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Conserved domains on  [gi|491445758|ref|WP_005303545|]
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MULTISPECIES: NADH:ubiquinone reductase (Na(+)-transporting) subunit D [Aeromonas]

Protein Classification

Na(+)-translocating NADH-quinone reductase subunit D( domain architecture ID 10003575)

Na(+)-translocating NADH-quinone reductase subunit D is part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NqrD COG1347
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and ...
 1-208 2.90e-143

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


:

Pssm-ID: 440958  Cd Length: 208  Bit Score: 397.64  E-value: 2.90e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   1 MADKSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIA 80
Cdd:COG1347    1 MAFSKKNKKVLTDPLFDNNPITLQILGICSALAVTTKLKTALVMSIAVTLVTAFSNLFISLIRNHIPSSIRIIVQMTIIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTW 160
Cdd:COG1347   81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAFAMKNPPWPSFLDGIGNGLGYGLILLIVAFFRELFGSGTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 491445758 161 FGIELLPLVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVEA 208
Cdd:COG1347  161 FGFQVLPLVNYGGWYQPNGLMLLPPSAFFIIGLIIWALRSWKPEQVEK 208
 
Name Accession Description Interval E-value
NqrD COG1347
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and ...
 1-208 2.90e-143

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 440958  Cd Length: 208  Bit Score: 397.64  E-value: 2.90e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   1 MADKSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIA 80
Cdd:COG1347    1 MAFSKKNKKVLTDPLFDNNPITLQILGICSALAVTTKLKTALVMSIAVTLVTAFSNLFISLIRNHIPSSIRIIVQMTIIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTW 160
Cdd:COG1347   81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAFAMKNPPWPSFLDGIGNGLGYGLILLIVAFFRELFGSGTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 491445758 161 FGIELLPLVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVEA 208
Cdd:COG1347  161 FGFQVLPLVNYGGWYQPNGLMLLPPSAFFIIGLIIWALRSWKPEQVEK 208
PRK09292 PRK09292
Na(+)-translocating NADH-quinone reductase subunit D; Validated
 1-209 1.73e-140

Na(+)-translocating NADH-quinone reductase subunit D; Validated


Pssm-ID: 236457  Cd Length: 209  Bit Score: 390.79  E-value: 1.73e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   1 MADKSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIA 80
Cdd:PRK09292   1 MADSKSLKKVLLGPLFDNNPIALQVLGICSALAVTTKLETALVMTLAVTFVTAFSNFFISLIRNHIPNSVRIIVQMTIIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTW 160
Cdd:PRK09292  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAFAMKNPPIPSFLDGIGNGLGYGAILLIVAFFRELFGSGTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 491445758 161 FGIELLPLVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVEAK 209
Cdd:PRK09292 161 FGFTVLPTVQNGGWYQPNGLMLLPPSAFFLIGLLIWVIRTWKPEQVEKK 209
nqrD TIGR01939
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD ...
 4-207 2.80e-109

NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 130994  Cd Length: 207  Bit Score: 311.67  E-value: 2.80e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758    4 KSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLV 83
Cdd:TIGR01939   3 NKSYKEYLLDPLWSNNPILLQILGICSALAVTTKLQTAIVMAIAVTFVTGFSNFFVSLLRNTIPNSIRMIVQLVIIASLV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   84 IVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWFGI 163
Cdd:TIGR01939  83 IVVDQVLKAFAYDISKQLSVFVGLIITNCIVMGRAEAFAMANPPIPSFLDGIGNGLGYGWVLVIIGFFRELFGSGTLLGI 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 491445758  164 ELLP-LVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVE 207
Cdd:TIGR01939 163 RVIPkLYYSGGWYQNNGLMLLAPSAFFLIGIVIWVVRIRKKDQQE 207
Rnf-Nqr pfam02508
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
 7-194 1.26e-73

Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.


Pssm-ID: 460575  Cd Length: 181  Bit Score: 220.37  E-value: 1.26e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758    7 MKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLVIVV 86
Cdd:pfam02508   1 LLKIFISGIFVNNPVLVQFLGLCPFLAVTKKLENALGMGLAVTFVLTLSNVVISLLRNFIPDYLRIIVFILVIAALVQLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   87 DQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWFGIELL 166
Cdd:pfam02508  81 EMVLKAYSPALYKALGIFLPLIVTNCIILGRAEAFASKNPFLESLVDGLGMGLGFTLALVLLAGIRELLGRGTPIGGQIL 160

                         170       180
                  ....*....|....*....|....*...
gi 491445758  167 plvnnggWYVPNGLLLLPPSAFFIIGLI 194
Cdd:pfam02508 161 -------GYQPLILAGLPPGAFMGFGGL 181
 
Name Accession Description Interval E-value
NqrD COG1347
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and ...
 1-208 2.90e-143

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 440958  Cd Length: 208  Bit Score: 397.64  E-value: 2.90e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   1 MADKSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIA 80
Cdd:COG1347    1 MAFSKKNKKVLTDPLFDNNPITLQILGICSALAVTTKLKTALVMSIAVTLVTAFSNLFISLIRNHIPSSIRIIVQMTIIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTW 160
Cdd:COG1347   81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAFAMKNPPWPSFLDGIGNGLGYGLILLIVAFFRELFGSGTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 491445758 161 FGIELLPLVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVEA 208
Cdd:COG1347  161 FGFQVLPLVNYGGWYQPNGLMLLPPSAFFIIGLIIWALRSWKPEQVEK 208
PRK09292 PRK09292
Na(+)-translocating NADH-quinone reductase subunit D; Validated
 1-209 1.73e-140

Na(+)-translocating NADH-quinone reductase subunit D; Validated


Pssm-ID: 236457  Cd Length: 209  Bit Score: 390.79  E-value: 1.73e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   1 MADKSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIA 80
Cdd:PRK09292   1 MADSKSLKKVLLGPLFDNNPIALQVLGICSALAVTTKLETALVMTLAVTFVTAFSNFFISLIRNHIPNSVRIIVQMTIIA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTW 160
Cdd:PRK09292  81 SLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAFAMKNPPIPSFLDGIGNGLGYGAILLIVAFFRELFGSGTL 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 491445758 161 FGIELLPLVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVEAK 209
Cdd:PRK09292 161 FGFTVLPTVQNGGWYQPNGLMLLPPSAFFLIGLLIWVIRTWKPEQVEKK 209
nqrD TIGR01939
NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD ...
 4-207 2.80e-109

NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit; This model represents the NqrD subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 130994  Cd Length: 207  Bit Score: 311.67  E-value: 2.80e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758    4 KSEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLV 83
Cdd:TIGR01939   3 NKSYKEYLLDPLWSNNPILLQILGICSALAVTTKLQTAIVMAIAVTFVTGFSNFFVSLLRNTIPNSIRMIVQLVIIASLV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   84 IVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWFGI 163
Cdd:TIGR01939  83 IVVDQVLKAFAYDISKQLSVFVGLIITNCIVMGRAEAFAMANPPIPSFLDGIGNGLGYGWVLVIIGFFRELFGSGTLLGI 162

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 491445758  164 ELLP-LVNNGGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVE 207
Cdd:TIGR01939 163 RVIPkLYYSGGWYQNNGLMLLAPSAFFLIGIVIWVVRIRKKDQQE 207
Rnf-Nqr pfam02508
Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including ...
 7-194 1.26e-73

Rnf-Nqr subunit, membrane protein; This is a family of integral membrane proteins including Rhodobacter-specific nitrogen fixation (rnf) proteins RnfA and RnfE and Na+-translocating NADH:ubiquinone oxidoreductase (Na+-NQR) subunits NqrD and NqrE.


Pssm-ID: 460575  Cd Length: 181  Bit Score: 220.37  E-value: 1.26e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758    7 MKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLVIVV 86
Cdd:pfam02508   1 LLKIFISGIFVNNPVLVQFLGLCPFLAVTKKLENALGMGLAVTFVLTLSNVVISLLRNFIPDYLRIIVFILVIAALVQLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   87 DQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWFGIELL 166
Cdd:pfam02508  81 EMVLKAYSPALYKALGIFLPLIVTNCIILGRAEAFASKNPFLESLVDGLGMGLGFTLALVLLAGIRELLGRGTPIGGQIL 160

                         170       180
                  ....*....|....*....|....*...
gi 491445758  167 plvnnggWYVPNGLLLLPPSAFFIIGLI 194
Cdd:pfam02508 161 -------GYQPLILAGLPPGAFMGFGGL 181
RnfE COG4660
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and ...
 5-209 1.12e-68

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443698  Cd Length: 209  Bit Score: 208.83  E-value: 1.12e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   5 SEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLVI 84
Cdd:COG4660    1 MSYKKIFTNGLWKNNPVFVQLLGLCPLLAVTTSATNGLGMGLATTFVLVCSNILVSLLRNLIPDEVRIPVFIVIIATFVT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  85 VVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWFGIE 164
Cdd:COG4660   81 IVDLLMNAYFPELYKALGIFIPLIVVNCIILGRAEAFASKNPVLPSALDGLGMGLGFTLALVLLGAVRELLGAGTLFGIT 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 491445758 165 LLPlvnngGWYVPNGLLLLPPSAFFIIGLIIWGVRTKDPKQVEAK 209
Cdd:COG4660  161 LFP-----ESYQPFLLMILPPGAFIVLGLLLALKNWIDKRKKARA 200
PRK12405 PRK12405
electron transport complex RsxE subunit; Provisional
 5-195 6.01e-58

electron transport complex RsxE subunit; Provisional


Pssm-ID: 237091  Cd Length: 231  Bit Score: 182.37  E-value: 6.01e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   5 SEMKKLLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLVI 84
Cdd:PRK12405   2 SEYKEIFKNGLWKNNPALVQLLGLCPLLAVTTTATNALGLGLATTLVLVCSNLTVSLLRKWIPKEIRIPIFVMIIASFVT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  85 VVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWF-GI 163
Cdd:PRK12405  82 VVQLLMNAYAYGLYQSLGIFIPLIVTNCIILGRAEAFASKNGVLLSALDGLGMGLGFTLALVVLGAIREILGNGTLFdGA 161

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 491445758 164 ELLPLVNNGGWYVP-----NGLLL--LPPSAFFIIGLII 195
Cdd:PRK12405 162 DLLLGPWAKVLRIEvfhtdSPFLLaiLPPGAFIGLGLLL 200
rnfE TIGR01948
electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in ...
 18-204 3.33e-51

electron transport complex, RnfABCDGE type, E subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the E subunit. [Energy metabolism, Electron transport]


Pssm-ID: 162619  Cd Length: 196  Bit Score: 164.05  E-value: 3.33e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   18 NNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSVRIIAQMAVIASLVIVVDQVLKAYAYDI 97
Cdd:TIGR01948  11 NNPTLVQLLGLCPTLAVTTSAINGLGMGLATTFVLVGSNMVVSLVRKFIPKEVRIPVFIVIIASFVTCVDMLMNAYTYDL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758   98 SKQLSVFVGLIITNCIVMGRAEAYAMKSAPLPSFLDGIGNGLGYGAVLLTVATVREILGSGTWFGIELLpLVNNGGWYVP 177
Cdd:TIGR01948  91 YKSLGIFIPLIVVNCIILGRAEAFASKNGVLPSILDGLGMGLGFTLVLFVLGGIREILGNGTLLDFGMF-VITVFGKFSP 169

                         170       180
                  ....*....|....*....|....*..
gi 491445758  178 NGLLLLPPSAFFIIGLIIWGVRTKDPK 204
Cdd:TIGR01948 170 ALLAILPPGAFITLGFLIALKNYIDEK 196
RnfA COG4657
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and ...
 10-153 1.38e-19

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443695  Cd Length: 193  Bit Score: 82.09  E-value: 1.38e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  10 LLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNSV-----RIIAQMAVIASLVI 84
Cdd:COG4657    7 IFISAILVNNFVLVQFLGLCPFLGVSKKLETAIGMGLAVTFVMTLASAISWLIYNYILVPLgleylRTIVFILVIAALVQ 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  85 VVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSA-PLPSFLDGIGNGLGYGAVLLTVATVRE 153
Cdd:COG4657   87 FVEMVLKKVSPALYRALGIYLPLITTNCAVLGVALLNVQQGYnFLESLVFGFGAGLGFTLALVLFAGIRE 156
PRK05151 PRK05151
electron transport complex protein RsxA; Provisional
 10-155 1.62e-11

electron transport complex protein RsxA; Provisional


Pssm-ID: 235352  Cd Length: 193  Bit Score: 60.78  E-value: 1.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  10 LLLTPVLGNNPIALQVLGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQI-----PNSVRIIAQMAVIASLVI 84
Cdd:PRK05151   7 LFVSTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASICAWLVNTYIlipldLIYLRTLAFILVIAVVVQ 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491445758  85 VVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAP-LPSFLDGIGNGLGYGAVLLTVATVREIL 155
Cdd:PRK05151  87 FTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINLGHNfLQSALYGFGAAVGFSLVLVLFAAIRERL 158
NqrE COG2209
Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and ...
 26-153 1.41e-08

Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE [Energy production and conversion]; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE is part of the Pathway/BioSystem: Na+-translocating NADH dehydrogenase


Pssm-ID: 441811  Cd Length: 202  Bit Score: 52.53  E-value: 1.41e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  26 LGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQI--PNS-------------VRIIAQMAVIASLVIVVDQVL 90
Cdd:COG2209   23 LGMCTFLAVSKKVKTAFGLGIAVIFVLTITVPLNWLIYNYLlkPGAlawagladvdlsfLGLITFIGVIAAMVQILEMVL 102

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491445758  91 KAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPL-PSFLDGIGNGLGYGAVLLTVATVRE 153
Cdd:COG2209  103 DKFSPALYNALGIFLPLITVNCAILGGSLFMVERDYNFgESVVYGFGSGLGWALAIVALAAIRE 166
PRK12456 PRK12456
Na(+)-translocating NADH-quinone reductase subunit E; Provisional
 26-153 3.61e-06

Na(+)-translocating NADH-quinone reductase subunit E; Provisional


Pssm-ID: 84141  Cd Length: 199  Bit Score: 45.74  E-value: 3.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  26 LGVCSALAVTSQMKTAFVMTLAVTAVTAFSNLFISLIRNQIPNS-----------VRIIAQMAVIASLVIVVDQVLKAYA 94
Cdd:PRK12456  24 LGMCTFLAISKKVETAFGLGLTVTALLAIATPLNNLIYTYILREnalidgvdlsfLDFITFIGVLAALVQILEMVLERFL 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  95 YDISKQLSVFVGLIITNCIVMGRAEAYAMKSAPLP-SFLDGIGNGLGYGAVLLTVATVRE 153
Cdd:PRK12456 104 PSLHHTLGAFLPLLTIHCAIFGATIFMVQREYTFTeSFVYGTGCGLGWMLAIISMAGLRE 163
PRK01061 PRK01061
Na(+)-translocating NADH-quinone reductase subunit E; Provisional
 10-155 1.25e-03

Na(+)-translocating NADH-quinone reductase subunit E; Provisional


Pssm-ID: 234895  Cd Length: 244  Bit Score: 38.61  E-value: 1.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  10 LLLTPVLGNNPIALQVLGVCSALAVTSQMKTA--------FVMTLA----------VTAVTAFSNLFISLIRNQIpNSVR 71
Cdd:PRK01061  14 IFLQATFIQNILLSNFLGMCSYLACSSRLSTAnglgmsvaLVLTVTgsinwfvhafITGPGALTWLSPALANVNL-SFLE 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491445758  72 IIAQMAVIASLVIVVDQVLKAYAYDISKQLSVFVGLIITNCIVMGRAEAYAMKSAP-LPSFLDGIGNGLGYGAVLLTVAT 150
Cdd:PRK01061  93 LIIFIVVIAAFTQILELLLEKVSRNLYLSLGIFLPLIAVNCAILGGVLFGITRNYPfIPMMIFSLGAGCGWWLAIVLFAT 172


                 ....*
gi 491445758 151 VREIL 155
Cdd:PRK01061 173 IREKL 177
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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