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Conserved domains on  [gi|491556223|ref|WP_005413813|]
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MULTISPECIES: YfeK family protein [Stenotrophomonas]

Protein Classification

YfeK family protein( domain architecture ID 10013487)

YfeK family protein is a DUF5329 domain-containing protein, similar to Escherichia coli protein YfeK which may be a component of the sigmaE response and involved in maintaining cell envelope homeostasis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10318 PRK10318
hypothetical protein; Provisional
 22-122 1.83e-52

hypothetical protein; Provisional


:

Pssm-ID: 236672  Cd Length: 121  Bit Score: 161.07  E-value: 1.83e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491556223  22 PSTDARREIAQLIASLDGSQCRFQRNGSWYDGSDARAHLQRKYDylLKKGMVDSAEQFIERAASQSSMSGKPYRIQCPGQ 101
Cdd:PRK10318  21 TAHEEARINAMLEGLAQKKDCTFVRNGDEHTCKEAVSHLRLKLG--NTRNRIDTAEQFIDKVASSSSISGKPYIVKCPGK 98

                         90       100
                 ....*....|....*....|.
gi 491556223 102 PEQTAAAWFGARLQALRHRTP 122
Cdd:PRK10318  99 SDENAQPWLHALIAETDKTVP 119
 
Name Accession Description Interval E-value
PRK10318 PRK10318
hypothetical protein; Provisional
 22-122 1.83e-52

hypothetical protein; Provisional


Pssm-ID: 236672  Cd Length: 121  Bit Score: 161.07  E-value: 1.83e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491556223  22 PSTDARREIAQLIASLDGSQCRFQRNGSWYDGSDARAHLQRKYDylLKKGMVDSAEQFIERAASQSSMSGKPYRIQCPGQ 101
Cdd:PRK10318  21 TAHEEARINAMLEGLAQKKDCTFVRNGDEHTCKEAVSHLRLKLG--NTRNRIDTAEQFIDKVASSSSISGKPYIVKCPGK 98

                         90       100
                 ....*....|....*....|.
gi 491556223 102 PEQTAAAWFGARLQALRHRTP 122
Cdd:PRK10318  99 SDENAQPWLHALIAETDKTVP 119
DUF5329 pfam17263
Family of unknown function (DUF5329); This is a bacterial family of proteins with unknown ...
 26-118 4.44e-47

Family of unknown function (DUF5329); This is a bacterial family of proteins with unknown function.


Pssm-ID: 465394  Cd Length: 95  Bit Score: 146.67  E-value: 4.44e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491556223   26 ARREIAQLIASLDGSQCRFQRNGSWYDGSDARAHLQRKYDYLLKKGMVDSAEQFIERAASQSSMSGKPYRIQCPGQPEQT 105
Cdd:pfam17263   3 TEAEINALLSALESSGCEFIRNGSEHDAKEAREHLRRKYDYLRGKGLISTAEDFIDRAASKSSISGKPYQVKCPGGATVE 82

                          90
                  ....*....|...
gi 491556223  106 AAAWFGARLQALR 118
Cdd:pfam17263  83 SGQWLTEELKRLR 95
 
Name Accession Description Interval E-value
PRK10318 PRK10318
hypothetical protein; Provisional
 22-122 1.83e-52

hypothetical protein; Provisional


Pssm-ID: 236672  Cd Length: 121  Bit Score: 161.07  E-value: 1.83e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491556223  22 PSTDARREIAQLIASLDGSQCRFQRNGSWYDGSDARAHLQRKYDylLKKGMVDSAEQFIERAASQSSMSGKPYRIQCPGQ 101
Cdd:PRK10318  21 TAHEEARINAMLEGLAQKKDCTFVRNGDEHTCKEAVSHLRLKLG--NTRNRIDTAEQFIDKVASSSSISGKPYIVKCPGK 98

                         90       100
                 ....*....|....*....|.
gi 491556223 102 PEQTAAAWFGARLQALRHRTP 122
Cdd:PRK10318  99 SDENAQPWLHALIAETDKTVP 119
DUF5329 pfam17263
Family of unknown function (DUF5329); This is a bacterial family of proteins with unknown ...
 26-118 4.44e-47

Family of unknown function (DUF5329); This is a bacterial family of proteins with unknown function.


Pssm-ID: 465394  Cd Length: 95  Bit Score: 146.67  E-value: 4.44e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491556223   26 ARREIAQLIASLDGSQCRFQRNGSWYDGSDARAHLQRKYDYLLKKGMVDSAEQFIERAASQSSMSGKPYRIQCPGQPEQT 105
Cdd:pfam17263   3 TEAEINALLSALESSGCEFIRNGSEHDAKEAREHLRRKYDYLRGKGLISTAEDFIDRAASKSSISGKPYQVKCPGGATVE 82

                          90
                  ....*....|...
gi 491556223  106 AAAWFGARLQALR 118
Cdd:pfam17263  83 SGQWLTEELKRLR 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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