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Conserved domains on  [gi|491592799|ref|WP_005450364|]
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MULTISPECIES: putative signal transducing protein [Vibrio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2007 super family cl09659
Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic ...
 2-69 3.70e-04

Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic signal transducing proteins of Pii-type.


The actual alignment was detected with superfamily member pfam09413:

Pssm-ID: 471910  Cd Length: 66  Bit Score: 35.66  E-value: 3.70e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491592799    2 KIYIAKNPAEAHIVCELLKTEQIACEVRGEG---MFGLKGELPFSddtdpyVWLlhPEQQL-KASAIVEDYR 69
Cdd:pfam09413   3 ELYRTNDPVLASMIKALLEEAGIPCVIKDEFmsiLEGSLGELPVR------ILV--AEDDLeRARRILREAE 66
 
Name Accession Description Interval E-value
DUF2007 pfam09413
Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic ...
 2-69 3.70e-04

Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic signal transducing proteins of Pii-type.


Pssm-ID: 430595  Cd Length: 66  Bit Score: 35.66  E-value: 3.70e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491592799    2 KIYIAKNPAEAHIVCELLKTEQIACEVRGEG---MFGLKGELPFSddtdpyVWLlhPEQQL-KASAIVEDYR 69
Cdd:pfam09413   3 ELYRTNDPVLASMIKALLEEAGIPCVIKDEFmsiLEGSLGELPVR------ILV--AEDDLeRARRILREAE 66
 
Name Accession Description Interval E-value
DUF2007 pfam09413
Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic ...
 2-69 3.70e-04

Putative prokaryotic signal transducing protein; This is a family of putative prokaryotic signal transducing proteins of Pii-type.


Pssm-ID: 430595  Cd Length: 66  Bit Score: 35.66  E-value: 3.70e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491592799    2 KIYIAKNPAEAHIVCELLKTEQIACEVRGEG---MFGLKGELPFSddtdpyVWLlhPEQQL-KASAIVEDYR 69
Cdd:pfam09413   3 ELYRTNDPVLASMIKALLEEAGIPCVIKDEFmsiLEGSLGELPVR------ILV--AEDDLeRARRILREAE 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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