|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
9-524 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 977.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 9 AMTAPEASLPSSKKVFIKWSLLGTVGILNGYATILMYSRGEIAFALLTIILTALALFIFGSKKTYAHRYIYPGIAGMILF 88
Cdd:PRK10999 2 AMMDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 89 ILFPLAYTIGLAFTNYSAKNQLSFDRAQSVLLDRTYQSGDSYPFTLYNTEQGHQIVVEKD--GELLATPVFQLQGFSETD 166
Cdd:PRK10999 82 VLFPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGetGKNYLSEPFSLEAGGEQK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 167 LDLAPITEA-AGDKEPIKTIVKNRTALSSVDLHLPNGDDIRMSGLRKFAAVVPLYTLQEDGETLYNNRTQETLRPNMEVG 245
Cdd:PRK10999 162 LQLKETDALpEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGTTLTNNQSGVKYRPNNDIG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 246 YYQPVDENGQFVGSTVSPGFVVNIGTHNFERVWKDDGIKEPFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRS 325
Cdd:PRK10999 242 FYQSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 326 IYRLLLILPYAVPAFISILIFKGLFNQSFGEINMLLEGLFGISPAWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAI 405
Cdd:PRK10999 322 VYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAI 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 406 PDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGPNMIGTSEPAGYTDLLVSYTYRIA 485
Cdd:PRK10999 402 PDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIA 481
|
490 500 510
....*....|....*....|....*....|....*....
gi 491642140 486 FEGAGGQDFGLASAVATLIFLLVGALALINLRVTKVAQD 524
Cdd:PRK10999 482 FEGGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
110-270 |
3.74e-88 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 267.97 E-value: 3.74e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 110 LSFDRAQSVLLDRTYQSGDSYPFTLYNTEQGHQIVVEK--DGELLATPVFQLQGFSETDLDLAPITEA-AGDKEPIKTIV 186
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDgeSGQLLVSEPFTLDGAGEQKLALEPAESLpTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 187 KNRTALSSVDLHLPNGDDIRMSGLRKFAAVVPLYTLQEDGETLYNNRTQETLRPNMEVGYYQPVDENGQFVGSTVSPGFV 266
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGETLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 491642140 267 VNIG 270
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
269-520 |
4.17e-61 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 202.67 E-value: 4.17e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 269 IGTHNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVqWEALKGRSIYRLLLILPYAVPAFISILIFKG 348
Cdd:COG1175 60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 349 LFNQSFGEINMLLEGLFGISPAWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRIT 428
Cdd:COG1175 135 LFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRIT 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 429 MPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGpnmigtsePAGYTDLLVSYTYRIAFEgagGQDFGLASAVATLIFLLV 508
Cdd:COG1175 215 LPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLII 283
|
250
....*....|..
gi 491642140 509 GALALINLRVTK 520
Cdd:COG1175 284 LVLTLLQLRLLR 295
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
291-508 |
1.35e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 80.79 E-value: 1.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 291 FIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKGLFNQSFGeinmlleglfgispa 370
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 371 WFSDPFMAKTMILIVNTWLgFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNN 450
Cdd:cd06261 66 WGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 491642140 451 FVLIQLLTGGGPNMIGTsepagytdllvsYTYRIAFEGAGGqDFGLASAVATLIFLLV 508
Cdd:cd06261 145 FALVSFLGGGEAPGPGT------------GLLLIFAILFPG-DLGVAAAVALILLLLS 189
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
269-511 |
1.07e-05 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 48.14 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 269 IGTHNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKG 348
Cdd:TIGR03262 38 IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIY 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 349 LF-NQSfgeinmLLEGLFGISPAWfsdpfmAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRI 427
Cdd:TIGR03262 114 LFgNQG------LLKGLLGGFSIY------GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 428 TMPMMLKPLTPLLIASFAFNFNNFvliqlltgGGPNMIGTSEPAGYTDLlvsYTYRIafegaGGQDFGLASAVATLifLL 507
Cdd:TIGR03262 182 TLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGVL--LL 243
|
....
gi 491642140 508 VGAL 511
Cdd:TIGR03262 244 LPAL 247
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
9-524 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 977.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 9 AMTAPEASLPSSKKVFIKWSLLGTVGILNGYATILMYSRGEIAFALLTIILTALALFIFGSKKTYAHRYIYPGIAGMILF 88
Cdd:PRK10999 2 AMMDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 89 ILFPLAYTIGLAFTNYSAKNQLSFDRAQSVLLDRTYQSGDSYPFTLYNTEQGHQIVVEKD--GELLATPVFQLQGFSETD 166
Cdd:PRK10999 82 VLFPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGetGKNYLSEPFSLEAGGEQK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 167 LDLAPITEA-AGDKEPIKTIVKNRTALSSVDLHLPNGDDIRMSGLRKFAAVVPLYTLQEDGETLYNNRTQETLRPNMEVG 245
Cdd:PRK10999 162 LQLKETDALpEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGTTLTNNQSGVKYRPNNDIG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 246 YYQPVDENGQFVGSTVSPGFVVNIGTHNFERVWKDDGIKEPFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRS 325
Cdd:PRK10999 242 FYQSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKA 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 326 IYRLLLILPYAVPAFISILIFKGLFNQSFGEINMLLEGLFGISPAWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAI 405
Cdd:PRK10999 322 VYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAI 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 406 PDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGPNMIGTSEPAGYTDLLVSYTYRIA 485
Cdd:PRK10999 402 PDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIA 481
|
490 500 510
....*....|....*....|....*....|....*....
gi 491642140 486 FEGAGGQDFGLASAVATLIFLLVGALALINLRVTKVAQD 524
Cdd:PRK10999 482 FEGGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
110-270 |
3.74e-88 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 267.97 E-value: 3.74e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 110 LSFDRAQSVLLDRTYQSGDSYPFTLYNTEQGHQIVVEK--DGELLATPVFQLQGFSETDLDLAPITEA-AGDKEPIKTIV 186
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDgeSGQLLVSEPFTLDGAGEQKLALEPAESLpTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 187 KNRTALSSVDLHLPNGDDIRMSGLRKFAAVVPLYTLQEDGETLYNNRTQETLRPNMEVGYYQPVDENGQFVGSTVSPGFV 266
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGETLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 491642140 267 VNIG 270
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
269-520 |
4.17e-61 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 202.67 E-value: 4.17e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 269 IGTHNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVqWEALKGRSIYRLLLILPYAVPAFISILIFKG 348
Cdd:COG1175 60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 349 LFNQSFGEINMLLEGLFGISPAWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRIT 428
Cdd:COG1175 135 LFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRIT 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 429 MPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGpnmigtsePAGYTDLLVSYTYRIAFEgagGQDFGLASAVATLIFLLV 508
Cdd:COG1175 215 LPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLII 283
|
250
....*....|..
gi 491642140 509 GALALINLRVTK 520
Cdd:COG1175 284 LVLTLLQLRLLR 295
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
270-520 |
3.80e-22 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 99.85 E-value: 3.80e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 270 GTHNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKGL 349
Cdd:COG1178 39 GLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIAL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 350 FNQSfGEINMLLEGLFGISPAWFSDPFMaktmILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITM 429
Cdd:COG1178 115 FGPN-GLLNTLLRALFGLEPPDIYGLGG----IILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 430 PMMLKPLTPLLIASFAFNFNNFvliqlltgGGPNMIGTsepaGYTDLlvsyTYRIAFEGAGGQDFGLASAVATLIFLLVG 509
Cdd:COG1178 190 PLLRPAIAAGALLVFLLCLADF--------GTPLVLGG----GYTTL----TTAIYQAWLGDFDLGAAAALALVLLLLVL 253
|
250
....*....|.
gi 491642140 510 ALALINLRVTK 520
Cdd:COG1178 254 LLLLLERRLRR 264
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
269-517 |
1.10e-21 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 94.89 E-value: 1.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 269 IGTHNFERVWKDDgikePFISIFIWTIVFSALTVVCTLVIGLVLASVVQWeALKGRSIYRLLLILPYAVPAFISILIFKG 348
Cdd:PRK10561 39 VGLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWIF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 349 LFNQSFGEINMLLEGlFGISpaWFSDPFMAKTMILIV--NTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTR 426
Cdd:PRK10561 114 LFNPGRGLITHFLAE-FGYD--WNHAQNSGQAMFLVVfaSVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 427 ITMPMMLKPLTPLLIAS--FAFnFNNFVLIQLLTGGGPNMIGTsepagytdllvSYTYRIAFEGAGGQDFGLASAVATLI 504
Cdd:PRK10561 191 LALPLIAPVSFFLLVVNlvYAF-FDTFPVIDAATSGGPVQATT-----------TLIYKIYREGFTGLDLSSSAAQSVVL 258
|
250
....*....|...
gi 491642140 505 FLLVGALALINLR 517
Cdd:PRK10561 259 MFLVIVLTVVQFR 271
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
273-520 |
2.58e-20 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 90.98 E-value: 2.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 273 NFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVP------AFISILIF 346
Cdd:COG1176 55 NYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSflvrtyAWIVLLGR 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 347 KGLFNQSFGEINmLLEGLFGISPAWFSdpfmaktmILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTR 426
Cdd:COG1176 131 NGLLNSLLLALG-LIDEPLRLLYTEFA--------VVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 427 ITMPMMLKPLTPLLIASFAFNFNNFVLIQLLTGGGPNMIGTsepagytdllvsytyRIAFEGAGGQDFGLASAVATLIFL 506
Cdd:COG1176 202 VILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGN---------------LIYQQFLSALNWPLAAALAVVLLL 266
|
250
....*....|....
gi 491642140 507 LVGALALINLRVTK 520
Cdd:COG1176 267 IVLLVLLLYLRLLR 280
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
271-520 |
2.34e-18 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 84.78 E-value: 2.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 271 THNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFI---SILIFk 347
Cdd:COG1177 47 LRWYAELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVlgvALLLL- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 348 glFNQsfgeinmlleglFGISPAWFSdpfmaktmILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRI 427
Cdd:COG1177 122 --FSA------------LGLSGGLWG--------LILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRV 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 428 TMPMMLkpltPLLIA----SFAFNFNNFVLIQLLTGGGPNMIGTSepagytdLLVSYTYRIAFEgaggqdfglASAVATL 503
Cdd:COG1177 180 TLPLIA----PGILAgallAFTLSFDEFVITLFLAGPGVTTLPVY-------IYSMIRRGISPE---------INALSTL 239
|
250
....*....|....*..
gi 491642140 504 IFLLVGALALINLRVTK 520
Cdd:COG1177 240 LILLSLLLLLLAERLRR 256
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
291-508 |
1.35e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 80.79 E-value: 1.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 291 FIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKGLFNQSFGeinmlleglfgispa 370
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 371 WFSDPFMAKTMILIVNTWLgFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNN 450
Cdd:cd06261 66 WGILPGLGLPALILALLLI-APFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 491642140 451 FVLIQLLTGGGPNMIGTsepagytdllvsYTYRIAFEGAGGqDFGLASAVATLIFLLV 508
Cdd:cd06261 145 FALVSFLGGGEAPGPGT------------GLLLIFAILFPG-DLGVAAAVALILLLLS 189
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
269-500 |
1.00e-14 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 75.13 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 269 IGTHNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLA---SVVQWEALKgrSIYRLLLILPYavpaFISIL- 344
Cdd:COG4209 70 VGLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILAlllNELRSKRFK--KTVQTISYLPH----FLSWVv 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 345 ---IFKGLFNQSFGEINMLLEgLFGISP-AWFSDPFMAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANF 420
Cdd:COG4209 140 vagIVYQFLSPDTGLVNQLLR-ALGGEPiNFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGR 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 421 ITNFTRITMPMMLKPLTPLLIASFAFNFN-NFVLIQLLtGGGPNMigtsepaGYTDLLVSYTYRIafeGAGGQDFGLASA 499
Cdd:COG4209 219 WQQIWHITLPGIRPTIVILLILNIGNILNvGFEQIYLL-YNPLNY-------STSDVIDTYVYRI---GLQNGDYSYATA 287
|
.
gi 491642140 500 V 500
Cdd:COG4209 288 V 288
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
254-520 |
2.20e-12 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 69.42 E-value: 2.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 254 GQFVGSTVSPGFVVNIGTHNFERVWKDDGIKEPFISifiwTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLIL 333
Cdd:COG1178 307 LALLLWSLTKALDDNLTLDNYRFVLLDPSLLRALLN----SLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAML 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 334 PYAVPAF---ISILIFkglFNQSFGeinmlleglFGISPAWFsdpfmaktMILIVNTWLGFPYMMILCMGLLKAIPDDLY 410
Cdd:COG1178 383 PYAVPGIvlgLGLLLL---FNRPLP---------LLLYGTLA--------ILVLAYVVRFLPFALRSLEAALAQIDPSLE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 411 EASAIDGANFITNFTRITMPMMLKPltplLIASFAFNF----NNFVLIQLLTGGGpnmigtsepagyTDLLVSYTYRiaF 486
Cdd:COG1178 443 EAARSLGASPLRTLRRVTLPLLRPG----LLAAALLVFvtsmKELSATLLLRPPG------------FETLAVLIYQ--L 504
|
250 260 270
....*....|....*....|....*....|....
gi 491642140 487 EGAGgqDFGLASAVATLIFLLVGALALINLRVTK 520
Cdd:COG1178 505 ASSG--RYGEAAALALLLVLVSLLPVLLLERLLG 536
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
306-520 |
2.68e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 59.62 E-value: 2.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 306 LVIGLVLASVVQWealKGRSIYRLLLILPYAVPAFISILIFkglfnqsfgeinmlleglfgISPAWFSDPFMAKTMILIV 385
Cdd:pfam00528 2 IPLGIIAALRRGR---RLDRLLRPLIDLLQALPSFVLAILL--------------------VVIAILSILGHGILPAIIL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 386 NTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITMPMMLKPLTPLLIASFAFNFNNFVLIQlltgggpnMI 465
Cdd:pfam00528 59 ALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLE--------FL 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 491642140 466 GTSEPAGYTDLLVSYTYRIAFEGAGGqdFGLASAVATLIFLLVGALALINLRVTK 520
Cdd:pfam00528 131 GSWPGLGLLLIEAILGYDYPEIQGPV--LAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
273-506 |
2.21e-09 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 58.57 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 273 NFERVWKDDgikePFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPaFISILIfkGLFnQ 352
Cdd:COG0395 62 NYRAAFTDG----PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIP-GQVLLI--PLY-L 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 353 SFGEINMLleglfgispawfsDPFMAktmILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRITMPMM 432
Cdd:COG0395 134 LFRQLGLL-------------NTYWG---LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLS 197
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491642140 433 LKPLTPLLIASFAFNFNNFVLiqlltgggPNMIgTSEPAGYTdllvsYTYRIA-FEGAGGQDFGLASAVATLIFL 506
Cdd:COG0395 198 KPALATVAIFTFIGAWNDFLW--------PLIL-LTSPDLRT-----LPVGLAsFQGQYGTDWGLLMAAAVIATL 258
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
269-511 |
1.07e-05 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 48.14 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 269 IGTHNFERVWKDDGikepFISIFIWTIVFSALTVVCTLVIGLVLASVVQWEALKGRSIYRLLLILPYAVPAFISILIFKG 348
Cdd:TIGR03262 38 IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIY 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 349 LF-NQSfgeinmLLEGLFGISPAWfsdpfmAKTMILIVNTWLGFPYMMILCMGLLKAIPDDLYEASAIDGANFITNFTRI 427
Cdd:TIGR03262 114 LFgNQG------LLKGLLGGFSIY------GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTV 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491642140 428 TMPMMLKPLTPLLIASFAFNFNNFvliqlltgGGPNMIGTSEPAGYTDLlvsYTYRIafegaGGQDFGLASAVATLifLL 507
Cdd:TIGR03262 182 TLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGVL--LL 243
|
....
gi 491642140 508 VGAL 511
Cdd:TIGR03262 244 LPAL 247
|
|
| |
