|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
1-434 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 739.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 1 MFESLSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNE 80
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 81 ELIGILGGETRQLAFAKTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYA 160
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 161 PHPGtadgglevgslvGDPVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDA 240
Cdd:COG0541 161 EEDG------------KDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 241 VSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILGMGDLLSLIEQAEQ 320
Cdd:COG0541 229 VNVAKAFNEALGLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQE 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 321 HFDAEQSLAAAEKITSGELTLEDFLEQMLAIRKMGPIGNLLGMLPGAGQMK-DALAAVDDKQLDRVQAIIRGMTPAERAD 399
Cdd:COG0541 309 AIDEEEAEKLAKKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKqLKDLDIDEKELKRIEAIINSMTPEERRN 388
|
410 420 430
....*....|....*....|....*....|....*
gi 491211271 400 PKIINASRRLRIANGSGVAVSEVNQLVDRFFEARK 434
Cdd:COG0541 389 PDIINGSRKRRIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
2-438 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 628.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 2 FESLSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNEE 81
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 82 LIGILGGETRQLAFAKTPPTVVMLAGLQGAGKTTLAGKLAKWL-KGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYA 160
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLkKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 161 PHPGTadgglevgslvgDPVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDA 240
Cdd:TIGR00959 161 LGKGQ------------SPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDA 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 241 VSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILGMGDLLSLIEQAEQ 320
Cdd:TIGR00959 229 VNTAKTFNERLGLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQE 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 321 HFDAEQSLAAAEKITSGELTLEDFLEQMLAIRKMGPIGNLLGMLPGAGQMKDAL--AAVDDKQLDRVQAIIRGMTPAERA 398
Cdd:TIGR00959 309 VVDEEEAKKLAEKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLsdADLDEKQFKRIEAIISSMTPEERR 388
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 491211271 399 DPKIINASRRLRIANGSGVAVSEVNQLVDRFFEARKMMSS 438
Cdd:TIGR00959 389 NPKILNPSRRKRIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
5-454 |
1.91e-158 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 457.75 E-value: 1.91e-158
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 5 LSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNEELIG 84
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 85 ILGGETrQLAFAKTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYaphpG 164
Cdd:PRK00771 81 LLGEET-EPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY----G 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 165 TADGGlevgslvgDPVAVARDGLAHAKAQhfDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTA 244
Cdd:PRK00771 156 DPDNK--------DAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 245 EAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILGMGDLLSLIEQAEQHFDA 324
Cdd:PRK00771 226 KAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDE 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 325 EQSLAAAEKITSGELTLEDFLEQMLAIRKMGPIGNLLGMLPGAG-QMKDALAAVDDKQLDRVQAIIRGMTPAERADPKII 403
Cdd:PRK00771 306 EEEEKDVEKMMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGgKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEII 385
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 491211271 404 NASRRLRIANGSGVAVSEVNQLVDRFFEARKMMSSM-AGRMGMGAINRKSNR 454
Cdd:PRK00771 386 NASRIRRIARGSGTTVEDVRELLKYYKMMKKAMKQLkKGKGKMGKLMKQFGF 437
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
101-305 |
4.56e-104 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 309.91 E-value: 4.56e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 101 TVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTadgglevgslvgDPV 180
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQ------------SPV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTK 260
Cdd:cd18539 69 DIAKRALEKAKEEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTK 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 491211271 261 LDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRI 305
Cdd:cd18539 149 LDGDARGGAALSIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
100-307 |
1.86e-98 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 295.47 E-value: 1.86e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 100 PTVVMLAGLQGAGKTTLAGKLAKWLKGQG-HTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGtadgglevgslvGD 178
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEG------------AD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 179 PVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVL 258
Cdd:smart00962 69 PVAVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIIL 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 491211271 259 TKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILG 307
Cdd:smart00962 149 TKLDGTAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
101-305 |
8.20e-94 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 283.66 E-value: 8.20e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 101 TVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTadgglevgslvgDPV 180
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGA------------DPA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTK 260
Cdd:pfam00448 69 AVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTK 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 491211271 261 LDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRI 305
Cdd:pfam00448 149 LDGDAKGGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
5-439 |
6.73e-93 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 289.81 E-value: 6.73e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 5 LSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNEELIG 84
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 85 ILGGETRQLAFAKTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHpg 164
Cdd:TIGR01425 85 LVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSY-- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 165 tadgglevgsLVGDPVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTA 244
Cdd:TIGR01425 163 ----------EESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 245 EAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILGMGDLLSLIEQAEQHFDA 324
Cdd:TIGR01425 233 KAFKDSVEVGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALN 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 325 EQSLAAAEKITSGELTLEDFLEQMLAIRKMGPIGNLLGMLPGAGQ--MKDALAAVDDKQLDRVQAIIRGMTPAE-RADPK 401
Cdd:TIGR01425 313 DEEKTLIEHLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHpmMSKGNEEETSAKIKVFMTIMDSMTDRElDSTAK 392
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 491211271 402 II--NASRRLRIANGSGVAVSEVNQLvdrfFEARKMMSSM 439
Cdd:TIGR01425 393 TMlkDPSRIRRVARGSGRDIREVNEL----LEQYKLFAQM 428
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
1-307 |
5.48e-89 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 275.36 E-value: 5.48e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 1 MFESLSDRL-------TDALAGL-RGKGRLSDADIDAtcrtIRLALLEADVALPVVRTFITRIKERAKGAEVSgalnPAQ 72
Cdd:COG0552 1 FFERLKEGLsktrsglGEKLKSLfSGKKKIDEDLLEE----LEELLIEADVGVETTEEIIEELRERVKRKKLK----DPE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 73 QVVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGE 152
Cdd:COG0552 73 ELKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 153 RAGVSVYAPHPGtadgglevgslvGDPVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIR------DAVDPD 226
Cdd:COG0552 153 RVGVPVIAQKEG------------ADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKrvikklDPDAPH 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 227 EVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRIL 306
Cdd:COG0552 221 EVLLVLDATTGQNALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALF 300
|
.
gi 491211271 307 G 307
Cdd:COG0552 301 G 301
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
6-307 |
1.95e-75 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 240.77 E-value: 1.95e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 6 SDRLTDALAGLRGKGRLSDADIDAtcrtIRLALLEADVALPVVRTFITRIKERAKGAEVSGAlnpaQQVVKIVNEELIGI 85
Cdd:PRK10416 28 RENFGEGINGLFAKKKIDEDLLEE----LEELLIEADVGVETTEEIIEELRERVKRKNLKDP----EELKELLKEELAEI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 86 LGGETRQLAFAKTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGt 165
Cdd:PRK10416 100 LEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG- 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 166 adgglevgslvGDPVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVD------PDEVLFVLDAMIGQD 239
Cdd:PRK10416 179 -----------ADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKkadpdaPHEVLLVLDATTGQN 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491211271 240 AVSTAEAFREGVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILG 307
Cdd:PRK10416 248 ALSQAKAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
102-305 |
8.81e-75 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 234.57 E-value: 8.81e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTadgglevgslvgDPVA 181
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGT------------DPAS 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 182 VARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTKL 261
Cdd:cd03115 70 IAQEAVEKAKLEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKL 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 491211271 262 DGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRI 305
Cdd:cd03115 150 DGTAKGGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
21-307 |
2.14e-73 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 236.02 E-value: 2.14e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 21 RLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNEELIGILG-GETRQLAF---A 96
Cdd:PRK14974 57 EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSvGDLFDLIEeikS 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 97 KTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGtadgglevgslv 176
Cdd:PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYG------------ 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 177 GDPVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGV 256
Cdd:PRK14974 205 ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGV 284
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 491211271 257 VLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRILG 307
Cdd:PRK14974 285 ILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
34-306 |
3.85e-73 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 233.30 E-value: 3.85e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 34 IRLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTP-PTVVMLAGLQGAG 112
Cdd:TIGR00064 10 LEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELIVEENkPNVILFVGVNGVG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 113 KTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTadgglevgslvgDPVAVARDGLAHAKA 192
Cdd:TIGR00064 90 KTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGA------------DPAAVAFDAIQKAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 193 QHFDVVLVDTAGRLGIDAELMDQAARI------RDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDAR 266
Cdd:TIGR00064 158 RNIDVVLIDTAGRLQNKVNLMDELKKIkrvikkVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAK 237
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 491211271 267 GGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRIL 306
Cdd:TIGR00064 238 GGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-305 |
3.19e-66 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 212.44 E-value: 3.19e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYaphpgtadgglevGSLVG-DPV 180
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFY-------------GSYTEkDPV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTK 260
Cdd:cd17875 69 KIAKEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITK 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 491211271 261 LDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRI 305
Cdd:cd17875 149 LDGHAKGGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
101-305 |
1.19e-63 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 205.88 E-value: 1.19e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 101 TVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTadgglevgslvgDPV 180
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGA------------DPA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 AVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVD------PDEVLFVLDAMIGQDAVSTAEAFREGVGFT 254
Cdd:cd17874 69 AVAFDAIQAAKARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLT 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 491211271 255 GVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEDFDVFHPDRMASRI 305
Cdd:cd17874 149 GIILTKLDGTAKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
338-434 |
6.45e-41 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 142.15 E-value: 6.45e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 338 ELTLEDFLEQMLAIRKMGPIGNLLGMLPGAGQMKDALAAvdDKQLDRVQAIIRGMTPAERADPKIINASRRLRIANGSGV 417
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDS--EKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSGT 78
|
90
....*....|....*..
gi 491211271 418 AVSEVNQLVDRFFEARK 434
Cdd:pfam02978 79 SVQEVNRLLKQFKQMKK 95
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
102-299 |
1.30e-39 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 142.75 E-value: 1.30e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGTadgglevgslvgDPVA 181
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGK------------DPAA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 182 VARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGV---------- 251
Cdd:cd17876 70 VAKEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnpr 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 491211271 252 GFTGVVLTKLDG-DARGGAALSVREITGTPILFASTGEKLEDFDVFHPD 299
Cdd:cd17876 150 LIDGIVLTKFDTiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVK 198
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
34-307 |
1.12e-30 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 122.67 E-value: 1.12e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 34 IRLALLEADVALPVVRTFITRIKERAkgaevsgalnPAQQVVKIVNEELIGILGGETRQLAfakTPPTVVMLAGLQGAGK 113
Cdd:COG1419 111 LLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEALARRLPVAEDPLL---DEGGVIALVGPTGVGK 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 114 TTLAGKLAKWLK-GQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAphpgtadgglevgslVGDPVAVARdglAHAKA 192
Cdd:COG1419 178 TTTIAKLAARFVlRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEV---------------AYDPEELKE---ALERL 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 193 QHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDA-MIGQDAVSTAEAFReGVGFTGVVLTKLDGDARGGAAL 271
Cdd:COG1419 240 RDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFS-SLGLDGLILTKLDETASLGSIL 318
|
250 260 270
....*....|....*....|....*....|....*..
gi 491211271 272 SVREITGTPILFASTGEKL-EDFDVFHPDRMASRILG 307
Cdd:COG1419 319 NLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
102-305 |
5.85e-26 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 104.55 E-value: 5.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGHTPL-LVACDLQRPGAVNQLQVVGERAGVsvyaphpgtadgglevgslvgdPV 180
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVaLITTDTYRIGAVEQLKTYAEIMGI----------------------PV 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 AVARDGLAHAKA----QHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDA-MIGQDAVSTAEAFReGVGFTG 255
Cdd:cd17873 60 EVAEDPEDLADAlerlSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSAtTKAKDLKEIIERFS-PLGYRG 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 491211271 256 VVLTKLDGDARGGAALSVREITGTPILFASTGEKL-EDFDVFHPDRMASRI 305
Cdd:cd17873 139 LILTKLDETTSLGSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
5-82 |
2.80e-22 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 90.60 E-value: 2.80e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491211271 5 LSDRLTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGAEvsgALNPAQQVVKIVNEEL 82
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEK---KLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
9-86 |
2.05e-20 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 85.30 E-value: 2.05e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491211271 9 LTDALAGLRGKGRLSDADIDATCRTIRLALLEADVALPVVRTFITRIKERAKGaEVSGALNPAQQVVKIVNEELIGIL 86
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
77-291 |
2.48e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 75.10 E-value: 2.48e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 77 IVNEELIGILGGETR-----QLAFAKTPPTVVMLaGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVG 151
Cdd:PRK11889 214 ITEEEVIEYILEDMRshfntENVFEKEVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 152 ERAGVSVYAphpgtadgglevgslVGDPVAVARdGLAHAKAQ-HFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLF 230
Cdd:PRK11889 293 KTIGFEVIA---------------VRDEAAMTR-ALTYFKEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICL 356
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491211271 231 VLDA-MIGQDAVSTAEAFREgVGFTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLE 291
Cdd:PRK11889 357 TLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 417
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
55-307 |
3.10e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 74.55 E-value: 3.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 55 IKERAKGAEVSGALnpAQQVVKIVNEELIGILGGETRQL--AFAKTPPT----------VVMLAGLQGAGKTT----LAG 118
Cdd:PRK05703 166 LYKRLKRSGLSPEI--AEKLLKLLLEHMPPRERTAWRYLleLLANMIPVrvedilkqggVVALVGPTGVGKTTtlakLAA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 119 KLAKwLKGQGHTPlLVACDLQRPGAVNQLqvvgeragvSVYAphpgtadgglevgSLVGDPVAVARDG--LAHAKAQ--H 194
Cdd:PRK05703 244 RYAL-LYGKKKVA-LITLDTYRIGAVEQL---------KTYA-------------KIMGIPVEVVYDPkeLAKALEQlrD 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 195 FDVVLVDTAGRLGIDAELMDQ-AARIRDAVDPDEVLFVLdAMIGQ--DAVSTAEAFREgVGFTGVVLTKLDGDARGGAAL 271
Cdd:PRK05703 300 CDVILIDTAGRSQRDKRLIEElKALIEFSGEPIDVYLVL-SATTKyeDLKDIYKHFSR-LPLDGLIFTKLDETSSLGSIL 377
|
250 260 270
....*....|....*....|....*....|....*..
gi 491211271 272 SVREITGTPILFASTGEKL-EDFDVFHPDRMASRILG 307
Cdd:PRK05703 378 SLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
32-291 |
1.27e-13 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 71.32 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 32 RTIRLaLLEADVALPVVRTFITRIKERAKGAEVSgalnpAQQVVKIVNEELIGILGGETrqlAFAKTPPTVVMLaGLQGA 111
Cdd:PRK06731 17 KVIRM-LEQNDVEQYFIHAYAEKLKVKFENATMI-----TEEVIEYILEDMSSHFNTEN---VFEKEVQTIALI-GPTGV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 112 GKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAphpgtadgglevgslVGDPVAVARDGLAHAK 191
Cdd:PRK06731 87 GKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIA---------------VRDEAAMTRALTYFKE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 192 AQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDA-MIGQDAVSTAEAFREgVGFTGVVLTKLDGDARGGAA 270
Cdd:PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGEL 230
|
250 260
....*....|....*....|.
gi 491211271 271 LSVREITGTPILFASTGEKLE 291
Cdd:PRK06731 231 LKIPAVSSAPIVLMTDGQDVK 251
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
102-307 |
8.05e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 63.99 E-value: 8.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVS-VYAPHPGTADGGLEVGSLVgdpv 180
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVElIVATSPAELEEAVQYMTYV---- 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 avardglahakaQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDA-MIGQDAVSTAEAFREgVGFTGVVLT 259
Cdd:PRK12726 284 ------------NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIIT 350
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 491211271 260 KLDGDARGGAALSVREITGTPILFASTGEKLEDfDVFHPDR--MASRILG 307
Cdd:PRK12726 351 KMDETTRIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPKSrwLAERFVG 399
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
102-292 |
8.02e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 60.51 E-value: 8.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKW--LKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAPHPGtadGGLEVGslvgdp 179
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG---GDLQLA------ 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 180 vavardgLAHAKAQHfdVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVS-TAEAFREGVG------ 252
Cdd:PRK14722 210 -------LAELRNKH--MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSAAGqpkaal 280
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 491211271 253 --FTGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLED 292
Cdd:PRK14722 281 pdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
85-311 |
8.70e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 61.16 E-value: 8.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 85 ILGGETRQLAFAKTPPT----VVMLAGLQGAGKTTLAGKLAKWLKGQgHTP---LLVACDLQRPGAVNQLQVVGERAGVS 157
Cdd:PRK12727 331 MLGLLSKRLPVAPVDPLerggVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPrdvALVTTDTQRVGGREQLHSYGRQLGIA 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 158 VYAphpgtADGGLEVGSLVgdpvavardglahAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDA-------VDPDEVLF 230
Cdd:PRK12727 410 VHE-----ADSAESLLDLL-------------ERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAArqvtsllVLPANAHF 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 231 V-LDAMIGQDAVSTAEafregvgftGVVLTKLDGDARGGAALSVREITGTPILFASTGEKLEdfDVFHPDRMASRILGMG 309
Cdd:PRK12727 472 SdLDEVVRRFAHAKPQ---------GVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVP--DDLHRANAASLVLRLE 540
|
..
gi 491211271 310 DL 311
Cdd:PRK12727 541 DL 542
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
102-289 |
1.12e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 60.97 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKL-AKWLKGQGHTPL-LVACDLQRPGAVNQLQVVGERAGVSVYAphpgtadgglevgslVGDp 179
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLaARCVAREGADQLaLLTTDSFRIGALEQLRIYGRILGVPVHA---------------VKD- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 180 VAVARDGLAHAKAQHfdVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVS-TAEAFREGVG--FTGV 256
Cdd:PRK14723 251 AADLRFALAALGDKH--LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYRHGAGedVDGC 328
|
170 180 190
....*....|....*....|....*....|...
gi 491211271 257 VLTKLDGDARGGAALSVREITGTPILFASTGEK 289
Cdd:PRK14723 329 IITKLDEATHLGPALDTVIRHRLPVHYVSTGQK 361
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
99-237 |
6.19e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 54.69 E-value: 6.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 99 PPTVVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVsvyaphpgtadgglevgsLVGD 178
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKK------------------ASGS 62
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 491211271 179 PVAVARDGLAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIG 237
Cdd:smart00382 63 GELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
3-204 |
6.53e-09 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 56.96 E-value: 6.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 3 ESLSDRLTDALAGLRGKGRLSDadidatcrtIRLALLEADVALPVVRTFITRIKERAkgaevsgalnPAQQVVKIVNEEL 82
Cdd:TIGR03499 117 RELLERLLAGLAWLQRPPERAK---------LYERLLEAGVSEELARELLEKLPEDA----------DAEDAWRWLREAL 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 83 IGILGGETRQlAFAKTPPTVVMLAGLQGAGKTTLAGKLAKW--LKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYA 160
Cdd:TIGR03499 178 EGMLPVKPEE-DPILEQGGVIALVGPTGVGKTTTLAKLAARfaLEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKV 256
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 491211271 161 phpgtadgglevgslVGDPVAVARdglAHAKAQHFDVVLVDTAG 204
Cdd:TIGR03499 257 ---------------ARDPKELRE---ALDRLRDKDLILIDTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
102-300 |
2.79e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 56.13 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKL-AKWLKGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAphpgtadggleVGSLVGDPV 180
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLaAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP-----------VKDIKKFKE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 AVARDGlahakaqhFDVVLVDTAG---RLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVV 257
Cdd:PRK12724 294 TLARDG--------SELILIDTAGyshRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 491211271 258 LTKLDGDARGGAALSVREITGTPILFASTGEKLEdFDVFHPDR 300
Cdd:PRK12724 366 LTKLDEADFLGSFLELADTYSKSFTYLSVGQEVP-FDILNATK 407
|
|
| PHA02518 |
PHA02518 |
ParA-like protein; Provisional |
110-289 |
5.33e-07 |
|
ParA-like protein; Provisional
Pssm-ID: 222854 [Multi-domain] Cd Length: 211 Bit Score: 50.62 E-value: 5.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 110 GAGKTTLAGKLAKWLKGQGHTPLLVACDLQRpgavNQLQVVGERAgvsvyaphpgtadGGLEVGSLVGDPVAVARDglAH 189
Cdd:PHA02518 11 GAGKTTVATNLASWLHADGHKVLLVDLDPQG----SSTDWAEARE-------------EGEPLIPVVRMGKSIRAD--LP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 190 AKAQHFDVVLVDTAGRlgiDAELMDQAARIRDAV----DPDEV-LFVLDAMIgqDAVSTAEAFREGV-GFTGVVLTKLDG 263
Cdd:PHA02518 72 KVASGYDYVVVDGAPQ---DSELARAALRIADMVlipvQPSPFdIWAAPDLV--ELIKARQEVTDGLpKFAFIISRAIKN 146
|
170 180
....*....|....*....|....*.
gi 491211271 264 DARGGAALSVREITGTPILFASTGEK 289
Cdd:PHA02518 147 TQLYREARKALAGYGLPILRNGTTQR 172
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
102-273 |
1.63e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 47.25 E-value: 1.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLA-KWLKGQGHTPL-LVACDLQRPGAVNQLQVVGERAGVSVYAphpgtadgglevgslVGDp 179
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAaRAVIRHGADKVaLLTTDSYRIGGHEQLRIYGKLLGVSVRS---------------IKD- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 180 VAVARDGLAHAKAQHfdVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLT 259
Cdd:PRK14721 257 IADLQLMLHELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIIT 334
|
170
....*....|....
gi 491211271 260 KLDGDARGGAALSV 273
Cdd:PRK14721 335 KVDEAASLGIALDA 348
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
50-272 |
1.70e-04 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 44.12 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 50 TFITRIKERAKGAEVSGALNPAQQV---VKIVNEELIGILGGETRQLAfaktpPTVVMLAGLQGAGKTTLAGKLAKWL-- 124
Cdd:PRK12723 126 SYIKDINEFIKKEFSLSDLDDYDKVrdsVIIYIAKTIKCSGSIIDNLK-----KRVFILVGPTGVGKTTTIAKLAAIYgi 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 125 --KGQGHTPLLVACDLQRPGAVNQLQVVGERAGVSVYAphpgtadggLEVGSLVGDPVAVARDglahakaqhFDVVLVDT 202
Cdd:PRK12723 201 nsDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA---------IESFKDLKEEITQSKD---------FDLVLVDT 262
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491211271 203 AGRLGIDAELMDQAARIRDAVDPD-EVLFVLDAMIGQDAVSTAEAFREGVGFTGVVLTKLDGDARGGAALS 272
Cdd:PRK12723 263 IGKSPKDFMKLAEMKELLNACGRDaEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLIS 333
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
102-260 |
1.72e-04 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 40.88 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQ-GAGKTTLAGKLAKWLKGQGHTPLLVACDlqrpgavnqlqvvgeragvsvyaphpgtadgglevgslvgdpv 180
Cdd:cd01983 2 VIAVTGGKgGVGKTTLAAALAVALAAKGYKVLLIDLD------------------------------------------- 38
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 181 avardglahakaqhfDVVLVDTAGRLGIDAELMDQAARIRDAVdPDEVLFVLDAMIG--QDAVSTA---EAFREGVGFTG 255
Cdd:cd01983 39 ---------------DYVLIDGGGGLETGLLLGTIVALLALKK-ADEVIVVVDPELGslLEAVKLLlalLLLGIGIRPDG 102
|
....*
gi 491211271 256 VVLTK 260
Cdd:cd01983 103 IVLNK 107
|
|
| UMPK_like |
cd02028 |
Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the ... |
102-137 |
3.73e-04 |
|
Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Pssm-ID: 238986 [Multi-domain] Cd Length: 179 Bit Score: 41.52 E-value: 3.73e-04
10 20 30
....*....|....*....|....*....|....*.
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGHTPLLVACD 137
Cdd:cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
35-267 |
3.90e-04 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 42.48 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 35 RLALLEADVALPVVRTFITRIKERAKGAEVSGALNPAQQVVKIVNEELIGILGGETRQLAFAKTPPTVVMLAGLQGAGKT 114
Cdd:COG0489 28 LLRLEEAAAAAALAAAAPAAAAPAPLPPAPALLLLLLLLLGLLLLLLLALALLLLLLLLLLRLLLEVIAVTSGKGGEGKS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 115 TLAGKLAKWLKGQGHTPLLVACDLQRPGAVNQLQVVGeRAGVSVY---------APHPgTADGGLEV---GSLVGDPVAV 182
Cdd:COG0489 108 TVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLEN-RPGLSDVlageasledVIQP-TEVEGLDVlpaGPLPPNPSEL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 183 A-----RDGLAHAKaQHFDVVLVDTA-GRLGIDAELMDQAArirdavdpDEVLFVLDA--MIGQDAVSTAEAFRE-GVGF 253
Cdd:COG0489 186 LaskrlKQLLEELR-GRYDYVIIDTPpGLGVADATLLASLV--------DGVLLVVRPgkTALDDVRKALEMLEKaGVPV 256
|
250
....*....|....
gi 491211271 254 TGVVLTKLDGDARG 267
Cdd:COG0489 257 LGVVLNMVCPKGER 270
|
|
| CysC |
COG0529 |
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; ... |
97-133 |
1.13e-03 |
|
Adenylylsulfate kinase or related kinase [Inorganic ion transport and metabolism]; Adenylylsulfate kinase or related kinase is part of the Pathway/BioSystem: Cysteine biosynthesis
Pssm-ID: 440295 [Multi-domain] Cd Length: 189 Bit Score: 40.07 E-value: 1.13e-03
10 20 30
....*....|....*....|....*....|....*...
gi 491211271 97 KTPPTVVMLAGLQGAGKTTLAGKLAKWLKGQG-HTPLL 133
Cdd:COG0529 13 GQKGFVVWFTGLSGSGKSTLANALERRLFERGrHVYLL 50
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
102-292 |
6.14e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 39.18 E-value: 6.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWL---KGQGHTPLLVAcDLQRPGAVNQLQVVGERAGVSVYAphpgtadgglevgslvgd 178
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAARCvmrHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVHA------------------ 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491211271 179 pvavARDG----LAHAKAQHFDVVLVDTAGRLGIDAELMDQAARIRDAVDPDEVLFVLDAMIGQDAVS-TAEAFReGVGF 253
Cdd:PRK06995 319 ----VKDAadlrLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNeVVQAYR-GPGL 393
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 491211271 254 TGVVLTKLDGDARGGAALSV--REitGTPILFASTGEKL-ED 292
Cdd:PRK06995 394 AGCILTKLDEAASLGGALDVviRY--KLPLHYVSNGQRVpED 433
|
|
| PRK00889 |
PRK00889 |
adenylylsulfate kinase; Provisional |
102-129 |
7.72e-03 |
|
adenylylsulfate kinase; Provisional
Pssm-ID: 179157 Cd Length: 175 Bit Score: 37.69 E-value: 7.72e-03
10 20
....*....|....*....|....*...
gi 491211271 102 VVMLAGLQGAGKTTLAGKLAKWLKGQGH 129
Cdd:PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGY 33
|
|
| |
