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Conserved domains on  [gi|491455633|ref|WP_005313414|]
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MULTISPECIES: aminoglycoside phosphotransferase family protein [Acinetobacter]

Protein Classification

aminoglycoside phosphotransferase family protein( domain architecture ID 10007012)

aminoglycoside phosphotransferase family protein catalyzes the phosphorylation of small molecule substrates such as aminoglycoside antibiotics and N-acetylhexosamine; similar to Neisseria meningitidis N-acetylmuramate/N-acetylglucosamine kinase

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3178 COG3178
Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family [General ...
3-324 8.57e-130

Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family [General function prediction only];


:

Pssm-ID: 442411  Cd Length: 327  Bit Score: 373.38  E-value: 8.57e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   3 TQREQLIQTWLQATLQSDQFEINFLAGDASFRRYARITIQNKTYMLMDAPPEKEDCAPFVSIDEFFDKNGVRVPHIVAKD 82
Cdd:COG3178    2 DDREAALRAFLARALGWADATLEPLAGDASFRRYFRLTLGDRSAILMDAPPEKEDVRPFVAIARLLRAAGLSVPEILAAD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633  83 LTLGLLLLEDFGDVVLSTLLN-DQTVDQYYAQSFKQLIELQQINGNAQLPAYSYEKLMTEMRLLTDWMLPS-LNIQPTEQ 160
Cdd:COG3178   82 LEQGFLLLEDLGDTTLLDALDaGENADELYRAAIDALARLQAAPAPADLPPYDEALLLRELDLFPDWYLPRhLGLPLDDA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 161 QLETIEQAFDFLAIEATNQPQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIGADTYDLISITRDAYVQWNAERVYEWFE 240
Cdd:COG3178  162 ERAELEAAFEALLDSLLAQPRVLVHRDFHSRNLM-VLPDGRPGLIDFQDAVLGPPAYDLVSLLRDAYVDWPEELVEALLD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 241 VFYNLLPaAAKENRSFEQFKRDADLMAIQRHLKILGIFVRLFERDGKSGYLKDLPRVMWYLLEESQGYDELNDFMQFIRD 320
Cdd:COG3178  241 RYLAAAR-AALPPFDFAAFLRAYALMGLQRHLKILGIFARLALRDGKPGYLADIPRVLRYLRRVLAHYPELAPLARWLDE 319

                 ....
gi 491455633 321 IVMP 324
Cdd:COG3178  320 LVLP 323
 
Name Accession Description Interval E-value
COG3178 COG3178
Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family [General ...
3-324 8.57e-130

Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family [General function prediction only];


Pssm-ID: 442411  Cd Length: 327  Bit Score: 373.38  E-value: 8.57e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   3 TQREQLIQTWLQATLQSDQFEINFLAGDASFRRYARITIQNKTYMLMDAPPEKEDCAPFVSIDEFFDKNGVRVPHIVAKD 82
Cdd:COG3178    2 DDREAALRAFLARALGWADATLEPLAGDASFRRYFRLTLGDRSAILMDAPPEKEDVRPFVAIARLLRAAGLSVPEILAAD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633  83 LTLGLLLLEDFGDVVLSTLLN-DQTVDQYYAQSFKQLIELQQINGNAQLPAYSYEKLMTEMRLLTDWMLPS-LNIQPTEQ 160
Cdd:COG3178   82 LEQGFLLLEDLGDTTLLDALDaGENADELYRAAIDALARLQAAPAPADLPPYDEALLLRELDLFPDWYLPRhLGLPLDDA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 161 QLETIEQAFDFLAIEATNQPQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIGADTYDLISITRDAYVQWNAERVYEWFE 240
Cdd:COG3178  162 ERAELEAAFEALLDSLLAQPRVLVHRDFHSRNLM-VLPDGRPGLIDFQDAVLGPPAYDLVSLLRDAYVDWPEELVEALLD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 241 VFYNLLPaAAKENRSFEQFKRDADLMAIQRHLKILGIFVRLFERDGKSGYLKDLPRVMWYLLEESQGYDELNDFMQFIRD 320
Cdd:COG3178  241 RYLAAAR-AALPPFDFAAFLRAYALMGLQRHLKILGIFARLALRDGKPGYLADIPRVLRYLRRVLAHYPELAPLARWLDE 319

                 ....
gi 491455633 321 IVMP 324
Cdd:COG3178  320 LVLP 323
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
23-252 5.26e-21

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 90.25  E-value: 5.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   23 EINFLAGDASFRRYARITiQNKTYMLMDAPPE--KEDCAPFVSIDEFFDKNGV-RVPHIVAKDLTLGLLLL-----EDFG 94
Cdd:pfam01636   1 TLRPISSGASNRTYLVTT-GDGRYVLRLPPPGraAEELRRELALLRHLAAAGVpPVPRVLAGCTDAELLGLpfllmEYLP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   95 DVVLSTLLNDQTVDQYYAQSFKQLIELQQINGNAQLPAYSYEKLMTEMRLLTDWMLPSLNIQPTEQQLETIEQAFDFLAI 174
Cdd:pfam01636  80 GEVLARPLLPEERGALLEALGRALARLHAVDPAALPLAGRLARLLELLRQLEAALARLLAAELLDRLEELEERLLAALLA 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491455633  175 E-ATNQPQVIVHRDFHSRNLMKIEDEQELGVIDFQDAVIGADTYDLISITRDAYVQWNAERVYEWFEVFYNLLPAAAKE 252
Cdd:pfam01636 160 LlPAELPPVLVHGDLHPGNLLVDPGGRVSGVIDFEDAGLGDPAYDLAILLNSWGRELGAELLAAYLAAYGAFGYARLRE 238
HomoserineK_II cd05153
Type II Homoserine Kinase; This subfamily is composed of unusual homoserine kinases, from a ...
141-219 4.54e-04

Type II Homoserine Kinase; This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270702 [Multi-domain]  Cd Length: 300  Bit Score: 41.48  E-value: 4.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 141 EMRLLTDWMLPSLN------IQPTEQQLETIEQAFDFLAIEATNQ-PQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIG 213
Cdd:cd05153  132 PNPRGLAWWKPLAErlkarlDLLAADDRALLEDELARLQALAPSDlPRGVIHADLFRDNVL-FDGDRLSGIIDFYDACYD 210

                 ....*.
gi 491455633 214 ADTYDL 219
Cdd:cd05153  211 PLLYDL 216
 
Name Accession Description Interval E-value
COG3178 COG3178
Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family [General ...
3-324 8.57e-130

Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family [General function prediction only];


Pssm-ID: 442411  Cd Length: 327  Bit Score: 373.38  E-value: 8.57e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   3 TQREQLIQTWLQATLQSDQFEINFLAGDASFRRYARITIQNKTYMLMDAPPEKEDCAPFVSIDEFFDKNGVRVPHIVAKD 82
Cdd:COG3178    2 DDREAALRAFLARALGWADATLEPLAGDASFRRYFRLTLGDRSAILMDAPPEKEDVRPFVAIARLLRAAGLSVPEILAAD 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633  83 LTLGLLLLEDFGDVVLSTLLN-DQTVDQYYAQSFKQLIELQQINGNAQLPAYSYEKLMTEMRLLTDWMLPS-LNIQPTEQ 160
Cdd:COG3178   82 LEQGFLLLEDLGDTTLLDALDaGENADELYRAAIDALARLQAAPAPADLPPYDEALLLRELDLFPDWYLPRhLGLPLDDA 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 161 QLETIEQAFDFLAIEATNQPQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIGADTYDLISITRDAYVQWNAERVYEWFE 240
Cdd:COG3178  162 ERAELEAAFEALLDSLLAQPRVLVHRDFHSRNLM-VLPDGRPGLIDFQDAVLGPPAYDLVSLLRDAYVDWPEELVEALLD 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 241 VFYNLLPaAAKENRSFEQFKRDADLMAIQRHLKILGIFVRLFERDGKSGYLKDLPRVMWYLLEESQGYDELNDFMQFIRD 320
Cdd:COG3178  241 RYLAAAR-AALPPFDFAAFLRAYALMGLQRHLKILGIFARLALRDGKPGYLADIPRVLRYLRRVLAHYPELAPLARWLDE 319

                 ....
gi 491455633 321 IVMP 324
Cdd:COG3178  320 LVLP 323
APH pfam01636
Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance ...
23-252 5.26e-21

Phosphotransferase enzyme family; This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.


Pssm-ID: 426359 [Multi-domain]  Cd Length: 239  Bit Score: 90.25  E-value: 5.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   23 EINFLAGDASFRRYARITiQNKTYMLMDAPPE--KEDCAPFVSIDEFFDKNGV-RVPHIVAKDLTLGLLLL-----EDFG 94
Cdd:pfam01636   1 TLRPISSGASNRTYLVTT-GDGRYVLRLPPPGraAEELRRELALLRHLAAAGVpPVPRVLAGCTDAELLGLpfllmEYLP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633   95 DVVLSTLLNDQTVDQYYAQSFKQLIELQQINGNAQLPAYSYEKLMTEMRLLTDWMLPSLNIQPTEQQLETIEQAFDFLAI 174
Cdd:pfam01636  80 GEVLARPLLPEERGALLEALGRALARLHAVDPAALPLAGRLARLLELLRQLEAALARLLAAELLDRLEELEERLLAALLA 159
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491455633  175 E-ATNQPQVIVHRDFHSRNLMKIEDEQELGVIDFQDAVIGADTYDLISITRDAYVQWNAERVYEWFEVFYNLLPAAAKE 252
Cdd:pfam01636 160 LlPAELPPVLVHGDLHPGNLLVDPGGRVSGVIDFEDAGLGDPAYDLAILLNSWGRELGAELLAAYLAAYGAFGYARLRE 238
SrkA COG2334
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist [Signal ...
147-240 5.75e-05

Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist [Signal transduction mechanisms]; Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist is part of the Pathway/BioSystem: Threonine biosynthesis


Pssm-ID: 441905 [Multi-domain]  Cd Length: 297  Bit Score: 44.15  E-value: 5.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 147 DWMLPSLNIQPTEQQL--ETIEQAFDFLAIEATNQPQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIGADTYDL-ISIT 223
Cdd:COG2334  143 ERLLGPLLPDPEDRALleELLDRLEARLAPLLGALPRGVIHGDLHPDNVL-FDGDGVSGLIDFDDAGYGPRLYDLaIALN 221
                         90
                 ....*....|....*..
gi 491455633 224 RDAYVQWNAERVYEWFE 240
Cdd:COG2334  222 GWADGPLDPARLAALLE 238
YcbJ COG3173
Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction ...
166-213 2.64e-04

Predicted kinase, aminoglycoside phosphotransferase (APT) family [General function prediction only];


Pssm-ID: 442406 [Multi-domain]  Cd Length: 284  Bit Score: 42.02  E-value: 2.64e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 491455633 166 EQAFDFL-AIEATNQPQVIVHRDFHSRNLMKIEDEQEL-GVIDFQDAVIG 213
Cdd:COG3173  176 ERLAAWLaANLPEWGPPVLVHGDLRPGNLLVDPDDGRLtAVIDWELATLG 225
HomoserineK_II cd05153
Type II Homoserine Kinase; This subfamily is composed of unusual homoserine kinases, from a ...
141-219 4.54e-04

Type II Homoserine Kinase; This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270702 [Multi-domain]  Cd Length: 300  Bit Score: 41.48  E-value: 4.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 141 EMRLLTDWMLPSLN------IQPTEQQLETIEQAFDFLAIEATNQ-PQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIG 213
Cdd:cd05153  132 PNPRGLAWWKPLAErlkarlDLLAADDRALLEDELARLQALAPSDlPRGVIHADLFRDNVL-FDGDRLSGIIDFYDACYD 210

                 ....*.
gi 491455633 214 ADTYDL 219
Cdd:cd05153  211 PLLYDL 216
APH_ChoK_like cd05120
Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ...
158-225 2.71e-03

Aminoglycoside 3'-phosphotransferase and Choline Kinase family; This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).


Pssm-ID: 270690 [Multi-domain]  Cd Length: 158  Bit Score: 38.05  E-value: 2.71e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491455633 158 TEQQLETI-EQAFDFLAIEATNQPQVIVHRDFHSRNLMKIEDEQELGVIDFQDAVIGADTYDLISITRD 225
Cdd:cd05120   87 SEEEKEKIaDQLAEILAALHRIDSSVLTHGDLHPGNILVKPDGKLSGIIDWEFAGYGPPAFDYAAALRD 155
CotS COG0510
Thiamine kinase or a related kinase [Coenzyme transport and metabolism];
152-272 7.30e-03

Thiamine kinase or a related kinase [Coenzyme transport and metabolism];


Pssm-ID: 440276 [Multi-domain]  Cd Length: 156  Bit Score: 36.68  E-value: 7.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491455633 152 SLNIQPTEQQLETIEQAFDflAIEATNQPQVIVHRDFHSRNLMkIEDEQELGVIDFQDAVIGADTYDLISITRDAyvQWN 231
Cdd:COG0510   22 ALGPRDLPELLRRLEELER--ALAARPLPLVLCHGDLHPGNFL-VTDDGRLYLIDWEYAGLGDPAFDLAALLVEY--GLS 96
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 491455633 232 AERVYEWFEvFYNLLPAAAKENRSFEQFKRDADLMAIQRHL 272
Cdd:COG0510   97 PEQAEELLE-AYGFGRPTEELLRRLRAYRALADLLWALWAL 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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