|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
134-487 |
1.96e-166 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 477.34 E-value: 1.96e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 134 FRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGA 213
Cdd:COG3829 137 FDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 214 FTGALTA-RKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFRE 292
Cdd:COG3829 217 FTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 293 DLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC-FTPRAINSLMEHNWPGNVRELANLVERMVILYPNSL 371
Cdd:COG3829 297 DLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 372 VDVNHLPTKYRysdipefqpegnpfttveeqerdvfqdifsenfsfeeqsdldhnMNAPQALPPEGVNLKELLADMEVNM 451
Cdd:COG3829 377 ITPEHLPEYLL--------------------------------------------EEAEAASAAEEGSLKEALEEVEKEL 412
|
330 340 350
....*....|....*....|....*....|....*.
gi 491590786 452 ISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:COG3829 413 IEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
137-304 |
3.27e-118 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 343.61 E-value: 3.27e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTG 216
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 217 ALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFY 296
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 491590786 297 RLNVFPIE 304
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
137-482 |
1.46e-114 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 345.57 E-value: 1.46e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTG 216
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 217 ALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFY 296
Cdd:TIGR01818 216 ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 297 RLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGG-QPICFTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVN 375
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDvEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVS 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 376 HLPTKYRYSDIPEFQPEGNPFTTVEEQERDVFQDIFSEnfsfeeqsdldhnmnAPQALppegvnLKELLADMEVNMISQA 455
Cdd:TIGR01818 376 DLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSR---------------GEQGL------LDRALPEFERPLLEAA 434
|
330 340
....*....|....*....|....*..
gi 491590786 456 LEAQGGVVARAADMLGMRRTTLVEKMR 482
Cdd:TIGR01818 435 LQHTRGHKQEAAALLGWGRNTLTRKLK 461
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
141-484 |
5.74e-113 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 341.44 E-value: 5.74e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 141 SRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTGALTA 220
Cdd:PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 221 RKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNV 300
Cdd:PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 301 FPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC-FTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVNHLPT 379
Cdd:PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIdIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPP 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 380 KYRysdipefQPEGNPFTTveeqerdvfqdifsenfsfeeqsdldhnmnapQALPPEGVNLKELLADMEVNMISQALEAQ 459
Cdd:PRK11361 389 QIR-------QPVCNAGEV--------------------------------KTAPVGERNLKEEIKRVEKRIIMEVLEQQ 429
|
330 340
....*....|....*....|....*
gi 491590786 460 GGVVARAADMLGMRRTTLVEKMRKY 484
Cdd:PRK11361 430 EGNRTRTALMLGISRRALMYKLQEY 454
|
|
| FleQ |
pfam06490 |
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of ... |
6-114 |
3.30e-36 |
|
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Pssm-ID: 428975 [Multi-domain] Cd Length: 108 Bit Score: 129.62 E-value: 3.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 6 KLLVIDDDAPSRLNISNILEFVGESCEAVSSDQLGDVDWSSVWSGCIVANISaGQAATAVMTQLNEAYHIPLLVMGSFPL 85
Cdd:pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAISSEDLSAALWSSRWEALAVILGS-VSAAELLKALAKWDPHLPVLLLGETDD 79
|
90 100
....*....|....*....|....*....
gi 491590786 86 PVdDLPNFVGELEQPLNYPQLSEALRHCK 114
Cdd:pfam06490 80 AL-ELANVIGTLEEPLNYPQLTDLLHRCQ 107
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
138-299 |
1.15e-26 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 105.31 E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 138 VGQSRGIQEVRHLIEQVSGteANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEkgaftgA 217
Cdd:cd00009 1 VGQEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 218 LTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQErcferVGGNTTIKVNVRVVAATHRDletmiDDGTFREDLFYR 297
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRP-----LLGDLDRALYDR 142
|
..
gi 491590786 298 LN 299
Cdd:cd00009 143 LD 144
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
160-298 |
2.33e-14 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 70.48 E-value: 2.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 160 NVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLES---ELFGHEKGAFTGALTARKgRFELAEG---GTI 233
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRL-ALALARKlkpDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491590786 234 FLDEIGDMPMSMQVKLLRVLQErcfERVGGNTTIKVNVRVVAATHR--DLETMIDDGTFREDLFYRL 298
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
134-487 |
1.96e-166 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 477.34 E-value: 1.96e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 134 FRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGA 213
Cdd:COG3829 137 FDDIIGKSPAMKELLELAKRVAKSDSTVLILGESGTGKELFARAIHNASPRRDGPFVAVNCAAIPENLLESELFGYEKGA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 214 FTGALTA-RKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFRE 292
Cdd:COG3829 217 FTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTKPIPVDVRIIAATNRDLEEMVEEGRFRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 293 DLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC-FTPRAINSLMEHNWPGNVRELANLVERMVILYPNSL 371
Cdd:COG3829 297 DLYYRLNVIPIHIPPLRERKEDIPLLAEHFLEKFNKKYGKNIKgISPEALELLLAYDWPGNVRELENVIERAVVLSEGDV 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 372 VDVNHLPTKYRysdipefqpegnpfttveeqerdvfqdifsenfsfeeqsdldhnMNAPQALPPEGVNLKELLADMEVNM 451
Cdd:COG3829 377 ITPEHLPEYLL--------------------------------------------EEAEAASAAEEGSLKEALEEVEKEL 412
|
330 340 350
....*....|....*....|....*....|....*.
gi 491590786 452 ISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:COG3829 413 IEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGIK 448
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
5-485 |
3.25e-157 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 452.88 E-value: 3.25e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 5 AKLLVIDDDAPSRLNISNILEFVGESCEAVSS-----DQLGDVDWssvwsGCIVANIS-AGQAATAVMTQLNEAY-HIPL 77
Cdd:COG2204 3 ARILVVDDDPDIRRLLKELLERAGYEVETAASgeealALLREEPP-----DLVLLDLRmPGMDGLELLRELRALDpDLPV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 78 LVMGSFPlPVDDLPNFVGE-----LEQPLNYPQLSEALRHCkdflgrkgVNVVASARKNTLFRSLVGQSRGIQEVRHLIE 152
Cdd:COG2204 78 ILLTGYG-DVETAVEAIKAgafdyLTKPFDLEELLAAVERA--------LERRRLRRENAEDSGLIGRSPAMQEVRRLIE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 153 QVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTGALTARKGRFELAEGGT 232
Cdd:COG2204 149 KVAPSDATVLITGESGTGKELVARAIHRLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVARRIGKFELADGGT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 233 IFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNVFPIEMPALKARK 312
Cdd:COG2204 229 LFLDEIGEMPLALQAKLLRVLQEREFERVGGNKPIPVDVRVIAATNRDLEELVEEGRFREDLYYRLNVFPIELPPLRERR 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 313 QDIPLLLQELMTRLEAEGGQPICFTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVNHLPtkyrysdipefqpe 392
Cdd:COG2204 309 EDIPLLARHFLARFAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAEDLP-------------- 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 393 gnpfttveeqerdvfqdifsenfsfeeqsdldhnmnapqalppegvnlkELLADMEVNMISQALEAQGGVVARAADMLGM 472
Cdd:COG2204 375 -------------------------------------------------EALEEVERELIERALEETGGNVSRAAELLGI 405
|
490
....*....|...
gi 491590786 473 RRTTLVEKMRKYN 485
Cdd:COG2204 406 SRRTLYRKLKKYG 418
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
119-485 |
5.15e-124 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 375.01 E-value: 5.15e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 119 RKGVNVVASARKNTLFRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIP 198
Cdd:COG3284 305 RAARAAPAGAPAPAALAALAGGDPAMRRALRRARRLADRDIPVLILGETGTGKELFARAIHAASPRADGPFVAVNCAAIP 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 199 PELLESELFGHEKGAFTGALT-ARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAAT 277
Cdd:COG3284 385 EELIESELFGYEPGAFTGARRkGRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTKPIPVDVRLIAAT 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 278 HRDLETMIDDGTFREDLFYRLNVFPIEMPALKARkQDIPLLLQELMTRLeAEGGQPICFTPRAINSLMEHNWPGNVRELA 357
Cdd:COG3284 465 HRDLRELVAAGRFREDLYYRLNGLTLTLPPLRER-EDLPALIEHLLREL-AAGRGPLRLSPEALALLAAYPWPGNVRELR 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 358 NLVERMVILYPNSLVDVNHLPtkyrysdiPEFQPEgnpfttveeqerdvfqdifsenfsfeeqsdldhnmnaPQALPPEG 437
Cdd:COG3284 543 NVLRTALALADGGVITVEDLP--------DELRAE-------------------------------------LAAAAPAA 577
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 491590786 438 VNLKELLADMEVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRKYN 485
Cdd:COG3284 578 AAPLTSLEEAERDAILRALRACGGNVSAAARALGISRSTLYRKLKRYG 625
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
137-304 |
3.27e-118 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 343.61 E-value: 3.27e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTG 216
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTDAPVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 217 ALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFY 296
Cdd:pfam00158 81 ADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYY 160
|
....*...
gi 491590786 297 RLNVFPIE 304
Cdd:pfam00158 161 RLNVIPIE 168
|
|
| ntrC |
TIGR01818 |
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response ... |
137-482 |
1.46e-114 |
|
nitrogen regulation protein NR(I); This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems]
Pssm-ID: 273818 [Multi-domain] Cd Length: 463 Bit Score: 345.57 E-value: 1.46e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTG 216
Cdd:TIGR01818 136 LIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTG 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 217 ALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFY 296
Cdd:TIGR01818 216 ANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 297 RLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGG-QPICFTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVN 375
Cdd:TIGR01818 296 RLNVIRIHLPPLRERREDIPRLARHFLALAARELDvEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASGDEVLVS 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 376 HLPTKYRYSDIPEFQPEGNPFTTVEEQERDVFQDIFSEnfsfeeqsdldhnmnAPQALppegvnLKELLADMEVNMISQA 455
Cdd:TIGR01818 376 DLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSR---------------GEQGL------LDRALPEFERPLLEAA 434
|
330 340
....*....|....*....|....*..
gi 491590786 456 LEAQGGVVARAADMLGMRRTTLVEKMR 482
Cdd:TIGR01818 435 LQHTRGHKQEAAALLGWGRNTLTRKLK 461
|
|
| nifA |
TIGR01817 |
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein ... |
129-487 |
3.62e-113 |
|
Nif-specific regulatory protein; This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, DNA interactions]
Pssm-ID: 273817 [Multi-domain] Cd Length: 534 Bit Score: 344.39 E-value: 3.62e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 129 RKNTLFRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFG 208
Cdd:TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFG 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 209 HEKGAFTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDG 288
Cdd:TIGR01817 270 HEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKG 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 289 TFREDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPICFTPRAINSLMEHNWPGNVRELANLVERMVILYP 368
Cdd:TIGR01817 350 EFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLSR 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 369 NSLVDVNHLptkyrysdipEFQPEGNPFTTVEEQerdvfQDIFSENFSFEEQSDLDHNmNAPQALPPEGVNLKELLADME 448
Cdd:TIGR01817 430 SGTITRSDF----------SCQSGQCLSPMLAKT-----CPHGHISIDPLAGTTPPHS-PASAALPGEPGLSGPTLSERE 493
|
330 340 350
....*....|....*....|....*....|....*....
gi 491590786 449 VNMisQALEAQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:TIGR01817 494 RLI--AALEQAGWVQAKAARLLGMTPRQVGYALRKLNIE 530
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
141-484 |
5.74e-113 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 341.44 E-value: 5.74e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 141 SRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTGALTA 220
Cdd:PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 221 RKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNV 300
Cdd:PRK11361 229 RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNV 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 301 FPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC-FTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVNHLPT 379
Cdd:PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIdIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPP 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 380 KYRysdipefQPEGNPFTTveeqerdvfqdifsenfsfeeqsdldhnmnapQALPPEGVNLKELLADMEVNMISQALEAQ 459
Cdd:PRK11361 389 QIR-------QPVCNAGEV--------------------------------KTAPVGERNLKEEIKRVEKRIIMEVLEQQ 429
|
330 340
....*....|....*....|....*
gi 491590786 460 GGVVARAADMLGMRRTTLVEKMRKY 484
Cdd:PRK11361 430 EGNRTRTALMLGISRRALMYKLQEY 454
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
135-477 |
4.48e-105 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 322.51 E-value: 4.48e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 135 RSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAF 214
Cdd:PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAF 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 215 TGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDL 294
Cdd:PRK05022 267 TGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 295 FYRLNVFPIEMPALKARKQDIPLL----LQELMTRLeaeGGQPICFTPRAINSLMEHNWPGNVRELANLVERMVILypns 370
Cdd:PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLagyfLEQNRARL---GLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALL---- 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 371 lvdvnhlptkyrysdipefqpegnpfTTVEEQERDVfqDIFSENFSFEEQSDLDHNMNAPQALPPEGVNLKELLADMEVN 450
Cdd:PRK05022 420 --------------------------ARARGAGRIV--TLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQ 471
|
330 340
....*....|....*....|....*..
gi 491590786 451 MISQALEAQGGVVARAADMLGMRRTTL 477
Cdd:PRK05022 472 LIRQALAQHQGNWAAAARALELDRANL 498
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
127-486 |
2.31e-104 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 318.62 E-value: 2.31e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 127 SARKNTLFRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESEL 206
Cdd:TIGR02915 131 SALGGTALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESEL 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 207 FGHEKGAFTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMID 286
Cdd:TIGR02915 211 FGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 287 DGTFREDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPI-CFTPRAINSLMEHNWPGNVRELANLVERMVI 365
Cdd:TIGR02915 291 EGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTkGFTDDALRALEAHAWPGNVRELENKVKRAVI 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 366 LypnslvdvnhlptkyrysdipefqPEGNPFTTveeqerdvfqdifsenfsfeEQSDLDHNMNAPQalpPEGVNLKELLA 445
Cdd:TIGR02915 371 M------------------------AEGNQITA--------------------EDLGLDARERAET---PLEVNLREVRE 403
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 491590786 446 DMEVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNL 486
Cdd:TIGR02915 404 RAEREAVRKAIARVDGNIARAAELLGITRPTLYDLMKKHGI 444
|
|
| phageshock_pspF |
TIGR02974 |
psp operon transcriptional activator PspF; Members of this protein family are PspF, the ... |
137-484 |
3.00e-98 |
|
psp operon transcriptional activator PspF; Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH [Regulatory functions, DNA interactions]
Pssm-ID: 274371 [Multi-domain] Cd Length: 329 Bit Score: 298.83 E-value: 3.00e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVrhlIEQVSGT---EANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGA 213
Cdd:TIGR02974 1 LIGESNAFLEV---LEQVSRLaplDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 214 FTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFRED 293
Cdd:TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 294 LFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC--FTPRAINSLMEHNWPGNVRELANLVERMVILYPNSL 371
Cdd:TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFpgFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 372 VDVNHLPTkyrysdipefqpegNPFTTVEEQErdvfQDIFSENFSFEEQSDLDHNMNAPQALPpegVNLKELLADMEVNM 451
Cdd:TIGR02974 238 APIDEIII--------------DPFASPWRPK----QAAPAVDEVNSTPTDLPSPSSIAAAFP---LDLKQAQQDYEIEL 296
|
330 340 350
....*....|....*....|....*....|...
gi 491590786 452 ISQALEAQGGVVARAADMLGMRRTTLVEKMRKY 484
Cdd:TIGR02974 297 LQQALAEAQFNQRKAAELLGLTYHQLRGLLRKH 329
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
59-483 |
1.00e-95 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 296.56 E-value: 1.00e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 59 GQAATAVMTQLNEAyhIPLLVMGSFP---LPVDDLPNfvGELE---QPLNYPQLSE----ALRHCKDFlgrKGVNVVASA 128
Cdd:PRK10365 64 GIATLKEIKALNPA--IPVLIMTAYSsveTAVEALKT--GALDyliKPLDFDNLQAtlekALAHTHSI---DAETPAVTA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 129 RKNtlfrSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFG 208
Cdd:PRK10365 137 SQF----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFG 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 209 HEKGAFTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDG 288
Cdd:PRK10365 213 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAG 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 289 TFREDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPI-CFTPRAINSLMEHNWPGNVRELANLVERMVILY 367
Cdd:PRK10365 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVkGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 368 PNSLVDVNHLPTKYrysdipefqpegnpfttveeqerdvfqdifsenfsfeeqsdldhnmnAPQALPPEGVNLKELLADM 447
Cdd:PRK10365 373 TGEYISERELPLAI-----------------------------------------------ASTPIPLGQSQDIQPLVEV 405
|
410 420 430
....*....|....*....|....*....|....*.
gi 491590786 448 EVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
Cdd:PRK10365 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
134-392 |
1.91e-90 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 285.16 E-value: 1.91e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 134 FRSLVGQSRGIqevRHLIEQ---VSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHE 210
Cdd:COG3283 203 FDHIVASSPKM---RQVIRQakkMAMLDAPLLIQGETGTGKELLARACHLASPRGDKPFLALNCAALPDDVAESELFGYA 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 211 KGAFTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTF 290
Cdd:COG3283 280 PGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGEEQEVKVDVRVICATQKDLAELVQEGEF 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 291 REDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC-FTPRAINSLMEHNWPGNVRELANLVERMVILYPN 369
Cdd:COG3283 360 REDLYYRLNVLTLTLPPLRERKSDILPLAEHFVARFSQQLGRPRPrLSPDLVDFLQSYPWPGNVRQLENALYRAVSLLEG 439
|
250 260
....*....|....*....|...
gi 491590786 370 SLVDVNHLptkyrysDIPEFQPE 392
Cdd:COG3283 440 DELTPEDL-------QLPEYAAS 455
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
134-483 |
1.41e-87 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 282.49 E-value: 1.41e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 134 FRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGA 213
Cdd:PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 214 FTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFRED 293
Cdd:PRK15429 455 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSD 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 294 LFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPICFTP-RAINSLMEHNWPGNVRELANLVERMVILYPNSLV 372
Cdd:PRK15429 535 LYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPaETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 373 DVNhlptkyrysdIPEFQPEGNPFTTveeqerdvfqdifsenfsfeeqsdldhnmnAPQALPPEGVNlkelladmEVNMI 452
Cdd:PRK15429 615 QLS----------LPDITLPEPETPP------------------------------AATVVAQEGED--------EYQLI 646
|
330 340 350
....*....|....*....|....*....|....
gi 491590786 453 SQALEAQGGVVA---RAADMLGMRRTTLVEKMRK 483
Cdd:PRK15429 647 VRVLKETNGVVAgpkGAAQRLGLKRTTLLSRMKR 680
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
137-487 |
2.18e-86 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 273.28 E-value: 2.18e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTG 216
Cdd:PRK10923 140 IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 217 ALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFY 296
Cdd:PRK10923 220 ANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 297 RLNVFPIEMPALKARKQDIPLLLQELMTRLEAE-GGQPICFTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVN 375
Cdd:PRK10923 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARElGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQ 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 376 HLPTKYRYSDIPEFQPEGNPfttvEEQERDVFQdiFSENFSFEEQSDLdhnmnapqalppegvnLKELLADMEVNMISQA 455
Cdd:PRK10923 380 DLPGELFESTVPESTSQMQP----DSWATLLAQ--WADRALRSGHQNL----------------LSEAQPELERTLLTTA 437
|
330 340 350
....*....|....*....|....*....|..
gi 491590786 456 LEAQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:PRK10923 438 LRHTQGHKQEAARLLGWGRNTLTRKLKELGME 469
|
|
| propionate_PrpR |
TIGR02329 |
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists ... |
137-483 |
6.22e-86 |
|
propionate catabolism operon regulatory protein PrpR; At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. [Regulatory functions, DNA interactions]
Pssm-ID: 274079 [Multi-domain] Cd Length: 526 Bit Score: 273.66 E-value: 6.22e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTG 216
Cdd:TIGR02329 214 LLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTG 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 217 ALT-ARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLF 295
Cdd:TIGR02329 294 ARRgGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 296 YRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPicFTPRAI-------NSLMEHNWPGNVRELANLVERMVIlyp 368
Cdd:TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLP--DSEAAAqvlagvaDPLQRYPWPGNVRELRNLVERLAL--- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 369 nslvdvnHLPTkyrysdipefQPEGnpfttveEQERDVFQDIFSENFsfeEQSdldhnmnAPQALPPEGVNLKELLadmE 448
Cdd:TIGR02329 449 -------ELSA----------MPAG-------ALTPDVLRALAPELA---EAS-------GKGKTSALSLRERSRV---E 491
|
330 340 350
....*....|....*....|....*....|....*
gi 491590786 449 VNMISQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
Cdd:TIGR02329 492 ALAVRAALERFGGDRDAAAKALGISRTTLWRRLKA 526
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
150-366 |
1.64e-85 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 270.17 E-value: 1.64e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 150 LIEQ---VSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTGALTARKGRFE 226
Cdd:PRK15115 146 LLEQarmVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 227 LAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNVFPIEMP 306
Cdd:PRK15115 226 AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIP 305
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491590786 307 ALKARKQDIPLLLQELMtRLEAEGGQPIC--FTPRAINSLMEHNWPGNVRELANLVERMVIL 366
Cdd:PRK15115 306 ALAERTEDIPLLANHLL-RQAAERHKPFVraFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
137-488 |
2.78e-85 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 272.36 E-value: 2.78e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNG--------PFVPINCGAIPPELLESELFG 208
Cdd:PRK15424 221 LLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDarqgkkshPFVAVNCGAIAESLLEAELFG 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 209 HEKGAFTGALTA-RKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDD 287
Cdd:PRK15424 301 YEEGAFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 288 GTFREDLFYRLNVFPIEMPALKARKQDIPLLLQELMTRleAEGGQPICFTPRAINSLMEH-------NWPGNVRELANLV 360
Cdd:PRK15424 381 GRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQ--SLAALSAPFSAALRQGLQQCetlllhyDWPGNVRELRNLM 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 361 ERMVIlypnslvdvnHLPTKYRYSDIPEFQPEGNPfttveeqERDVfqdifsenfsfeeqsdlDHNMNAPqalppegvnl 440
Cdd:PRK15424 459 ERLAL----------FLSVEPTPDLTPQFLQLLLP-------ELAR-----------------ESAKTPA---------- 494
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 491590786 441 kellADMEVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNLQR 488
Cdd:PRK15424 495 ----PRLLAATLQQALERFNGDKTAAANYLGISRTTLWRRLKAEAKAQ 538
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
145-487 |
7.32e-80 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 252.08 E-value: 7.32e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 145 QEVRHLIEQVSGTEAnVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESelfghekgaftgaltarkgr 224
Cdd:COG3604 103 EEDLRLLETLASLAA-VAILGETGTGKELVANAIHELSPRADKPFVKVNCAALPESLLES-------------------- 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 225 felaeggtifldeigdmpmsmqvkllrvLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNVFPIE 304
Cdd:COG3604 162 ----------------------------LQEGEFERVGGDETIKVDVRIIAATNRDLEEEVAEGRFREDLYYRLNVFPIR 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 305 MPALKARKQDIPLLLQELMTRLEAEGGQPIC-FTPRAINSLMEHNWPGNVRELANLVERMVILYPNSLVDVNHLPTKyry 383
Cdd:COG3604 214 LPPLRERREDIPLLAEHFLEKFSRRLGKPILrLSPEALEALMAYPWPGNVRELENVIERAVILAEGGVLDADDLAPG--- 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 384 sdipefqpegnPFTTVEEQERDvfqdifsenfsfeeqsdldhnmnapqalppegvnlkelladmevnMISQALEAQGGVV 463
Cdd:COG3604 291 -----------SREALEEVERE---------------------------------------------HILEALERTGGNI 314
|
330 340
....*....|....*....|....
gi 491590786 464 ARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:COG3604 315 AGAARLLGLTPSTLRSRMKKLGIK 338
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
136-487 |
1.35e-79 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 250.74 E-value: 1.35e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 136 SLVGQSRGIQEVrhlIEQVSGT---EANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKG 212
Cdd:PRK11608 7 NLLGEANSFLEV---LEQVSRLaplDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 213 AFTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFRE 292
Cdd:PRK11608 84 AFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 293 DLFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPIC--FTPRAINSLMEHNWPGNVRELANLVERMVilypns 370
Cdd:PRK11608 164 DLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFpgFTERARETLLNYRWPGNIRELKNVVERSV------ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 371 lvdvnhlptkYRYSDipefqpegnpfttVEEQERDVFQDIFSENFSFEEQSdldhnMNAPQALPPEGVNLKELLADMEVN 450
Cdd:PRK11608 238 ----------YRHGT-------------SEYPLDNIIIDPFKRRPAEEAIA-----VSETTSLPTLPLDLREWQHQQEKE 289
|
330 340 350
....*....|....*....|....*....|....*..
gi 491590786 451 MISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:PRK11608 290 LLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKHQIL 326
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
148-392 |
3.22e-64 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 216.48 E-value: 3.22e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 148 RHLIEQ---VSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEKGAFTGALTARKGR 224
Cdd:PRK10820 214 RQVVEQarkLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGF 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 225 FELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNVFPIE 304
Cdd:PRK10820 294 FEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLN 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 305 MPALKARKQDIPLLLQELMTRLEAEGGQP-ICFTPRAINSLMEHNWPGNVRELANLVER-MVILYPNSLvdvnhlptkyR 382
Cdd:PRK10820 374 LPPLRDRPQDIMPLTELFVARFADEQGVPrPKLAADLNTVLTRYGWPGNVRQLKNAIYRaLTQLEGYEL----------R 443
|
250
....*....|..
gi 491590786 383 YSDI--PEFQPE 392
Cdd:PRK10820 444 PQDIllPDYDAA 455
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
134-487 |
5.38e-61 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 210.69 E-value: 5.38e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 134 FRSLVGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGhekGA 213
Cdd:PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLG---SD 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 214 FTGALTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFRED 293
Cdd:PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQ 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 294 LFYRLNVFPIEMPALKARKQDIPLLLQELMTRLEAEGGQPICFTPRAINSLMEHNWPGNVRELANLVERMVIlypNSlvD 373
Cdd:PRK11388 481 LYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLAL---SS--D 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 374 VNHLptkyRYSDIPEfqpegnpfttveeqerdvfqDIFSENfsfeeqsdlDHNMNAPQALPPegvNLKelLADMEVNMIS 453
Cdd:PRK11388 556 NGRI----RLSDLPE--------------------HLFTEQ---------ATDDVSATRLST---SLS--LAELEKEAII 597
|
330 340 350
....*....|....*....|....*....|....
gi 491590786 454 QALEAQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:PRK11388 598 NAAQVCGGRIQEMAALLGIGRTTLWRKMKQHGID 631
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
151-376 |
6.21e-43 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 159.61 E-value: 6.21e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 151 IEQVSG-TEANVLILGESGTGKEVVARNIHYHSAYRN---GPFVPINC------GAIppelleSELFGHEKGAFTGALTA 220
Cdd:COG4650 200 IERVAIrSRAPILLTGPTGAGKSQLARRIYELKKARHqvsGRFVEVNCatlrgdGAM------SALFGHVKGAFTGAVSD 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 221 RKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKVNVRVVAATHRDLETMIDDGTFREDLFYRLNV 300
Cdd:COG4650 274 RAGLLRSADGGVLFLDEIGELGLDEQAMLLRAIEEKRFLPVGSDKEVSSDFQLIAGTNRDLRQEVAEGRFREDLLARINL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 301 FPIEMPALKARKQDIPLLLQELMTRLEAEGGQPICFT-------------PRAInslmehnWPGNVRELANLVERMVILY 367
Cdd:COG4650 354 WTFRLPGLAERREDIEPNLDYELARFAREQGRRVRFNkeararylafatsPEAL-------WSGNFRDLNASVTRMATLA 426
|
....*....
gi 491590786 368 PNSLVDVNH 376
Cdd:COG4650 427 EGGRITVAL 435
|
|
| FleQ |
pfam06490 |
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of ... |
6-114 |
3.30e-36 |
|
Flagellar regulatory protein FleQ; This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Pssm-ID: 428975 [Multi-domain] Cd Length: 108 Bit Score: 129.62 E-value: 3.30e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 6 KLLVIDDDAPSRLNISNILEFVGESCEAVSSDQLGDVDWSSVWSGCIVANISaGQAATAVMTQLNEAYHIPLLVMGSFPL 85
Cdd:pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAISSEDLSAALWSSRWEALAVILGS-VSAAELLKALAKWDPHLPVLLLGETDD 79
|
90 100
....*....|....*....|....*....
gi 491590786 86 PVdDLPNFVGELEQPLNYPQLSEALRHCK 114
Cdd:pfam06490 80 AL-ELANVIGTLEEPLNYPQLTDLLHRCQ 107
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
160-424 |
2.07e-28 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 119.44 E-value: 2.07e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 160 NVLILGESGTGKEVVARNIHYHSAY-----RNGPFVPINCG--AIPPELLESELFGHEKGAFTGALTARKGRFELAEGGT 232
Cdd:COG1221 132 HTLILGPTGVGKSFFAELMYEYAIEigvlpEDAPFVVFNCAdyANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKADGGI 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 233 IFLDEIGDMPMSMQVKLLRVLQERCFERVG-GNTTIKVNVRVVAATHRDLETmiddgTFredlfyrLNVF----P--IEM 305
Cdd:COG1221 212 LFLDEVHRLPPEGQEMLFTFMDKGIYRRLGeTEKTRKANVRIIFATTEDPES-----SL-------LKTFlrriPmvIKL 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 306 PALKARKQD-----IPLLLQELMTRLeaegGQPICFTPRAINSLMEHNWPGNVRELANLV---------ERMVILYPNSL 371
Cdd:COG1221 280 PSLEERSLEerlelIKHFFKEEAKRL----NKPIKVSKEVLKALLLYDCPGNIGQLKSDIqlacakaflNYITNKKEEIE 355
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491590786 372 VDVNHLPTKYR---------------YSDIPE----FQPEGNPFTTVEEQERDV---FQDIFSENFSFEEQSDLD 424
Cdd:COG1221 356 ITLSDLPENVKkgllklkenreeldkLSEYLEeyliISPDTEKKLISEEDEYELpynFYEIIEDKYEELKSEGLS 430
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
138-299 |
1.15e-26 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 105.31 E-value: 1.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 138 VGQSRGIQEVRHLIEQVSGteANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGHEkgaftgA 217
Cdd:cd00009 1 VGQEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF------L 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 218 LTARKGRFELAEGGTIFLDEIGDMPMSMQVKLLRVLQErcferVGGNTTIKVNVRVVAATHRDletmiDDGTFREDLFYR 297
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLET-----LNDLRIDRENVRVIGATNRP-----LLGDLDRALYDR 142
|
..
gi 491590786 298 LN 299
Cdd:cd00009 143 LD 144
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
138-308 |
2.11e-21 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 90.09 E-value: 2.11e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 138 VGQSRGIQEVRHLIEQVSGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESelfghekgaftga 217
Cdd:pfam14532 1 LGASAAIQEIKRRLEQAAQSTLPVFLTGEPGSGKEFCARYLHNPSTPWVQPFDIEYLAHAPLELLEQ------------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 218 ltarkgrfelAEGGTIFLDEIGDMPMSMQVKLLRVLQ--ERCfervggnttikvNVRVVAATHRDLETMIDDGTFREDLF 295
Cdd:pfam14532 68 ----------AKGGTLYLKDIADLSKALQKGLLLLLAkaEGY------------RVRLVCTSSKDLPQLAAAGLFDEQLY 125
|
170
....*....|...
gi 491590786 296 YRLNVFPIEMPAL 308
Cdd:pfam14532 126 FELSALRLHVPPL 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
160-298 |
2.33e-14 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 70.48 E-value: 2.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 160 NVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLES---ELFGHEKGAFTGALTARKgRFELAEG---GTI 233
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQlllIIVGGKKASGSGELRLRL-ALALARKlkpDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491590786 234 FLDEIGDMPMSMQVKLLRVLQErcfERVGGNTTIKVNVRVVAATHR--DLETMIDDGTFREDLFYRL 298
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTNDekDLGPALLRRRFDRRIVLLL 146
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
444-483 |
9.11e-12 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 59.33 E-value: 9.11e-12
10 20 30 40
....*....|....*....|....*....|....*....|
gi 491590786 444 LADMEVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRK 483
Cdd:pfam02954 1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
160-279 |
4.15e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 54.99 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 160 NVLILGESGTGKEVVARniHYHSAYRNGPFVPINCgaiPPELLESELFGH-----EKGAFT-GALTaRKGRfelaEGGTI 233
Cdd:pfam07728 1 GVLLVGPPGTGKTELAE--RLAAALSNRPVFYVQL---TRDTTEEDLFGRrnidpGGASWVdGPLV-RAAR----EGEIA 70
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 491590786 234 FLDEIGDMPMSMQVKLLRVLQERCFERVGGNTTIKV---NVRVVAATHR 279
Cdd:pfam07728 71 VLDEINRANPDVLNSLLSLLDERRLLLPDGGELVKAapdGFRLIATMNP 119
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
137-242 |
3.04e-06 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 47.50 E-value: 3.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491590786 137 LVGQSRGIQEVRHLIEQV-SGTEANVLILGESGTGKEVVARNIHYHSAYRNGPFVPINCGAIPPELLESELFGheKGAFT 215
Cdd:pfam13191 2 LVGREEELEQLLDALDRVrSGRPPSVLLTGEAGTGKTTLLRELLRALERDGGYFLRGKCDENLPYSPLLEALT--REGLL 79
|
90 100
....*....|....*....|....*..
gi 491590786 216 GALTARKGRFELAEGGTIFLDEIGDMP 242
Cdd:pfam13191 80 RQLLDELESSLLEAWRAALLEALAPVP 106
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
443-486 |
6.66e-05 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 41.34 E-value: 6.66e-05
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 491590786 443 LLADMEVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNL 486
Cdd:COG2901 39 VLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
|
| HTH_50 |
pfam18024 |
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription ... |
437-487 |
1.52e-03 |
|
Helix-turn-helix domain; The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins.
Pssm-ID: 407862 [Multi-domain] Cd Length: 50 Bit Score: 36.62 E-value: 1.52e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 491590786 437 GVNLKELLADMEVNMISQALEaQGGVVARAADMLGMRRTTLVEKMRKYNLQ 487
Cdd:pfam18024 1 EMSLKEYVSYIERELIGAAYE-NYKSARKVAKALGLSHTTIANKMKRYGIS 50
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
444-486 |
4.55e-03 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 36.58 E-value: 4.55e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 491590786 444 LADMEVNMISQALEAQGGVVARAADMLGMRRTTLVEKMRKYNL 486
Cdd:PRK00430 52 LAEVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGM 94
|
|
| |
