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Conserved domains on  [gi|491604733|ref|WP_005462293|]
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MULTISPECIES: flagellar basal body rod protein FlgC [Vibrio]

Protein Classification

flagellar basal body rod protein FlgC( domain architecture ID 11481481)

flagellar basal body rod protein FlgC forms, together with FlgB and FlgF the proximal portion of the central rod at the core of the flagellar organelle's basal body

Gene Ontology:  GO:0071973

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-137 1.28e-67

flagellar basal body rod protein FlgC; Reviewed


:

Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 200.44  E-value: 1.28e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSnamRGGDTVPVKVLGIVESDKPLSAE 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELD---PGQGTGGVKVAKIVEDQSPFKLV 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  81 YNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK05681  78 YDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-137 1.28e-67

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 200.44  E-value: 1.28e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSnamRGGDTVPVKVLGIVESDKPLSAE 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELD---PGQGTGGVKVAKIVEDQSPFKLV 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  81 YNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK05681  78 YDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-137 1.75e-64

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 192.64  E-value: 1.75e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVpvKVLGIVESDKPLSAE 80
Cdd:COG1558    1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEAVLDRAGSGAAGV--RVAGIVEDDSPFRLV 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  81 YNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:COG1558   79 YDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-137 7.00e-62

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 186.02  E-value: 7.00e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733    4 FNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGD-TVPVKVLGIVESDKPLSAEYN 82
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQDRASRPgGSGVKVAKIVEDDSPFKLVYD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 491604733   83 PDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:TIGR01395  81 PTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 92-135 4.25e-11

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 54.96  E-value: 4.25e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 491604733   92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 135
Cdd:pfam06429  31 GYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 1-137 1.28e-67

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 200.44  E-value: 1.28e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSnamRGGDTVPVKVLGIVESDKPLSAE 80
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDGDPYRRKQVVFAAELD---PGQGTGGVKVAKIVEDQSPFKLV 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  81 YNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK05681  78 YDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQ 134
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 1-137 6.25e-66

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 196.33  E-value: 6.25e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVP-VKVLGIVESDKPLSA 79
Cdd:PRK12631   1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEAEMAKAQSQQQASQgVAVKGIVESDKPLLK 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 491604733  80 EYNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK12631  81 EYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
1-137 1.75e-64

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 192.64  E-value: 1.75e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGDTVpvKVLGIVESDKPLSAE 80
Cdd:COG1558    1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDGGPYRRKQVVFEAVLDRAGSGAAGV--RVAGIVEDDSPFRLV 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  81 YNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:COG1558   79 YDPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 4-137 7.00e-62

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 186.02  E-value: 7.00e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733    4 FNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRGGD-TVPVKVLGIVESDKPLSAEYN 82
Cdd:TIGR01395   1 FSIFNVSASALSAQRVRMNVVSSNLANADSTRTPAGDPYRRRRPVFEAELFQDRASRPgGSGVKVAKIVEDDSPFKLVYD 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 491604733   83 PDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:TIGR01395  81 PTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 1-137 1.72e-40

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 131.84  E-value: 1.72e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAM----RGGDTVPVKVLGIVESDKP 76
Cdd:PRK06802   1 MSFNDIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATAYKARSPVFAAVYSARTladpRGVQGAQVQVLDVVQVGGS 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491604733  77 LSaEYNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK06802  81 VK-RYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE 140
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 1-137 3.21e-36

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 120.95  E-value: 3.21e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNamRGGDTVPVKVLGIVESDKPLSAE 80
Cdd:PRK12629   1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQQSR--QDPSLTSVNVKEITTTNAPPIRR 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  81 YNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK12629  79 YEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR 135
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 1-137 3.66e-33

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 113.40  E-value: 3.66e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMRG-GDTVP--VKVLGIVESDKPL 77
Cdd:PRK12628   1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFKSVQENANQWmGEQIKagVKLDGIYESDAEP 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733  78 SAEYNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK12628  81 HRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLGE 140
flgC PRK12630
flagellar basal body rod protein FlgC; Provisional
 1-137 7.39e-32

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183635  Cd Length: 143  Bit Score: 110.31  E-value: 7.39e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAM------RGGDTVPVKVLGIVESD 74
Cdd:PRK12630   1 MKAFDTMRISASGLSAERLRMDTIASNIANATTTRTADGGPYKRKIAVFQENLNKELnkkngaYEKKLYGVKAVGIVEDK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491604733  75 KPLSAEYNPDHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK12630  81 SPFRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAINAEKSMFSKALEIGK 143
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 9-135 3.36e-24

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 90.59  E-value: 3.36e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   9 VTGSAMSAESVRLNTTSSNLANADSVSSSA-KDTYKARHAVFGAELSNAMrGGDTVPVKVLGIVESdkPLSAEYNPDHPL 87
Cdd:PRK12782  11 IASSGLEAQSTRLRVVSENLANAQSTGRTPgADPYARKTVTFRAELDRAA-GAASVRVKEIGVDTA--PFRVEYDPGNPA 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 491604733  88 ANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 135
Cdd:PRK12782  88 ADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDL 135
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 9-128 2.21e-15

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 67.52  E-value: 2.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   9 VTGSAMSAESVRLNTTSSNLANADSVSssakdtYKARHAVFGAElsnAMRGGDTVPVKVLGIVESDKPLSAEYNPDHPLA 88
Cdd:PRK12632  10 VSASGMRAQALRLRHVSENIANADTPG------YRRKTVSFQEA---RDFDPGSGLVSTGPVRLDRSELPRIYDPSHPLA 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 491604733  89 NDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQM 128
Cdd:PRK12632  81 DETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQM 120
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 92-135 4.25e-11

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 54.96  E-value: 4.25e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 491604733   92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 135
Cdd:pfam06429  31 GYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-137 1.97e-10

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 54.91  E-value: 1.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   1 MSLF--NVFNVTGSAMSAESVRLNTTSSNLANADsvsssakdT--YKARHAVFGAELSNAMRGGDTVpvkvLGIVESDK- 75
Cdd:COG1815    1 MSILfdKTFGLLEKALDLRSLRQEVIASNIANAD--------TpgYKARDVDFEAALKAALGGGSAG----LALATTNPr 68

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491604733  76 --PLSAEYNPDHPLANDEGYIYKP---NVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:COG1815   69 hiPGSAGSSVSPEVLYRTPTQPSLdgnTVDLDEEMAKLAENALQYQAALTFLNKKFSMLKTAIKGGR 135
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
92-129 6.79e-08

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 49.43  E-value: 6.79e-08
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 491604733  92 GYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQML 129
Cdd:COG4786  215 GYLEGSNVDVVEEMVDMIEAQRAYEANSKVIQTADEML 252
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 91-129 3.53e-07

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 47.35  E-value: 3.53e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 491604733   91 EGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQML 129
Cdd:TIGR02488 214 QGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQML 252
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 98-129 1.38e-06

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 45.62  E-value: 1.38e-06
                         10        20        30
                 ....*....|....*....|....*....|..
gi 491604733  98 NVNVMEEMANMISASRAYQTNVQVADSSKQML 129
Cdd:PRK12693 223 NVNVVEELVNMITGQRAYEMNSKAISTADQML 254
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 60-116 4.43e-06

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 42.23  E-value: 4.43e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491604733   60 GDTVPVKVLGIVESDKPLSAEYNPD--------HPLANDE------GYIYKPNVNVMEEMANMISASRAYQ 116
Cdd:TIGR02490  19 QDGEEVGRLGLVNFDNPNQLQREGDglfratggGPAPADSnvrvvqGYLEGSNVNAVSEMVDMIEAQRAYE 89
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 91-129 1.38e-04

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 40.18  E-value: 1.38e-04
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 491604733  91 EGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQML 129
Cdd:PRK12816 218 QGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNML 256
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 92-118 2.11e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 39.54  E-value: 2.11e-04
                          10        20
                  ....*....|....*....|....*..
gi 491604733   92 GYIYKPNVNVMEEMANMISASRAYQTN 118
Cdd:TIGR03506 205 GALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bb_rod pfam00460
Flagella basal body rod protein;
7-34 9.61e-04

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 34.85  E-value: 9.61e-04
                          10        20
                  ....*....|....*....|....*...
gi 491604733    7 FNVTGSAMSAESVRLNTTSSNLANADSV 34
Cdd:pfam00460   1 LYTAVSALNAQQIRLDVIANNIANANTP 28
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
98-135 1.14e-03

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 37.46  E-value: 1.14e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 491604733  98 NVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQM 135
Cdd:COG1749  375 NVDLAEELVNMIVAQRAYQANAKVITTSDEMLQTLVNL 412
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 5-67 2.00e-03

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 36.46  E-value: 2.00e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 491604733    5 NVFNVTGSAMSAESVRLNTTSSNLANADSVSssakdtYKARHAVFGAELSNAMRGGDTVPVKV 67
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTG------FKRSRAEFQDLLSQSVSGSGQVGGGV 57
flgB PRK12621
flagellar basal body rod protein FlgB; Provisional
 8-137 2.41e-03

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 171613  Cd Length: 136  Bit Score: 35.88  E-value: 2.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491604733   8 NVTGSAMSAESVRLNTTSSNLANADSVSssakdtYKARHAVFGAELSNA----MRGGDTvpvkvlgiVESDKPLSAEYNP 83
Cdd:PRK12621  10 NLVGKVMDMQLQRQNVVMSNLANVNTPG------YKPRELEFEKELQAAlgldAKGKMT--------RTEKNHLPAVFDP 75

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491604733  84 DHPLAN-DEGyiYKP-------NVNVMEEMANMISASRAYQTNVQVADSSKQMLLRTLQMGQ 137
Cdd:PRK12621  76 EGFEPEwSKA--FKPrvvhgedRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTIIMEGQ 135
flgF PRK12689
flagellar basal-body rod protein FlgF;
91-128 4.95e-03

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 35.49  E-value: 4.95e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 491604733  91 EGYIYKPNVNVMEEMANMISASRAYQtnvQVADSSKQM 128
Cdd:PRK12689 203 QGYIERSNVNPVLEMTRMMEVNRTYT---QVSSMLQQQ 237
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 91-127 6.72e-03

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 35.06  E-value: 6.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 491604733  91 EGYIYKPNVNVMEEMANMISASRAYQTN---VQVADSSKQ 127
Cdd:PRK12818 208 QNSLEKSNVNVTNEMVNMMTTMRSFETNqkiVQSIDETLG 247
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 91-128 9.95e-03

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 34.82  E-value: 9.95e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 491604733  91 EGYIYKPNVNVMEEMANMISASRAYQTNVQVADSSKQM 128
Cdd:PRK12692 216 QGYLEGSNVDPVKEITSLITAQRAFEMNSKVIQAADEM 253
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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