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Conserved domains on  [gi|491444625|ref|WP_005302413|]
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MULTISPECIES: ribosome biogenesis factor YjgA [Acinetobacter]

Protein Classification

DUF615 domain-containing protein( domain architecture ID 10012284)

DUF615 domain-containing protein similar to Escherichia coli YjgA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK05255 PRK05255
ribosome-associated protein;
5-173 9.75e-53

ribosome-associated protein;


:

Pssm-ID: 235377  Cd Length: 171  Bit Score: 165.79  E-value: 9.75e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   5 SQRYTEEDFGSLEGRaSKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLR 84
Cdd:PRK05255   3 PMRDPEEEDDEIIWV-SKSQIKRDAEALQDLGEELVELSKDQLAKLPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625  85 NEDETVILSYLTPQQGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQASeadiEA 159
Cdd:PRK05255  82 NEDVEPIRAALDKLKNKHNQEtarfhKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKKEKAQNKP----PK 157
                        170
                 ....*....|....
gi 491444625 160 SKVKFVNYVQQIAL 173
Cdd:PRK05255 158 SFRELFQYLRELIE 171
 
Name Accession Description Interval E-value
PRK05255 PRK05255
ribosome-associated protein;
5-173 9.75e-53

ribosome-associated protein;


Pssm-ID: 235377  Cd Length: 171  Bit Score: 165.79  E-value: 9.75e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   5 SQRYTEEDFGSLEGRaSKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLR 84
Cdd:PRK05255   3 PMRDPEEEDDEIIWV-SKSQIKRDAEALQDLGEELVELSKDQLAKLPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625  85 NEDETVILSYLTPQQGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQASeadiEA 159
Cdd:PRK05255  82 NEDVEPIRAALDKLKNKHNQEtarfhKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKKEKAQNKP----PK 157
                        170
                 ....*....|....
gi 491444625 160 SKVKFVNYVQQIAL 173
Cdd:PRK05255 158 SFRELFQYLRELIE 171
YjgA-like cd16331
uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized ...
19-152 1.77e-37

uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized proteins similar to Escherichia coli YjgA, which has been identified as comigrating with the 50S ribosome


Pssm-ID: 319991  Cd Length: 153  Bit Score: 126.42  E-value: 1.77e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625  19 RASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLRNEDETVILSYLTPQ 98
Cdd:cd16331    1 RPSKSQLKREAHALQDLGEELVELSPAQLAKLPLPEELREAILEAKRIKSHEARRRQLQYIGKLMRDEDPEAIRAALDAL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 491444625  99 QGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQA 152
Cdd:cd16331   81 KNGSRAEnarfhRLERWRDRLIAEGDAALTELLAEYPDADRQQLRQLIRNARKEREANK 139
DUF615 pfam04751
Protein of unknown function (DUF615); This family of bacterial proteins has no known function.
19-151 8.47e-36

Protein of unknown function (DUF615); This family of bacterial proteins has no known function.


Pssm-ID: 461418  Cd Length: 139  Bit Score: 121.47  E-value: 8.47e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   19 RASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLRNEDETVILSYLTPQ 98
Cdd:pfam04751   2 RPSKSQLKREALALQDLGEELVALSPDQLARLPLPEELRDAILEAKRITSHEARRRQLQYIGKLMREVDPEPIRAALDAL 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 491444625   99 QGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQ 151
Cdd:pfam04751  82 KNKSRQEtaafhRLERWRDRLLADDDAALTELLEEYPDADRQQLRQLIRNARKEREAN 139
YjgA COG3028
Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure ...
6-151 2.83e-31

Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442264  Cd Length: 174  Bit Score: 111.03  E-value: 2.83e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   6 QRYTEEDFGSLEGRASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLRN 85
Cdd:COG3028    2 SRKPLDDEDEEDERPSKSQLKREMHALQDLGEELVELSPDQLAKLPLPEDLRDAIAEARRITKHEARRRQLQYIGKLMRR 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491444625  86 EDETVILSYLTPQQGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQ 151
Cdd:COG3028   82 EDLEPIRAALDKLKNGSAQEtaafhRLERWRDRLIAEGDDALTELLEEYPQADRQQLRQLIRNARKEAAAN 152
 
Name Accession Description Interval E-value
PRK05255 PRK05255
ribosome-associated protein;
5-173 9.75e-53

ribosome-associated protein;


Pssm-ID: 235377  Cd Length: 171  Bit Score: 165.79  E-value: 9.75e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   5 SQRYTEEDFGSLEGRaSKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLR 84
Cdd:PRK05255   3 PMRDPEEEDDEIIWV-SKSQIKRDAEALQDLGEELVELSKDQLAKLPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625  85 NEDETVILSYLTPQQGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQASeadiEA 159
Cdd:PRK05255  82 NEDVEPIRAALDKLKNKHNQEtarfhKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKKEKAQNKP----PK 157
                        170
                 ....*....|....
gi 491444625 160 SKVKFVNYVQQIAL 173
Cdd:PRK05255 158 SFRELFQYLRELIE 171
YjgA-like cd16331
uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized ...
19-152 1.77e-37

uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized proteins similar to Escherichia coli YjgA, which has been identified as comigrating with the 50S ribosome


Pssm-ID: 319991  Cd Length: 153  Bit Score: 126.42  E-value: 1.77e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625  19 RASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLRNEDETVILSYLTPQ 98
Cdd:cd16331    1 RPSKSQLKREAHALQDLGEELVELSPAQLAKLPLPEELREAILEAKRIKSHEARRRQLQYIGKLMRDEDPEAIRAALDAL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 491444625  99 QGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQA 152
Cdd:cd16331   81 KNGSRAEnarfhRLERWRDRLIAEGDAALTELLAEYPDADRQQLRQLIRNARKEREANK 139
DUF615 pfam04751
Protein of unknown function (DUF615); This family of bacterial proteins has no known function.
19-151 8.47e-36

Protein of unknown function (DUF615); This family of bacterial proteins has no known function.


Pssm-ID: 461418  Cd Length: 139  Bit Score: 121.47  E-value: 8.47e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   19 RASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLRNEDETVILSYLTPQ 98
Cdd:pfam04751   2 RPSKSQLKREALALQDLGEELVALSPDQLARLPLPEELRDAILEAKRITSHEARRRQLQYIGKLMREVDPEPIRAALDAL 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 491444625   99 QGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQ 151
Cdd:pfam04751  82 KNKSRQEtaafhRLERWRDRLLADDDAALTELLEEYPDADRQQLRQLIRNARKEREAN 139
YjgA COG3028
Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure ...
6-151 2.83e-31

Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442264  Cd Length: 174  Bit Score: 111.03  E-value: 2.83e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491444625   6 QRYTEEDFGSLEGRASKTEQKKAVQRMAALGEQLAQLSIKQIQKLPVDERLIDALMEVQNISSFEARRRQFQRIGKLLRN 85
Cdd:COG3028    2 SRKPLDDEDEEDERPSKSQLKREMHALQDLGEELVELSPDQLAKLPLPEDLRDAIAEARRITKHEARRRQLQYIGKLMRR 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491444625  86 EDETVILSYLTPQQGAKRQA-----QLMRWVDRMIEQGDPAINEFSKIYNASERHTLRQHVLRINRDKTQQ 151
Cdd:COG3028   82 EDLEPIRAALDKLKNGSAQEtaafhRLERWRDRLIAEGDDALTELLEEYPQADRQQLRQLIRNARKEAAAN 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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