRELRQFDESEESFLVTLATQLAAILSQSQLTA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 166 NIDVFRKPSngpayktFQGASGAGGVALGRAIILYPPADLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSL 245
Cdd:PRK11061 162 LFGQYRQTR-------IRALPASPGVAIAEGWQDATQPLLEQVYPASTLDPALERERLTGALEEAANEFRRYSKRFAAGA 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 246 MAEERALFSVFLRMLDENALPAEIKELIRDGHWAQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQEEDS 325
Cdd:PRK11061 235 QKETAAIFDLYSHLLNDPRLRRELFAEVDKGSVAEWAVKQVIEKFAEQFAALSDNYLRERAGDLRALGQRLLFHLDDSEQ 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 326 SHRDLSPDSILIGEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVtELPVNTLDDAEMIVDAYQGRV 405
Cdd:PRK11061 315 GPNAWPERFILVADELTATLLAELPQDRLAGVVVRDGAANSHAAILVRALGIPTVMGA-DIQPSLLHQRLLIVDGYRGEL 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 406 FVNPPRRLRQRYKEIQKEDEQIAKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERF 485
Cdd:PRK11061 394 LVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSAEHEEKLGSRVDGVGLYRTEIPFMLQSGF 473
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 486 PGEEEQRAIYRQQLSHFANKPVVMRTLDIGADKDLPYFSIEEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIGLNNLH 565
Cdd:PRK11061 474 PSEEEQVAQYQGMLQMFPDKPVTLRTLDIGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLS 553
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 566 ILLPMVTTVSEVEEVLYLLERDWIAVQEEEQVKITKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNN 645
Cdd:PRK11061 554 ILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLAVDRNN 633
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 646 PHVANVYSHFHPSILRALTRLVKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQK 725
Cdd:PRK11061 634 TRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAGDPMGALLLIGLGYRHLSMNGRSVARVKYLLRHIDLAEAEN 713
                        730       740       750
                 ....*....|....*....|....*....|....*
gi 491207686 726 LLDDVMKMNNPLIVKSWLEYYFKTHGLADMVKSNR 760
Cdd:PRK11061 714 LAQRSLEAQLATEVRHQVAAFMERRGLGGLIRGGK 748
PtsA COG1080
Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate ...
182-750 0e+00

Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism];


Pssm-ID: 440698 [Multi-domain]  Cd Length: 571  Bit Score: 604.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 182 FQGASGAGGVALGRAIILYPPADlgSVPDR--EAEDISDELRILDQAISSVRSEIRSLDEKMHDSLMAEERALFSVFLRM 259
Cdd:COG1080    1 LKGIAASPGIAIGKAFLLREEDL--EVPEYtiSPEDVEAEIARLEAALAKAREELEALREKAPEDLGEEEAAIFDAHLLL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 260 LDENALPAEIKELIRDGHW-AQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQ-EEDSSHRDLSPDSILI 337
Cdd:COG1080   79 LEDPELIEEVEELIREGRYnAEWALKEVIEELAAQFEALDDEYLRERAADIRDVGRRVLRNLLgVEAPDLSDLPEPVILV 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 338 GEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRVFVNPPRRLRQRY 417
Cdd:COG1080  159 AHDLTPSDTAQLDPSRVAGFVTDLGGRTSHTAILARSLGIPAVVGLGDALLLVKDGDLVIVDGDAGVVIVNPDEETLAEY 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 418 KEIQKEDEQIAKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERFPGEEEQRAIYRQ 497
Cdd:COG1080  239 RERQAEYAAERAELARLRDLPAVTLDGVRVELAANIGLPEDAAAALENGAEGVGLFRTEFLFMDRDDLPTEEEQFEAYRA 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 498 QLSHFANKPVVMRTLDIGADKDLPYFSI-EEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIgLNNLHILLPMVTTVSE 576
Cdd:COG1080  319 VAEAMGGRPVTIRTLDIGGDKPLPYLPLpKEENPFLGLRAIRLCLDRPELFRTQLRAILRASA-HGNLRIMFPMISSVEE 397
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 577 VEEVLYLLERdwiaVQEE---EQVKI-TKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNNPHVANVY 652
Cdd:COG1080  398 LRQAKALLEE----AKAElraEGIPFdEDIPVGIMIEVPAAALIADQLAKEVDFFSIGTNDLIQYTLAVDRGNEKVAYLY 473
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 653 SHFHPSILRALTRLVKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQKLLDDVMK 732
Cdd:COG1080  474 DPLHPAVLRLIKMVIDAAHKAGKPVGVCGEMAGDPLATPLLLGLGLDELSMSPSSIPAVKAIIRRLDLAEARALAEKALA 553
                        570
                 ....*....|....*...
gi 491207686 733 MNNPLIVKSWLEYYFKTH 750
Cdd:COG1080  554 LDTAEEVRALLEEFLAEL 571
PTS_I_fam TIGR01417
phosphoenolpyruvate-protein phosphotransferase; This model recognizes a distinct clade of ...
190-733 1.31e-116

phosphoenolpyruvate-protein phosphotransferase; This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.


Pssm-ID: 273611 [Multi-domain]  Cd Length: 565  Bit Score: 363.34  E-value: 1.31e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  190 GVALGRAIILYPPADLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSLMAEERALFSVFLRMLDENALPAEI 269
Cdd:TIGR01417   9 GIAIGKALLLKKPDLVIDRKKISASQVDQEISRFLSARAKAKEDLETIKTKAGKTFGQEKAAIFEAHILILEDPELTEEV 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  270 KELIRDGHW-AQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQ-EEDSSHRDLSPDSILIGEEISTAALV 347
Cdd:TIGR01417  89 IELIKKDHKnAEFAAHEVFEGQAKSLEEMDDEYLKERAADIRDIGNRLLGHLLgVKISDLSEIQDEVILVAEDLTPSETA 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  348 ELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRVFVNPPRRLRQRYKEIQKEDEQI 427
Cdd:TIGR01417 169 QLNLKYVKGFLTDAGGKTSHTAIMARSLEIPAIVGTKSVTSQVKNGDTVIIDGVKGIVIFNPSSETIDKYEAKQEAVSSE 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  428 AKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERFPGEEEQRAIYRQQLSHFANKPV 507
Cdd:TIGR01417 249 KAELAKLKDKPAITLDGHQVELAANIGTVDDVEGAERNGGEGIGLFRTEFLYMSRDQLPTEEEQFAAYKTVLEAMESDAV 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  508 VMRTLDIGADKDLPYF-SIEEENSALGWRGIRFTLDHPEIFSSQIRAMLKASiGLNNLHILLPMVTTVSEVEEVLYLLER 586
Cdd:TIGR01417 329 IVRTLDIGGDKELPYLnFPKEENPFLGYRAIRLALEREEILRTQLRAILRAS-AYGKLRIMFPMVATVEEIRAVKQELEE 407
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  587 DWIAVQEEEQVKITKPKIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNNPHVANVYSHFHPSILRALTRL 666
Cdd:TIGR01417 408 EKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLV 487
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491207686  667 VKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHVPMTDAQKLLDDVMKM 733
Cdd:TIGR01417 488 IDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILRIKMIIRKLNIEECKSLAEKALAQ 554
PEP-utilizers_C pfam02896
PEP-utilizing enzyme, PEP-binding domain; This entry represents a TIM barrel domain found at ...
436-718 7.95e-109

PEP-utilizing enzyme, PEP-binding domain; This entry represents a TIM barrel domain found at the C terminus of a number of PEP (phosphoenolpyruvate)-utilizing proteins. In PPDK (Pyruvate phosphate dikinase) this C-terminal domain has been shown to be a PEP-binding domain.


Pssm-ID: 397163 [Multi-domain]  Cd Length: 292  Bit Score: 333.51  E-value: 7.95e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  436 TKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLRERFPGEEEQRAIYRQQLSHFANKPVVMRTLDIG 515
Cdd:pfam02896   9 DLPAPTADGTKIKVAANIGTPDDAEAALANGAEGIGLYRTEFLFMDRDELPTEDEQFEAYKGVLEAMNGRPVTVRTLDIG 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  516 ADKDLPYFSI-EEENSALGWRGIRFTLDHPEIFSSQIRAMLKASIGlNNLHILLPMVTTVSEVEEVLYLLERdwIAVQEE 594
Cdd:pfam02896  89 GDKELPYLEEpEEMNPFLGWRGIRIGLDRPELFRTQLRAILRASAF-GNLRIMFPMVASVEELREAKAIIEE--VKEELD 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  595 EQVKITKP-KIGIMVEVPSVLLQIDEFAELVDFFSVGSNDLTQYLLAVDRNNPHVANVYSHFHPSILRALTRLVKECHEY 673
Cdd:pfam02896 166 AEVGFDKDiKVGIMIEVPSAALLADQLAKEVDFFSIGTNDLTQYTLAVDRDNERVAYLYDPLHPAVLRLIKEVIRAAHRH 245
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 491207686  674 KKPISICGEMAGDPLSAILLMAMGFNTLSMSSSNILRVRKAICHV 718
Cdd:pfam02896 246 GKWVGICGEMAGDPSAVPLLVGLGLDEFSMSPDSVPRARALLAQI 290
PRK11177 PRK11177
phosphoenolpyruvate-protein phosphotransferase PtsI;
239-733 1.14e-106

phosphoenolpyruvate-protein phosphotransferase PtsI;


Pssm-ID: 183017 [Multi-domain]  Cd Length: 575  Bit Score: 337.75  E-value: 1.14e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 239 EKMHDSLMAEERALFSVFLRMLDENALPAEIKELIRDGHW-AQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRI- 316
Cdd:PRK11177  59 TKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMtADAAAHSVIEGQAKALEELDDEYLKERAADVRDIGKRLl 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 317 ----------LASLQEEdsshrdlspdSILIGEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTEL 386
Cdd:PRK11177 139 knilglkiidLSAIQEE----------VILVAADLTPSETAQLNLKKVLGFITDIGGRTSHTSIMARSLELPAIVGTGNI 208
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 387 PVNTLDDAEMIVDAYQGRVFVNPPRRLRQRYKEIQKEDEQIAKDLKQYETKEAITPDGVSVQLYVNTGLMIDVVRGVQRG 466
Cdd:PRK11177 209 TKQVKNGDYLILDAVNNQIYVNPTNEVIEELKAVQEQYASEKAELAKLKDLPAITLDGHQVEVCANIGTVRDVEGAERNG 288
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 467 AQGVGLYRSEIPFMLRERFPGEEEQRAIYRQQLSHFANKPVVMRTLDIGADKDLPYFSI-EEENSALGWRGIRFTLDHPE 545
Cdd:PRK11177 289 AEGVGLYRTEFLFMDRDALPTEEEQFQAYKAVAEAMGSQAVIVRTMDIGGDKELPYMNLpKEENPFLGWRAIRIAMDRKE 368
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 546 IFSSQIRAMLKASiGLNNLHILLPMVTTVSEVEEVLYLLERDWIAVQEEEQVKITKPKIGIMVEVPSVLLQIDEFAELVD 625
Cdd:PRK11177 369 ILHDQLRAILRAS-AFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKEVD 447
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 626 FFSVGSNDLTQYLLAVDRNNPHVANVYSHFHPSILRALTRLVKECHEYKKPISICGEMAGDPLSAILLMAMGFNTLSMSS 705
Cdd:PRK11177 448 FFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATLLLLGMGLDEFSMSA 527
                        490       500
                 ....*....|....*....|....*...
gi 491207686 706 SNILRVRKAICHVPMTDAQKLLDDVMKM 733
Cdd:PRK11177 528 ISIPRIKKIIRNTNFEDAKALAEQALAQ 555
PtsP COG3605
Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];
5-185 6.88e-69

Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms];


Pssm-ID: 442824 [Multi-domain]  Cd Length: 188  Bit Score: 224.78  E-value: 6.88e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   5 QLDTLRRIVQEVNASVSLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVLMASKGLNPESVGHVSLQLGEGLVGLVGQ 84
Cdd:COG3605    2 MLKALRRISEAVASALDLDEALDRIVRRIAEALGVDVCSIYLLDPDGGRLELRATEGLNPEAVGKVRLPLGEGLVGLVAE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  85 REEIVNLDNAPKHERFLYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIAHAHAV 164
Cdd:COG3605   82 RGEPLNLADAASHPRFKYFPETGEEGFRSFLGVPIIRRGRVLGVLVVQSREPREFTEEEVEFLVTLAAQLAEAIANAELL 161
                        170       180
                 ....*....|....*....|.
gi 491207686 165 GNIDVFRKPSNGPAYKTFQGA 185
Cdd:COG3605  162 GELRAALAELSLAREEEREAA 182
PRK06464 PRK06464
phosphoenolpyruvate synthase; Validated
355-715 4.69e-56

phosphoenolpyruvate synthase; Validated


Pssm-ID: 235809 [Multi-domain]  Cd Length: 795  Bit Score: 205.75  E-value: 4.69e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 355 AAIVTSEGAANSHMVIVARALGIPTVVG---VTElpvnTLDDAEMI----VDAYQGRVfvnpprrlrqrYK-EIQKEDEQ 426
Cdd:PRK06464 406 SAIVTNRGGRTCHAAIIARELGIPAVVGtgnATE----VLKDGQEVtvscAEGDTGYV-----------YEgLLEFEVEE 470
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 427 IAKDlkqyetKEAITPdgvsVQLYVNTGlMIDVV-RGVQRGAQGVGLYRSEipFM------------------------- 480
Cdd:PRK06464 471 VSLE------EMPETP----TKIMMNVG-NPERAfDFAALPNDGVGLARLE--FIinnmigvhplallefdqqdadlkae 537
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 481 LRERFPGEEEQRAIYRQQLSH--------FANKPVVMRTLD---------IGADKDLPyfsiEEENSALGWRGIRFTLDH 543
Cdd:PRK06464 538 IEELTAGYASPEEFYVDKLAEgiatvaaaFYPKPVIVRLSDfksneyanlIGGERYEP----EEENPMLGFRGASRYLSE 613
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 544 P--EIFSSQIRAMLKA--SIGLNNLHILLPMVTTVSEVEEVLYLLERDWIAVQEEEQvkitkpKIGIMVEVPSVLLQIDE 619
Cdd:PRK06464 614 SfrEAFALECEAIKRVreEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGL------KVIMMCEIPSNALLAEE 687
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 620 FAELVDFFSVGSNDLTQYLLAVDRNNPHVANVYSHFHPSILRALTRLVKECHEYKKPISICGEMAGD-PLSAILLMAMGF 698
Cdd:PRK06464 688 FLEYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDhPDFAEWLVEEGI 767
                        410
                 ....*....|....*..
gi 491207686 699 NTLSMSSSNILRVRKAI 715
Cdd:PRK06464 768 DSISLNPDAVVDTWLAV 784
PEP-utilizers_N pfam05524
PEP-utilizing enzyme, N-terminal;
183-305 7.44e-26

PEP-utilizing enzyme, N-terminal;


Pssm-ID: 461671 [Multi-domain]  Cd Length: 125  Bit Score: 103.08  E-value: 7.44e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  183 QGASGAGGVALGRAIILYPPA-DLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSLMAEERALFSVFLRMLD 261
Cdd:pfam05524   1 KGIGASPGIAIGKAVVLEEPElEVPDEREVPADDVEAEIARLEAALEAAREELEALAERAAGELGEEEAAIFEAHLMMLE 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 491207686  262 ENALPAEIKELIRDGH-WAQGAVRRVIEKHTALFAQMEDDYLRER 305
Cdd:pfam05524  81 DPELLEEVEELIREGGlNAEAAVKEVVDEFAAMFEAMDDPYLRER 125
PRK11377 PRK11377
dihydroxyacetone kinase subunit M; Provisional
183-405 9.23e-22

dihydroxyacetone kinase subunit M; Provisional


Pssm-ID: 183108 [Multi-domain]  Cd Length: 473  Bit Score: 99.44  E-value: 9.23e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 183 QGASGAGGVALGRAIIlYPPAdLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMHDSLMAEERALFSVFLRMLDE 262
Cdd:PRK11377 248 PTLRPVPSPVSGKAFY-YQPV-LCTVQAKSTLTVEEEQERLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDD 325
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 263 NALPAEIKELIRDGHW-AQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQEEDSSHRDLSPDSILIGEEI 341
Cdd:PRK11377 326 PELLAAASERLQHEHCtAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQFNSPTILLAENI 405
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491207686 342 STAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRV 405
Cdd:PRK11377 406 YPSTVLQLDPAVVKGICLSAGSPLSHSAIIARELGIGWICQQGEKLYAIQPEETLTLDVKTQRL 469
GAF smart00065
Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these ...
22-164 1.64e-20

Domain present in phytochromes and cGMP-specific phosphodiesterases; Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.


Pssm-ID: 214500 [Multi-domain]  Cd Length: 149  Bit Score: 88.59  E-value: 1.64e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686    22 LHESLDIMVNQVAEAMKVDVCSIYLLDERN-QRYVLMASKGLNPESVGHVSLqLGEGLVGLVGQREEIVNLDNAPKHERF 100
Cdd:smart00065   2 LEELLQTILEELRQLLGADRVLIYLVDENDrGELVLVAADGLTLPTLGIRFP-LDEGLAGRVAETGRPLNIPDVEADPLF 80
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491207686   101 LYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKL-PQDFSEAAESFLVTLCAQLSGVIAHAHAV 164
Cdd:smart00065  81 AEDLLGRYQGVRSFLAVPLVADGELVGVLALHNKKsPRPFTEEDEELLQALANQLAIALANAQLY 145
PEP-utilizers pfam00391
PEP-utilizing enzyme, mobile domain; This domain is a "swivelling" beta/beta/alpha domain ...
329-403 5.81e-19

PEP-utilizing enzyme, mobile domain; This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it.


Pssm-ID: 459796 [Multi-domain]  Cd Length: 73  Bit Score: 81.69  E-value: 5.81e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491207686  329 DLSPDSILIGEEISTAALVELpvDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQG 403
Cdd:pfam00391   1 KLPEGVILVAPDTTPSDTAGL--DKAAGIVTERGGMTSHAAIVARELGIPAVVGVGDATILLKEGDLVTVDGSTG 73
GAF COG2203
GAF domain [Signal transduction mechanisms];
5-501 3.78e-18

GAF domain [Signal transduction mechanisms];


Pssm-ID: 441805 [Multi-domain]  Cd Length: 712  Bit Score: 89.10  E-value: 3.78e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   5 QLDTLRRIVQEVNASVSLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVLMASKGLNPESVGHvsLQLGEGLVGLVGQ 84
Cdd:COG2203  191 RLALLNEISQALRSALDLEELLQRILELAGELLGADRGAILLVDEDGGELELVAAPGLPEEELGR--LPLGEGLAGRALR 268
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  85 REEIVNLDNAPKHERF--LYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIAHAH 162
Cdd:COG2203  269 TGEPVVVNDASTDPRFapSLRELLLALGIRSLLCVPLLVDGRLIGVLALYSKEPRAFTEEDLELLEALADQAAIAIERAR 348
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 163 AVGNIDVFRKPSNGPAYKTFQGASGAGGVALGRAIILYPPADLGSVPDREAEDISDELRILDQAISSVRSEIRSLDEKMH 242
Cdd:COG2203  349 LYEALEAALAALLQELALLRLLLDLELTLLRLRQLLLELLLALLLLLSLLGAELLLLLLDAADLSGLLALEGLLLLDLLL 428
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 243 DSLMAEERALFSVFLRMLDENALPAEIKELIRDGHWAQGAVRRVIEKHTALFAQMEDDYLRERVSDLKDLGRRILASLQE 322
Cdd:COG2203  429 LLLLLRRILLLRVLRRLLLGDEEGLVLLLALAELELLEILELLVLLAVILLALALLAALLLLLLLLLALLALSALAVLAS 508
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 323 EDSSHRDLSPDSILIGEEISTAALVELPVDNIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQ 402
Cdd:COG2203  509 LLLALLLLLLLLLLLLLLGLLAALAADLLLLAAALLEDLLILLLVLLLERELLTLVGVLLLLGLSVLLIELALALILALA 588
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686 403 GRVFVNPPRRLRQRYKEIQKEDEQIAKDLkqyETKEAITPDGVSVQLYVNTGLMIDVVRGVQRGAQGVGLYRSEIPFMLR 482
Cdd:COG2203  589 LLELLLVAVGDLLLLERDLLLLLVLLVRL---LLELLVVTLELTVLVVLAAVEDSALLLRLALALASLVLLRALLATELD 665
                        490
                 ....*....|....*....
gi 491207686 483 ERFPGEEEQRAIYRQQLSH 501
Cdd:COG2203  666 LILDSSLLLGLLLLGALLL 684
GAF pfam01590
GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl ...
21-158 9.24e-16

GAF domain; This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54. This domain can bind biliverdine and phycocyanobilin (Matilla et al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 460259 [Multi-domain]  Cd Length: 133  Bit Score: 74.44  E-value: 9.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   21 SLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVlmaSKGLNPESVGHVSLQLGEGlvGLVGQREEIVNLDNAPKHERF 100
Cdd:pfam01590   1 DLEEILQTILEELRELLGADRCALYLPDADGLEYL---PPGARWLKAAGLEIPPGTG--VTVLRTGRPLVVPDAAGDPRF 75
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 491207686  101 LYLPETGEEI-YNSFLGVPVMYRRKVMGVLVVQNKLPQdFSEAAESFLVTLCAQLSGVI 158
Cdd:pfam01590  76 LDPLLLLRNFgIRSLLAVPIIDDGELLGVLVLHHPRPP-FTEEELELLEVLADQVAIAL 133
GAF_2 pfam13185
GAF domain; The GAF domain is named after some of the proteins it is found in, including ...
19-159 9.49e-13

GAF domain; The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 433019 [Multi-domain]  Cd Length: 137  Bit Score: 65.95  E-value: 9.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   19 SVSLHESLDIMVNQVAEAMKVDVCSIYLLDERNQryvLMASKGLNPESVGHVSLQLGEGLVGLVGQREEIVNLDNAPKHE 98
Cdd:pfam13185   1 AADLEELLDAVLEAAVELGASAVGFILLVDDDGR---LAAWGGAADELSAALDDPPGEGLVGEALRTGRPVIVNDLAADP 77
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491207686   99 RFLYLPEtGEEIYNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIA 159
Cdd:pfam13185  78 AKKGLPA-GHAGLRSFLSVPLVSGGRVVGVLALGSNRPGAFDEEDLELLELLAEQAAIAIE 137
GAF_3 pfam13492
GAF domain;
21-160 4.36e-08

GAF domain;


Pssm-ID: 433253 [Multi-domain]  Cd Length: 129  Bit Score: 52.37  E-value: 4.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   21 SLHESLDIMVNQVAEAMKVDVCSIYLLDERNQRYVLMASKGLNPESVGHVSLQlgEGLVGLVGQREEIVNLDNAPKherf 100
Cdd:pfam13492   1 SLDEILEALLKLLVRLLGAERAAVYLLDEDGNKLQVAAGYDGEPDPSESLDAD--SPLARRALSSGEPISGLGSAG---- 74
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  101 lylpETGEEIYNSFLgVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIAH 160
Cdd:pfam13492  75 ----EDGLPDGPALV-VPLVAGRRVIGVLALASSKPRAFDAEDLRLLESLAAQIATAIEN 129
PykA2 COG3848
Phosphohistidine swiveling domain of PEP-utilizing enzymes [Signal transduction mechanisms];
353-406 7.22e-08

Phosphohistidine swiveling domain of PEP-utilizing enzymes [Signal transduction mechanisms];


Pssm-ID: 443058  Cd Length: 321  Bit Score: 54.91  E-value: 7.22e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491207686 353 NIAAIVTSEGAANSHMVIVARALGIPTVVGVtELPVNTLDDAEMI-VDAYQGRVF 406
Cdd:COG3848  261 KAAGIITEEGGLTSHAAIVGLELGIPVIVGA-EGATEILKDGQVVtVDAERGVVY 314
PpsA COG0574
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and ...
354-405 7.58e-08

Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase is part of the Pathway/BioSystem: Gluconeogenesis


Pssm-ID: 440339 [Multi-domain]  Cd Length: 455  Bit Score: 55.61  E-value: 7.58e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 491207686 354 IAAIVTSEGAANSHMVIVARALGIPTVVGV---TElpvnTLDDAEMI-VDAYQGRV 405
Cdd:COG0574  403 AAGIVTERGGMTSHAAIVARELGIPAVVGCgdaTR----VLKDGDEItVDGTTGEV 454
PRK05878 PRK05878
pyruvate phosphate dikinase; Provisional
355-406 4.46e-06

pyruvate phosphate dikinase; Provisional


Pssm-ID: 235635 [Multi-domain]  Cd Length: 530  Bit Score: 50.13  E-value: 4.46e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 491207686 355 AAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRVF 406
Cdd:PRK05878 401 QGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVR 452
MsrC COG1956
GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, ...
17-159 5.34e-06

GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, Signal transduction mechanisms];


Pssm-ID: 441559 [Multi-domain]  Cd Length: 156  Bit Score: 47.13  E-value: 5.34e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686  17 NASVSLHESLDimvnqvaeamKVDVCSIYLLDERNQrYVLMASKGLnpesVGHVSLQLGEGLVGLVGQREEIVNLDNAPK 96
Cdd:COG1956   32 NISALLFEALP----------DYNWVGFYLVDGGGE-LVLGPFQGP----PACTRIPFGKGVCGTAAAEGETQLVPDVHA 96
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491207686  97 HERFLYL-PETgeeiyNSFLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVIA 159
Cdd:COG1956   97 FPGHIACdSAS-----RSEIVVPIFKDGEVIGVLDIDSPTPGRFDEEDQAGLEALAALLAEALD 155
PRK05849 PRK05849
hypothetical protein; Provisional
353-407 4.90e-05

hypothetical protein; Provisional


Pssm-ID: 235623 [Multi-domain]  Cd Length: 783  Bit Score: 46.90  E-value: 4.90e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 491207686 353 NIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIV-DAYQGRVFV 407
Cdd:PRK05849 727 GIAGLITCYGGANSHMAIRAAELGLPAVIGVGEELFEKWLKAKRILlDCASQRIEI 782
PRK06354 PRK06354
pyruvate kinase; Provisional
353-406 2.14e-04

pyruvate kinase; Provisional


Pssm-ID: 235784 [Multi-domain]  Cd Length: 590  Bit Score: 44.53  E-value: 2.14e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491207686 353 NIAAIVTSEGAANSHMVIVARALGIPTVVGVTELPVNTLDDAEMIVDAYQGRVF 406
Cdd:PRK06354 530 KAAAIITEEGGLTSHAAVVGLRLGIPVIVGVKNATSLIKDGQIITVDAARGVVY 583
FhlA COG3604
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ...
114-158 5.53e-04

FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 442823 [Multi-domain]  Cd Length: 338  Bit Score: 42.91  E-value: 5.53e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 491207686 114 FLGVPVMYRRKVMGVLVVQNKLPQDFSEAAESFLVTLCAQLSGVI 158
Cdd:COG3604   76 FLGVPLRVGGEVLGVLTLDSRRPGAFSEEDLRLLETLASLAAVAI 120
PRK08296 PRK08296
hypothetical protein; Provisional
354-405 1.04e-03

hypothetical protein; Provisional


Pssm-ID: 181362  Cd Length: 603  Bit Score: 42.33  E-value: 1.04e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 491207686 354 IAAIVTSEGAANSHMVIVARALGIPTVVGvTELPVNTLDDAEMI-VDAYQGRV 405
Cdd:PRK08296 548 IKATVTDIGGVMSHAAIVCREYGLPAVVG-TGNATKRIKTGQRLrVDGTKGVV 599
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
186-438 5.78e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 40.44  E-value: 5.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   186 SGA--GGVALGRAIILYPPADLGSVP---------DREAEDISDELRILDQAISSVRSEI----RSLDEKMHD-SLMAEE 249
Cdd:TIGR02169  652 SGAmtGGSRAPRGGILFSRSEPAELQrlrerleglKRELSSLQSELRRIENRLDELSQELsdasRKIGEIEKEiEQLEQE 731
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   250 RALFS-------VFLRMLDEN--ALPAEIKELIRDghwaQGAVRRVIEKHTALFAQMEDDYLRERV-------SDLKDLG 313
Cdd:TIGR02169  732 EEKLKerleeleEDLSSLEQEieNVKSELKELEAR----IEELEEDLHKLEEALNDLEARLSHSRIpeiqaelSKLEEEV 807
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491207686   314 RRILASLQEEDSSHRDLSPDSILIGEEISTA-ALVELPVDNIAAIVTSEGAANSHmvivaralgiptvvgvtelpvntLD 392
Cdd:TIGR02169  808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELqEQRIDLKEQIKSIEKEIENLNGK-----------------------KE 864
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 491207686   393 DAEMIVDAYQGRVfvnppRRLRQRYKEIQKEDEQIAKDLKQYETKE 438
Cdd:TIGR02169  865 ELEEELEELEAAL-----RDLESRLGDLKKERDELEAQLRELERKI 905
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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