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Conserved domains on  [gi|491444379|ref|WP_005302167|]
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MULTISPECIES: Sec-independent protein translocase protein TatB [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK04654 super family cl31366
sec-independent translocase; Provisional
 1-117 9.97e-19

sec-independent translocase; Provisional


The actual alignment was detected with superfamily member PRK04654:

Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 78.70  E-value: 9.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEelnrIEALERKVQQQ 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQD----VQASLREAEDQ 76

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 491444379  81 LEEIQKQTTSD-NSEKTEVAETISQSTMYSPVSGHYEV 117
Cdd:PRK04654  77 LRNTQQQVEQGaRALHDDVSRDIDIRTSATPVATPLEL 114
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-117 9.97e-19

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 78.70  E-value: 9.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEelnrIEALERKVQQQ 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQD----VQASLREAEDQ 76

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 491444379  81 LEEIQKQTTSD-NSEKTEVAETISQSTMYSPVSGHYEV 117
Cdd:PRK04654  77 LRNTQQQVEQGaRALHDDVSRDIDIRTSATPVATPLEL 114
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-79 1.50e-18

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 74.66  E-value: 1.50e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491444379    2 LDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEELN-RIEALERKVQQ 79
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQaRFLNLTAELKD 79
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-66 7.08e-18

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 72.66  E-value: 7.08e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEE 66
Cdd:COG1826    1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFKKAANEVKEELDEELKEEELRKSEKEA 66
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-53 1.43e-07

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 45.37  E-value: 1.43e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 491444379    4 VGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQE 53
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALGKTLREFKKATKELEEEDEKE 50
 
Name Accession Description Interval E-value
PRK04654 PRK04654
sec-independent translocase; Provisional
 1-117 9.97e-19

sec-independent translocase; Provisional


Pssm-ID: 135173 [Multi-domain]  Cd Length: 214  Bit Score: 78.70  E-value: 9.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEelnrIEALERKVQQQ 80
Cdd:PRK04654   1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQD----VQASLREAEDQ 76

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 491444379  81 LEEIQKQTTSD-NSEKTEVAETISQSTMYSPVSGHYEV 117
Cdd:PRK04654  77 LRNTQQQVEQGaRALHDDVSRDIDIRTSATPVATPLEL 114
tatB TIGR01410
twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a ...
 2-79 1.50e-18

twin arginine-targeting protein translocase TatB; This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 130477 [Multi-domain]  Cd Length: 80  Bit Score: 74.66  E-value: 1.50e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491444379    2 LDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEELN-RIEALERKVQQ 79
Cdd:TIGR01410   1 FDIGFSELLLIAVVALVVLGPERLPVAIRTVGGFVRALRGMASDVKNELDEELKLQELDDQLKKAQQaRFLNLTAELKD 79
TatA COG1826
Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, ...
 1-66 7.08e-18

Twin-arginine protein secretion pathway components TatA and TatB [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441431 [Multi-domain]  Cd Length: 72  Bit Score: 72.66  E-value: 7.08e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELRLSEFRKEMQEE 66
Cdd:COG1826    1 MFGIGFWELLIILVVALLVFGPKKLPELARSLGKAIREFKKAANEVKEELDEELKEEELRKSEKEA 66
PRK01371 PRK01371
Sec-independent protein translocase protein TatB;
1-54 1.29e-12

Sec-independent protein translocase protein TatB;


Pssm-ID: 179287 [Multi-domain]  Cd Length: 137  Bit Score: 60.88  E-value: 1.29e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQEL 54
Cdd:PRK01371   1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNARNDLRSEL 54
tatA PRK14858
twin arginine translocase protein A; Provisional
 1-100 7.75e-09

twin arginine translocase protein A; Provisional


Pssm-ID: 184860  Cd Length: 108  Bit Score: 50.25  E-value: 7.75e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRyitnlqneidqelRLSEFRKEMQEElNRIEALERKVQQQ 80
Cdd:PRK14858   1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKK-------------ATDDFKQSMQEE-SRTAEEKEKAEKL 66

                         90       100
                 ....*....|....*....|
gi 491444379  81 LEEIQKQTTSDNSEKTEVAE 100
Cdd:PRK14858  67 AETKKEAEAPEAKAEEDQAP 86
TatA_B_E pfam02416
mttA/Hcf106 family; Members of this protein family are involved in a sec independent ...
 4-53 1.43e-07

mttA/Hcf106 family; Members of this protein family are involved in a sec independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts. Members of this family in E.coli are involved in export of redox proteins with a "twin arginine" leader motif.


Pssm-ID: 426762  Cd Length: 53  Bit Score: 45.37  E-value: 1.43e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 491444379    4 VGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQE 53
Cdd:pfam02416   1 LGIPELLIILVVALLLFGPKKLPELGRALGKTLREFKKATKELEEEDEKE 50
tatA PRK14861
twin arginine translocase protein A; Provisional
 1-55 2.36e-05

twin arginine translocase protein A; Provisional


Pssm-ID: 237837  Cd Length: 61  Bit Score: 39.95  E-value: 2.36e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEIDQELR 55
Cdd:PRK14861   2 FSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTDDDFQEKK 56
tatB PRK00182
Sec-independent protein translocase subunit TatB;
4-75 6.25e-04

Sec-independent protein translocase subunit TatB;


Pssm-ID: 234681  Cd Length: 160  Bit Score: 37.88  E-value: 6.25e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491444379   4 VGMTELLCFAIIAILVLGPDKLP------EAARFAGRwyvrlkRYITNLQNEIDQELRlSEFRkEMQEELNRIEALER 75
Cdd:PRK00182   5 VGWGEILLLLIVGLIVIGPERLPrliedvRAALLAAR------TAINNAKQQLDGDFG-EEFD-EFRKPLNQIASYRR 74
tatA PRK14860
twin arginine translocase protein A; Provisional
 1-66 1.09e-03

twin arginine translocase protein A; Provisional


Pssm-ID: 184862  Cd Length: 64  Bit Score: 35.48  E-value: 1.09e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491444379   1 MLDVGMTELLCFAIIAILVLGPDKLPEAARFAGRwyvrlkryitnlqneidqelRLSEFRKEMQEE 66
Cdd:PRK14860   1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGG--------------------AIRNFKKASNEE 46
tatA PRK00191
twin arginine translocase protein A; Provisional
 2-85 2.42e-03

twin arginine translocase protein A; Provisional


Pssm-ID: 234683 [Multi-domain]  Cd Length: 84  Bit Score: 34.93  E-value: 2.42e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444379   2 LDVGMTELLCFAIIAILVLGPDKLPEAARFAGRWYVRLKRYITNLQNEiDQELRLSEFRKEMQEELNRIEALERKVQQQL 81
Cdd:PRK00191   1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSKD-DQTPEQQQQQPQQQIAPNQIEAPQPNFQQHY 79


                 ....
gi 491444379  82 EEIQ 85
Cdd:PRK00191  80 QGQQ 83
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
41-101 7.09e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 35.42  E-value: 7.09e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491444379  41 RYITNLQNEIDQELRLSEFRKEMQEELNRIEALERKVQQQLEEIQKQTTSDNSEKTEVAET 101
Cdd:PRK03918 283 KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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