NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|491641515|ref|WP_005499044|]
View 

type VI secretion system lipoprotein TssJ [Vibrio parahaemolyticus]

Protein Classification

type VI secretion lipoprotein TssJ( domain architecture ID 10022385)

type VI secretion lipoprotein TssJ is an outer membrane-associated component that forms the core complex with TssL and TssM inner-membrane proteins

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
VI_chp_3 TIGR03352
type VI secretion lipoprotein, VC_A0113 family; Work by Mougous, et al. (2006), describes ...
 20-148 4.58e-63

type VI secretion lipoprotein, VC_A0113 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


:

Pssm-ID: 274535  Cd Length: 130  Bit Score: 189.38  E-value: 4.58e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   20 SAANLVVDP-YADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKE 98
Cdd:TIGR03352   1 SSAPPPKEPtYVTLTLTAAPDVNPDADGRASPVVVRVYELKSDTKFEAADFFALTEDAKKALGDDLIETDEIILLPGEKR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 491641515   99 IYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSL 148
Cdd:TIGR03352  81 KITITLDEGTRYIGVVAAYRDIDNAEWRVVYKVPPKGKYTIDVMLDAQAI 130
 
Name Accession Description Interval E-value
VI_chp_3 TIGR03352
type VI secretion lipoprotein, VC_A0113 family; Work by Mougous, et al. (2006), describes ...
 20-148 4.58e-63

type VI secretion lipoprotein, VC_A0113 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274535  Cd Length: 130  Bit Score: 189.38  E-value: 4.58e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   20 SAANLVVDP-YADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKE 98
Cdd:TIGR03352   1 SSAPPPKEPtYVTLTLTAAPDVNPDADGRASPVVVRVYELKSDTKFEAADFFALTEDAKKALGDDLIETDEIILLPGEKR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 491641515   99 IYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSL 148
Cdd:TIGR03352  81 KITITLDEGTRYIGVVAAYRDIDNAEWRVVYKVPPKGKYTIDVMLDAQAI 130
COG3521 COG3521
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
 1-151 9.17e-53

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442743  Cd Length: 168  Bit Score: 164.76  E-value: 9.17e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   1 MKQIYKS-----FLLFILLVLMGCSAANLVV------DPYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDF 69
Cdd:COG3521    1 MKKRLKRlarllLLLLLLLLLAGCGSTQKVTvifykqPTTLHLTLTAAPDLNPDANGRPSPVVVRVYQLKDDSAFESADF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515  70 FSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYN-TYQISLEDLSL 148
Cdd:COG3521   81 FALLDDDEEALGADLLSVKELTLLPGESKTLDLPLDPEARYIGVVALFRDPDGARWRLVIPVPELDSDgKLTIELGGNAI 160


                 ...
gi 491641515 149 VVQ 151
Cdd:COG3521  161 TLV 163
T6SS-SciN pfam12790
Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113; One of the virulence mechanisms of ...
 28-145 6.17e-48

Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113; One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.


Pssm-ID: 432786  Cd Length: 120  Bit Score: 150.82  E-value: 6.17e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   28 PYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPK 107
Cdd:pfam12790   1 TTLDLTLVAAADLNPDENGRPSPVVVRVYQLKDDSAFNAADFFSLYDDDKAALGADLVAVDEFILRPGETRTLSLPLDPG 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 491641515  108 TEYLGIVAAFRDIENSNWRQVIKVDKTG-YNTYQISLED 145
Cdd:pfam12790  81 ARYVGVVAAYRDLDNARWRLVIPIPEAGeKNPLTVELDA 119
 
Name Accession Description Interval E-value
VI_chp_3 TIGR03352
type VI secretion lipoprotein, VC_A0113 family; Work by Mougous, et al. (2006), describes ...
 20-148 4.58e-63

type VI secretion lipoprotein, VC_A0113 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274535  Cd Length: 130  Bit Score: 189.38  E-value: 4.58e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   20 SAANLVVDP-YADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKE 98
Cdd:TIGR03352   1 SSAPPPKEPtYVTLTLTAAPDVNPDADGRASPVVVRVYELKSDTKFEAADFFALTEDAKKALGDDLIETDEIILLPGEKR 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 491641515   99 IYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYNTYQISLEDLSL 148
Cdd:TIGR03352  81 KITITLDEGTRYIGVVAAYRDIDNAEWRVVYKVPPKGKYTIDVMLDAQAI 130
COG3521 COG3521
Predicted component of the type VI protein secretion system [Intracellular trafficking, ...
 1-151 9.17e-53

Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442743  Cd Length: 168  Bit Score: 164.76  E-value: 9.17e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   1 MKQIYKS-----FLLFILLVLMGCSAANLVV------DPYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDF 69
Cdd:COG3521    1 MKKRLKRlarllLLLLLLLLLAGCGSTQKVTvifykqPTTLHLTLTAAPDLNPDANGRPSPVVVRVYQLKDDSAFESADF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515  70 FSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPKTEYLGIVAAFRDIENSNWRQVIKVDKTGYN-TYQISLEDLSL 148
Cdd:COG3521   81 FALLDDDEEALGADLLSVKELTLLPGESKTLDLPLDPEARYIGVVALFRDPDGARWRLVIPVPELDSDgKLTIELGGNAI 160


                 ...
gi 491641515 149 VVQ 151
Cdd:COG3521  161 TLV 163
T6SS-SciN pfam12790
Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113; One of the virulence mechanisms of ...
 28-145 6.17e-48

Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113; One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.


Pssm-ID: 432786  Cd Length: 120  Bit Score: 150.82  E-value: 6.17e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491641515   28 PYADLEITANHNINPDSNGRPSPVVVYVFELTSNTLFESQDFFSIYEEHEKVLGPDLVNKYEISLTPGQKEIYQASMSPK 107
Cdd:pfam12790   1 TTLDLTLVAAADLNPDENGRPSPVVVRVYQLKDDSAFNAADFFSLYDDDKAALGADLVAVDEFILRPGETRTLSLPLDPG 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 491641515  108 TEYLGIVAAFRDIENSNWRQVIKVDKTG-YNTYQISLED 145
Cdd:pfam12790  81 ARYVGVVAAYRDLDNARWRLVIPIPEAGeKNPLTVELDA 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH