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Conserved domains on  [gi|491592804|ref|WP_005450369|]
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MULTISPECIES: YciN family protein [Vibrio]

Protein Classification

YciN family protein( domain architecture ID 10013713)

YciN family protein is a DUF2498 domain-containing protein similar to Escherichia coli protein YciN

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11037 PRK11037
hypothetical protein; Provisional
 1-82 5.66e-53

hypothetical protein; Provisional


:

Pssm-ID: 182919  Cd Length: 83  Bit Score: 159.34  E-value: 5.66e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491592804  1 MSDRKHIEEFDLLLIANQIIQEHDDYIEGMRATSVEEKDGVLVFKGEYFLDEKGLPTTNTTAVFNMFKYLAHHLSKEFTL 80
Cdd:PRK11037  2 MKETQPIDRETLLLEANKIIREHEDYLAGMRATDVEQKNGVLVFRGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHL 81


                ..
gi 491592804 81 NK 82
Cdd:PRK11037 82 VD 83
 
Name Accession Description Interval E-value
PRK11037 PRK11037
hypothetical protein; Provisional
 1-82 5.66e-53

hypothetical protein; Provisional


Pssm-ID: 182919  Cd Length: 83  Bit Score: 159.34  E-value: 5.66e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491592804  1 MSDRKHIEEFDLLLIANQIIQEHDDYIEGMRATSVEEKDGVLVFKGEYFLDEKGLPTTNTTAVFNMFKYLAHHLSKEFTL 80
Cdd:PRK11037  2 MKETQPIDRETLLLEANKIIREHEDYLAGMRATDVEQKNGVLVFRGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHL 81


                ..
gi 491592804 81 NK 82
Cdd:PRK11037 82 VD 83
DUF2498 pfam10692
Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many ...
 3-80 6.12e-49

Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many are annotated as like E coli protein YciN. The function is not known.


Pssm-ID: 431439  Cd Length: 79  Bit Score: 149.07  E-value: 6.12e-49
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491592804   3 DRKHIEEFDLLLIANQIIQEHDDYIEGMRATSVEEKDGVLVFKGEYFLDEKGLPTTNTTAVFNMFKYLAHHLSKEFTL 80
Cdd:pfam10692  1 EKKPISREALLLEANKIIQEHEDYLHGMRATSVEQKNGVLVFKGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHL 78
 
Name Accession Description Interval E-value
PRK11037 PRK11037
hypothetical protein; Provisional
 1-82 5.66e-53

hypothetical protein; Provisional


Pssm-ID: 182919  Cd Length: 83  Bit Score: 159.34  E-value: 5.66e-53
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491592804  1 MSDRKHIEEFDLLLIANQIIQEHDDYIEGMRATSVEEKDGVLVFKGEYFLDEKGLPTTNTTAVFNMFKYLAHHLSKEFTL 80
Cdd:PRK11037  2 MKETQPIDRETLLLEANKIIREHEDYLAGMRATDVEQKNGVLVFRGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHL 81


                ..
gi 491592804 81 NK 82
Cdd:PRK11037 82 VD 83
DUF2498 pfam10692
Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many ...
 3-80 6.12e-49

Protein of unknown function (DUF2498); Members of this family are Gammaproteobacteria. Many are annotated as like E coli protein YciN. The function is not known.


Pssm-ID: 431439  Cd Length: 79  Bit Score: 149.07  E-value: 6.12e-49
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491592804   3 DRKHIEEFDLLLIANQIIQEHDDYIEGMRATSVEEKDGVLVFKGEYFLDEKGLPTTNTTAVFNMFKYLAHHLSKEFTL 80
Cdd:pfam10692  1 EKKPISREALLLEANKIIQEHEDYLHGMRATSVEQKNGVLVFKGEYFLDEQGLPTAKTTAVFNMFKHLAHVLSEKYHL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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