|
Name |
Accession |
Description |
Interval |
E-value |
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2-1469 |
0e+00 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 2377.33 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 2 TQRGKFQSLTMVNWNGFFARTFDIDNLVTTLSGGNGAGKSTTMAAFITAMIPDQSLLHFRNTTEAGSSSASRDKGLHGKL 81
Cdd:COG3096 1 IERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 82 KPGACYAALDVVNSRNQRILFGVRLQQVAGRDKKVDIKPFIVQGLPSGVKPTDILIENVSANQVRVRQLNEVKDALADYD 161
Cdd:COG3096 81 KPGVCYAALDVVNSRGQRLLVGVRLQQVAGRDKKVDIKPFIIQGLPEDVKPTDLLTETLDGRQARVLPLNELKEKAEELE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 162 TAHFKAFSSVTDYHAQMFEFGALPKKLRNSSDRSKFYRLIEASLYGGISSAITKSLRDYLLPQNGGVKKAFQDMEVALRE 241
Cdd:COG3096 161 GVQFKQFNSITDYHAFMFDLGVTPKRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 242 NRMTLEAIKLTQRDRDLFKHLITESTNYVASDYMRHANERRKKLELALQRRGELLGSRRQLDDFQATFGRMTDELDALTE 321
Cdd:COG3096 241 NRMTLEAIRVTQSDRDLFKHLITEATNYVAADYMRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 322 SQTHLEQDYQAASDHLQLVQTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLAD 401
Cdd:COG3096 321 RESDLEQDYQAASDHLNLVQTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 402 YQQALDMQQTRALQYQQAVKALEKARELTGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLEL 481
Cdd:COG3096 401 YQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYEL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 482 VRSIAGEVSRSDAGEKAREVIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMA 561
Cdd:COG3096 481 VCKIAGEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 562 RQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADER 641
Cdd:COG3096 561 ELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLERER 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 642 ETITTRDKLQAEKQALEAEIERLAQPGGSDDARLQSLADTLGGTLLSEIYDDITLDDAPYFSALYGPARHAIVVPDLKGI 721
Cdd:COG3096 641 EATVERDELAARKQALESQIERLSQPGGAEDPRLLALAERLGGVLLSEIYDDVTLEDAPYFSALYGPARHAIVVPDLSAV 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 722 KDKLLDLDDCPEDLYIIEGDADGFDDSVFDVEELEDAVCVHLNDRQLRYSRFPKIPLFGRAAREHRLETLREKREELVEN 801
Cdd:COG3096 721 KEQLAGLEDCPEDLYLIEGDPDSFDDSVFDAEELEDAVVVKLSDRQWRYSRFPEVPLFGRAAREKRLEELRAERDELAEQ 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 802 YAKASFDAQKLQRLTQSFNQFVSNHMNVAFNEDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKLQ 881
Cdd:COG3096 801 YAKASFDVQKLQRLHQAFSQFVGGHLAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 882 HVVNALEDDTLEARLEEVEARLSQADEARHFTREHGKALAELENLVSTLDADPEQFDALSAAYLQADETLQTLKKTLFAL 961
Cdd:COG3096 881 PQANLLADETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFAL 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 962 SDLVERRHHFGYADAVALLDKSSELNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKR 1041
Cdd:COG3096 961 SEVVQRRPHFSYEDAVGLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1042 ELAELGVRADVEAEERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAKAGWMDV 1121
Cdd:COG3096 1041 ELEELGVQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAGWCAV 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1122 LKIARSSNVEKQLNRREMAYMSAEELRSLSDKSLGALRLAVADNETLRDALRASEDIARPERKVLFYVAVYQHLRERIRH 1201
Cdd:COG3096 1121 LRLARDNDVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDALRLSEDPRRPERKVQFYIAVYQHLRERIRQ 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1202 DIIRTDDPVEAIEEMEVELARLTEELTQREKRLAISSESVANIIRKTIQREQNRIRLLNQGLSNIAFGQVKGVRLNVSIR 1281
Cdd:COG3096 1201 DIIRTDDPVEAIEQMEIELARLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNVSFGQVKGVRLNVNIR 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1282 ETHAQLLEGLAEKAEQHQDLFGNNRLTFSEAMAKLFQRLNPHIDLGQRSPQVLGEELLDYRNYLELGIEVNRGTDGWLQA 1361
Cdd:COG3096 1281 ETHAQLLDALSEQQEQHQDLFFSNRLTFSEALAKLYQRLNPHIDMGQRSPQTIGEELLDYRNYLELEVEVNRGADGWLRA 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1362 ESGALSTGEAIGTGQAILLMVVQSWEEESRRLRGKDVIPCRLLFLDEAARLDAKSISTLFELCHRLDMQLLIAAPENISP 1441
Cdd:COG3096 1361 ESGALSTGEAIGTGMSILLMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENISP 1440
|
1450 1460
....*....|....*....|....*...
gi 491647617 1442 EQGTTYKLVRKIFNDKEHVHVVGLRGFG 1469
Cdd:COG3096 1441 EKGTTYKLVRKVFNNQEHVHVVGLRGFG 1468
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1-1486 |
0e+00 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 2180.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1 MTQRGKFQSLTMVNWNGFFARTFDIDNLVTTLSGGNGAGKSTTMAAFITAMIPDQSLLHFRNTTEAGSSSASRDKGLHGK 80
Cdd:PRK04863 1 MIERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 81 LKPGACYAALDVVNSRNQRILFGVRLQQVAGRDKKVDIKPFIVQGLPSGVKPTDILIENVSANQVRVRQLNEVKDALADY 160
Cdd:PRK04863 81 LKAGVCYAALDVVNSRGQRVLVGVRLQQVAGRDRKVDIKPFAIQGLPDSVQPTDLLTETVNERQARVLTLNELKDKAAAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 161 DTAHFKAFSSVTDYHAQMFEFGALPKKLRNSSDRSKFYRLIEASLYGGISSAITKSLRDYLLPQNGGVKKAFQDMEVALR 240
Cdd:PRK04863 161 EGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 241 ENRMTLEAIKLTQRDRDLFKHLITESTNYVASDYMRHANERRKKLELALQRRGELLGSRRQLDDFQATFGRMTDELDALT 320
Cdd:PRK04863 241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELN 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 321 ESQTHLEQDYQAASDHLQLVQTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLA 400
Cdd:PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 401 DYQQALDMQQTRALQYQQAVKALEKARELTGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLE 480
Cdd:PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 481 LVRSIAGEVSRSDAGEKAREVIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEM 560
Cdd:PRK04863 481 LVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 561 ARQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADE 640
Cdd:PRK04863 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 641 RETITTRDKLQAEKQALEAEIERLAQPGGSDDARLQSLADTLGGTLLSEIYDDITLDDAPYFSALYGPARHAIVVPDLKG 720
Cdd:PRK04863 641 RELTVERDELAARKQALDEEIERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVSLEDAPYFSALYGPARHAIVVPDLSD 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 721 IKDKLLDLDDCPEDLYIIEGDADGFDDSVFDVEELEDAVCVHLNDRQLRYSRFPKIPLFGRAAREHRLETLREKREELVE 800
Cdd:PRK04863 721 AAEQLAGLEDCPEDLYLIEGDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAE 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 801 NYAKASFDAQKLQRLTQSFNQFVSNHMNVAFNEDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKL 880
Cdd:PRK04863 801 RYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 881 QHVVNALEDDTLEARLEEVEARLSQADEARHFTREHGKALAELENLVSTLDADPEQFDALSAAYLQADETLQTLKKTLFA 960
Cdd:PRK04863 881 LPRLNLLADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFA 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 961 LSDLVERRHHFGYADAVALLDKSSELNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFK 1040
Cdd:PRK04863 961 LTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELK 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1041 RELAELGVRADVEAEERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAKAGWMD 1120
Cdd:PRK04863 1041 QELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1121 VLKIARSSNVEKQLNRREMAYMSAEELRSLSDKSLGALRLAVADNETLRDALRASEDIARPERKVLFYVAVYQHLRERIR 1200
Cdd:PRK04863 1121 VLRLVKDNGVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKVQFYIAVYQHLRERIR 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1201 HDIIRTDDPVEAIEEMEVELARLTEELTQREKRLAISSESVANIIRKTIQREQNRIRLLNQGLSNIAFGQVKGVRLNVSI 1280
Cdd:PRK04863 1201 QDIIRTDDPVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQVKSVRLNVNV 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1281 RETHAQLLEGLAEKAEQHQDLFGNNRLTFSEAMAKLFQRLNPHIDLGQRSPQVLGEELLDYRNYLELGIEVNRGTDGWLQ 1360
Cdd:PRK04863 1281 RETHAMLLDALSEQQEQHQDLFNSARLTFSEALAKLYQRLNPHIDMGQRTPQTIGEELLDYRNYLELEVEVNRGADGWLR 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1361 AESGALSTGEAIGTGQAILLMVVQSWEEESRRLRGKDVIPCRLLFLDEAARLDAKSISTLFELCHRLDMQLLIAAPENIS 1440
Cdd:PRK04863 1361 AESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLDMQLLIAAPENIS 1440
|
1450 1460 1470 1480
....*....|....*....|....*....|....*....|....*.
gi 491647617 1441 PEQGTTYKLVRKIFNDKEHVHVVGLRGFGDMAKTSSPIQESLEIAE 1486
Cdd:PRK04863 1441 PEKGTTYKLVRKVFNNREHVHVVGLRGFAQLLPDTLPGQDEAESGA 1486
|
|
| MukB |
pfam04310 |
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of ... |
2-227 |
2.45e-132 |
|
MukB N-terminal; This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Pssm-ID: 427856 [Multi-domain] Cd Length: 226 Bit Score: 408.02 E-value: 2.45e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 2 TQRGKFQSLTMVNWNGFFARTFDIDNLVTTLSGGNGAGKSTTMAAFITAMIPDQSLLHFRNTTEAGSSSASRDKGLHGKL 81
Cdd:pfam04310 1 IERGKFQSLTMINWNGFFARTFDLDQLVTTLSGGNGAGKSTTMAAFITALIPDLSLLHFRNTTEAGSTSGSRDKGLYGKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 82 KPGACYAALDVVNSRNQRILFGVRLQQVAGRDKKVDIKPFIVQGLPSGVKPTDILIENVSANQVRVRQLNEVKDALADYD 161
Cdd:pfam04310 81 QAGHCYSAIDVANSRGQRLWFGVHLQQVAGRDRKVDITPFAIQGLPEDVQPTDVLLERLDDGHARVRSLNELKDAAAELG 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491647617 162 TAHFKAFSSVTDYHAQMFEFGALPKKLRNSSDRSKFYRLIEASLYGGISSAITKSLRDYLLPQNGG 227
Cdd:pfam04310 161 GARFKQFNSITDYHNFMFDMGVTPKKLRDQRDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSG 226
|
|
| MukB_hinge |
pfam16330 |
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for ... |
646-811 |
4.43e-77 |
|
MukB hinge domain; The hinge domain of chromosome partition protein MukB is responsible for dimerization and is also involved in protein-DNA interactions and conformational flexibility.
Pssm-ID: 435281 [Multi-domain] Cd Length: 167 Bit Score: 252.26 E-value: 4.43e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 646 TRDKLQAEKQALEAEIERLAQPGGSDDARLQSLADTLGGTLLSEIYDDITLDDAPYFSALYGPARHAIVVPDLKGIKDKL 725
Cdd:pfam16330 2 ERDELAARKERLEKEIERLLQPGGSEDPRLPRLAERLGGVLLSEIYDDISLEDAPYFSALYGPARHAIVVPDLSDAADKL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 726 LDLDDCPEDLYIIEGDADGFDDSVFDVEELEDAVCVHLNDRQLRYSRFPKIPLFGRAAREHRLETLREKREELVENYAKA 805
Cdd:pfam16330 82 NGLEDCPDDLYLIEGDPDSFDESAFSAEELEDAVLVHDSDRQLRYSRFPEVPLFGRAAREKRLEALRAEREELAERYAKL 161
|
....*.
gi 491647617 806 SFDAQK 811
Cdd:pfam16330 162 AFDVQK 167
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
345-1100 |
2.32e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 98.21 E-value: 2.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 345 RQQEKVERYQE---------------DLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQ 409
Cdd:TIGR02168 207 RQAEKAERYKElkaelrelelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 410 QTRALQYQQAVKALEK----ARELTGNDALSQENAAEYLASLKAKED-------AQTSELLSLKHKLDLSSAAAKQFERG 478
Cdd:TIGR02168 287 QKELYALANEISRLEQqkqiLRERLANLERQLEELEAQLEELESKLDelaeelaELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 479 LELVRSIAGEVsRSDAGEKAREVIAKGREFANLAANAEQLTSQHRDLE-RQMRSLQQAKTLSEQYQR-QFNETVTSEEAV 556
Cdd:TIGR02168 367 LEELESRLEEL-EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEdRRERLQQEIEELLKKLEEaELKELQAELEEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 557 ELEMARQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEqTGEELYDSQAVLDTMQRV 636
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE-GVKALLKNQSGLSGILGV 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 637 MADereTITTRDKLQAekqALEAEI-ERLAQP--GGSDDARL--QSLADTLGGTLLSEIYDDITLDDApyfsalygPARH 711
Cdd:TIGR02168 525 LSE---LISVDEGYEA---AIEAALgGRLQAVvvENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEI--------QGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 712 AIVVPDLKGIKDKLLDLDDCPEDLyiiEGDADGFDDSVFDVEELEDAvcvhLNDRQLRYSRFPKIPLFG----------R 781
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKFDPKL---RKALSYLLGGVLVVDDLDNA----LELAKKLRPGYRIVTLDGdlvrpggvitG 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 782 AAREHRLETLrEKREELVENyakasfdAQKLQRLTQSFnqfvsnhmnvafnEDPEAALKDLREQRSNVQRQLAQLRESEQ 861
Cdd:TIGR02168 664 GSAKTNSSIL-ERRREIEEL-------EEKIEELEEKI-------------AELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 862 QVRSQLTGAKEAIALLNKLQHVVnALEDDTLEARLEEVEARLSQADEARHFTREHGKAL-AELENLVSTLDADPEQFDAL 940
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQL-EERIAQLSKELTELEAEIEELEERLEEAEEELAEAeAEIEELEAQIEQLKEELKAL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 941 SAAYLQADETLQTLKKtlfALSDLVERRhhfgyadavalldksselnEQLKAKLVDAERARTRSREQVKQVREQvnqynq 1020
Cdd:TIGR02168 802 REALDELRAELTLLNE---EAANLRERL-------------------ESLERRIAATERRLEDLEEQIEELSED------ 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1021 vLISLKSSHQAKQETVAEFKRELAELGVRADVEAEERARIR--RDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLK 1098
Cdd:TIGR02168 854 -IESLAAEIEELEELIEELESELEALLNERASLEEALALLRseLEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
..
gi 491647617 1099 KA 1100
Cdd:TIGR02168 933 GL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
330-910 |
1.14e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 1.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 330 YQAASDHLQLVQTAVRQQeKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQ 409
Cdd:COG1196 215 YRELKEELKELEAELLLL-KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 410 QTRALQYQQAVKALEKARELTGND----ALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSI 485
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERleelEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 486 AGEVSRSDAgEKAREVIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQA 565
Cdd:COG1196 374 LAEAEEELE-ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 566 RLESAEDAVGEQ-AEKVRELQRRENDINAKAAQFEKVApawiAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADERETI 644
Cdd:COG1196 453 ELEEEEEALLELlAELLEEAALLEAALAELLEELAEAA----ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 645 TTRDKLQAEKQALEAEIERLAQPGGSDDARLQSLADTLGGTLLSEIyDDITLDDAPYFSALYGPARHAIVVPDLKGIKDK 724
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA-TFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 725 LLDLDDCPEDLYIIEGDADGFDDSVFDVEELEDAVCVHLNDRQLRYSRFPKIPLFGRAAREHRLETLREKREELVENYAK 804
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 805 ASFDAQKLQRLTQSfnqfvsnhmnvafNEDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQLtgakEAIALLNKLQHVV 884
Cdd:COG1196 688 LAEEELELEEALLA-------------EEEEERELAEAEEERLEEELEEEALEEQLEAEREEL----LEELLEEEELLEE 750
|
570 580
....*....|....*....|....*.
gi 491647617 885 NALEDDTLEARLEEVEARLSQADEAR 910
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREI 776
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
1336-1426 |
2.60e-13 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 66.87 E-value: 2.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1336 EELLDYRNYLELGIEVNR--GTDGWLQAESGALSTGEAIGTGQAILL--MVVQSWEEESRRLRgkdvipCRLLFLDEA-A 1410
Cdd:pfam13558 1 ARVLDYRNWLSFEVEVRDedGSEVETYRRSGGLSGGEKQLLAYLPLAaaLAAQYGSAEGRPPA------PRLVFLDEAfA 74
|
90
....*....|....*.
gi 491647617 1411 RLDAKSISTLFELCHR 1426
Cdd:pfam13558 75 KLDEENIRTALELLRA 90
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
274-631 |
3.22e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 3.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 274 YMRHANERRKKLELALQR-RGELLGSRRQLDDFQATFGRMTDELDALT-ESQTHLEQDYQAASDHLQLVQTAVRQQEKVE 351
Cdd:COG1196 233 KLRELEAELEELEAELEElEAELEELEAELAELEAELEELRLELEELElELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 352 RYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAVKALEKARELTG 431
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 432 NDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLS-SAAAKQFERGLELVRSIAGEVSRSDAGEKA--REVIAKGREF 508
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEAlAELEEEEEEEEEALEEAAEEEAELEEEEEAllELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 509 ANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQR--QFNETVTSEEAVELEMARQQARLESAEDAVGEQAEKVRELQR 586
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 491647617 587 RENDINAKAA-QFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLD 631
Cdd:COG1196 553 VEDDEVAAAAiEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
963-1436 |
1.52e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 72.64 E-value: 1.52e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 963 DLVERRHHFGYADAVALLDKSSELnEQLKAKLVDAERARTRSREQVKQVREQVNQYNQV--LISLKSSHQAKQETVAEFK 1040
Cdd:COG4913 596 RRIRSRYVLGFDNRAKLAALEAEL-AELEEELAEAEERLEALEAELDALQERREALQRLaeYSWDEIDVASAEREIAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1041 RELAEL-----GVRADVEAEERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAK 1115
Cdd:COG4913 675 AELERLdassdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1116 agWMDVLKIARSSNVEKQLNRREMAYmsAEELRSLSDKSLGALRLAVADNETLRDALRASEDiARPErkvlfYVAVYQHL 1195
Cdd:COG4913 755 --FAAALGDAVERELRENLEERIDAL--RARLNRAEEELERAMRAFNREWPAETADLDADLE-SLPE-----YLALLDRL 824
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1196 RERirhdiirtddpveaieemevELARLTEELTQREKRLAIssESVANI---IRKTIQREQNRIRLLNQGLSNIAFGQvk 1272
Cdd:COG4913 825 EED--------------------GLPEYEERFKELLNENSI--EFVADLlskLRRAIREIKERIDPLNDSLKRIPFGP-- 880
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1273 GVRLNVSIRETHaqlLEGLAEKAEQHQDLFGNNRLTFSEAMAKLFQRLNPHID-LGQRSPQVLG---EELLDYRNYLELG 1348
Cdd:COG4913 881 GRYLRLEARPRP---DPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIErLRSEEEESDRrwrARVLDVRNHLEFD 957
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1349 IEVNRGTDG---WLQAESGALSTGE-------AIGtgqAILLMVVQSWEEESRRLrgkdvipcRLLFLDEA-ARLDAKSI 1417
Cdd:COG4913 958 AEEIDREDGeevETYSSSGGKSGGEkqklayfILA---AALAYQLGLEGRGRPSF--------RTVVLDEAfSKMDEEFA 1026
|
490
....*....|....*....
gi 491647617 1418 STLFELCHRLDMQLLIAAP 1436
Cdd:COG4913 1027 RRALRLFKELGLQLLIATP 1045
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-1096 |
2.70e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 2.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 277 HANERRKKLELALQRRGELlgsRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASD-HLQLVQTAVRQQEKVERYQE 355
Cdd:TIGR02168 219 KAELRELELALLVLRLEEL---REELEELQEELKEAEEELEELTAELQELEEKLEELRLeVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 356 DLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAVKALEKARE--LTGND 433
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEelESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 434 ALSQ--ENAAEYLASLKAKEDAQTSELLSLKHKLdlsSAAAKQFERGLELVRSIAGEVSRSDAGEKAREVIAKGREfanl 511
Cdd:TIGR02168 376 ELEEqlETLRSKVAQLELQIASLNNEIERLEARL---ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE---- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 512 aanAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNEtvtseeavelEMARQQARLESAEDAVGEQ---AEKVREL---Q 585
Cdd:TIGR02168 449 ---LEELQEELERLEEALEELREELEEAEQALDAAER----------ELAQLQARLDSLERLQENLegfSEGVKALlknQ 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 586 RRENDINAKAAQFEKVAPAWIAAQEALekLAEqtgeelyDSQAVLDT-----MQRVMADERE----------TITTRDKL 650
Cdd:TIGR02168 516 SGLSGILGVLSELISVDEGYEAAIEAA--LGG-------RLQAVVVEnlnaaKKAIAFLKQNelgrvtflplDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 651 QAEKQALEAEIERLAQPGG---SDDARLQ-SLADTLGGTLLSEIYDD--------------ITLDD---APYFSALYGPA 709
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKdlvKFDPKLRkALSYLLGGVLVVDDLDNalelakklrpgyriVTLDGdlvRPGGVITGGSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 710 RH-----------AIVVPDLKGIKDKLLDLDDCPEDLyiiEGDADGFDDSVFDVEELEDAVCVHLNDRQLRYSRFPKIPL 778
Cdd:TIGR02168 667 KTnssilerrreiEELEEKIEELEEKIAELEKALAEL---RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 779 FGRAAREHRLETLREKREE-------LVENYAKASFDAQKLQRLTQSFNQFvsnhmnvafnedpEAALKDLREQRSNVQR 851
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEieeleerLEEAEEELAEAEAEIEELEAQIEQL-------------KEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 852 QLAQLRESEQQVRSQLTGAKEAIALLNK-LQHVVNALEDdtLEARLEEVEARLSQADEARhftREHGKALAELENLVSTL 930
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERrLEDLEEQIEE--LSEDIESLAAEIEELEELI---EELESELEALLNERASL 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 931 DadpEQFDALSAAYLQADETLQTLKKtlfalsdlverrhhfgyaDAVALLDKSSELNEQLKAKLVDAERARTRSREQVKQ 1010
Cdd:TIGR02168 886 E---EALALLRSELEELSEELRELES------------------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1011 VREQVNQYNQVLISLK----SSHQAKQETVAEFKRELAELG-VRADVEAE-ERARIRRDELNAQLSQSRNRKSELEKGLT 1084
Cdd:TIGR02168 945 LSEEYSLTLEEAEALEnkieDDEEEARRRLKRLENKIKELGpVNLAAIEEyEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
890
....*....|..
gi 491647617 1085 SIELEMKSLVKT 1096
Cdd:TIGR02168 1025 EIDREARERFKD 1036
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
493-1075 |
4.89e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 71.10 E-value: 4.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 493 DAGEKAREVIAkgrEFANLAANAEQLtsqhRDLERQMRSLQQAKTLSEQYQRQFNETVTSE------------------- 553
Cdd:COG4913 222 DTFEAADALVE---HFDDLERAHEAL----EDAREQIELLEPIRELAERYAAARERLAELEylraalrlwfaqrrlelle 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 554 ---EAVELEMARQQARLESAEDAVGEQAEKVRELQRR------------ENDINAKAAQFEKVAPAWIAAQEALEKL--- 615
Cdd:COG4913 295 aelEELRAELARLEAELERLEARLDALREELDELEAQirgnggdrleqlEREIERLERELEERERRRARLEALLAALglp 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 616 AEQTGEELYDSQAVLDTM--------QRVMADERETITTRDKLQAEKQALEAEIERLAQPGGSDDARLQSLADTLGGTLl 687
Cdd:COG4913 375 LPASAEEFAALRAEAAALlealeeelEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL- 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 688 seiydDITLDDAPYFS-----------------ALYGPARHAIVVPD---------LKGIKDKL-LDLDDCPEDLY---I 737
Cdd:COG4913 454 -----GLDEAELPFVGelievrpeeerwrgaieRVLGGFALTLLVPPehyaaalrwVNRLHLRGrLVYERVRTGLPdpeR 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 738 IEGDADG------FDDSVFD------VEELEDAVCVHlNDRQLR---------------YSRF--------PKIPLFGRA 782
Cdd:COG4913 529 PRLDPDSlagkldFKPHPFRawleaeLGRRFDYVCVD-SPEELRrhpraitragqvkgnGTRHekddrrriRSRYVLGFD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 783 AREhRLETLREKREELVENYAKASFDAQKLQRLTQSFNQFVSNHMNVAFNEDPEAALKDLREQRSNVQRQLAQLRESEqq 862
Cdd:COG4913 608 NRA-KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASS-- 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 863 vrSQLTGAKEAIallnklqhvvnaledDTLEARLEEVEARLSQADEARhftREHGKALAELENLVSTLDADPEQFDALSA 942
Cdd:COG4913 685 --DDLAALEEQL---------------EELEAELEELEEELDELKGEI---GRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 943 AYLQAdetlqtlkktlfalsDLVERRhhfgyaDAVALLDKSSELNEQLKAKLVDAERARTRSREqvkQVREQVNQYNQVL 1022
Cdd:COG4913 745 LELRA---------------LLEERF------AAALGDAVERELRENLEERIDALRARLNRAEE---ELERAMRAFNREW 800
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491647617 1023 ISLKSSHQAKQETVAEFKRELAELGVRADVEAEERARIRRDE--------LNAQLSQSRNR 1075
Cdd:COG4913 801 PAETADLDADLESLPEYLALLDRLEEDGLPEYEERFKELLNEnsiefvadLLSKLRRAIRE 861
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
479-1266 |
1.37e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 479 LELVRSIAGEVSR--------SDAGEKAREVIAKGREfANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETV 550
Cdd:TIGR02168 188 LDRLEDILNELERqlkslerqAEKAERYKELKAELRE-LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 551 TSEEAVELEMARQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVL 630
Cdd:TIGR02168 267 EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 631 DTMQRVMADERETITTRDKLQAE----KQALEAEIERLAqpggSDDARLQSLADTLGGTLlseIYDDITLDDAPyfsaly 706
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEElesrLEELEEQLETLR----SKVAQLELQIASLNNEI---ERLEARLERLE------ 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 707 gpARHAIVVPDLKGIKDKLLDLDdcpedlyiiegdadgFDDSVFDVEELEDAvcvhLNDRQLRYSRFpkiplfgraarEH 786
Cdd:TIGR02168 414 --DRRERLQQEIEELLKKLEEAE---------------LKELQAELEELEEE----LEELQEELERL-----------EE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 787 RLETLREKREELVENYAKASFDAQKLQRLTQSFNQFVSNHMNvafNEDPEAALKDLREQRSNVQRQLAQLRESEQQ---- 862
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG---FSEGVKALLKNQSGLSGILGVLSELISVDEGyeaa 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 863 ------------VRSQLTGAKEAIALL--NKLQHVVNALEDDTLEARLEEVEA-RLSQADEARHFTREHGKALAELENLV 927
Cdd:TIGR02168 539 ieaalggrlqavVVENLNAAKKAIAFLkqNELGRVTFLPLDSIKGTEIQGNDReILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 928 STLDA------DPEQFDALsAAYLQADETLQTLKKTLF------------ALSDLVERRHHFgyADAVALLDKSSELNEQ 989
Cdd:TIGR02168 619 SYLLGgvlvvdDLDNALEL-AKKLRPGYRIVTLDGDLVrpggvitggsakTNSSILERRREI--EELEEKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 990 LKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSS---HQAKQETVAEFKRELAELGVRADVEAEERARiRRDELN 1066
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEE-RLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1067 AQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAKAGWMDVLKiaRSSNVEKQLNRREMAYMSAEE 1146
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER--RIAATERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1147 LRSLSDKSLGALRLAVADNETLRDAL---RASEDIARPERKVLFY-----VAVYQHLRERIRHDIIRTDDPVEAI----E 1214
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALlneRASLEEALALLRSELEelseeLRELESKRSELRRELEELREKLAQLelrlE 932
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 491647617 1215 EMEVELARLTEELTQREKRLAISSESVANIIRKTIQREQNRIRLLNQGLSNI 1266
Cdd:TIGR02168 933 GLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-1104 |
1.43e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 1.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 348 EKVERYQEDLEELAVRLEEQMMVVEEATEQLS-MAEEQAHLseEEVDSLKTQLADYQQALDMQQTRAL--QYQQAVKAL- 423
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLErLRREREKA--ERYQALLKEKREYEGYELLKEKEALerQKEAIERQLa 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 424 EKARELTGNDALSQENAAEY------LASLKAKEDAQTS-ELLSLKHKLDLSSAAAKQFERGLEL----VRSIAGEVSRS 492
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLeeieqlLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEkereLEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 493 DA--GEKAREVIAKGREFANLAANAEQLTSQHRDLERQMRSL-QQAKTLSEQYQRQFNETVTSEEAVElEMARQQARLES 569
Cdd:TIGR02169 328 EAeiDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLrAELEEVDKEFAETRDELKDYREKLE-KLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 570 AEDAVGEQAEKVRELQRrenDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADERETIttrDK 649
Cdd:TIGR02169 407 ELDRLQEELQRLSEELA---DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY---DR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 650 LQAEKQALEAEIERL------AQPGGSDDARLQSLADTLGGTLLSEIYDDITLDDApYFSAL---YGPARHAIVVPD--- 717
Cdd:TIGR02169 481 VEKELSKLQRELAEAeaqaraSEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGER-YATAIevaAGNRLNNVVVEDdav 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 718 --------------------LKGIKDKLLDLDDCPEDLYI------IEGDaDGFDDSVFDVeeLEDAVCVHLNDRQLRY- 770
Cdd:TIGR02169 560 akeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIgfavdlVEFD-PKYEPAFKYV--FGDTLVVEDIEAARRLm 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 771 SRFPKIPLFG-------------RAAREHRLETLREKREELVENYAKASFDAQkLQRLTQSFNQfVSNHMNVAFnedpeA 837
Cdd:TIGR02169 637 GKYRMVTLEGelfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRE-LSSLQSELRR-IENRLDELS-----Q 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 838 ALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEaiallnKLQHVVNALEDDtlEARLEEVEARLSQADEARHFTREhg 917
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEE------DLSSLEQEIENV--KSELKELEARIEELEEDLHKLEE-- 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 918 kALAELENlvstlDADPEQFDALSAAYLQADETLQTLKKTLfalsdlverrhhfgyADAVALLDKSSELNEQLKAKLVDA 997
Cdd:TIGR02169 780 -ALNDLEA-----RLSHSRIPEIQAELSKLEEEVSRIEARL---------------REIEQKLNRLTLEKEYLEKEIQEL 838
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 998 ERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAEL-GVRADVEAEER-ARIRRDELNAQLSQSRNR 1075
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLkKERDELEAQLReLERKIEELEAQIEKKRKR 918
|
810 820
....*....|....*....|....*....
gi 491647617 1076 KSELEKGLTSIELEMKSLVKtLKKAGKEY 1104
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIED-PKGEDEEI 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
276-1047 |
1.94e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 276 RHANERRKKLE-LALQRR----------GELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAV 344
Cdd:TIGR02169 202 RLRREREKAERyQALLKEkreyegyellKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 345 RQ--QEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAVKA 422
Cdd:TIGR02169 282 KDlgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 423 LEKARELTGNDA--LSQENAA--EYLASLKAKEDAQTSELLSLKHKLD-LSSAAAKQFERGLELVRSIAGEVSRSDAGEK 497
Cdd:TIGR02169 362 LKEELEDLRAELeeVDKEFAEtrDELKDYREKLEKLKREINELKRELDrLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 498 AREVIAKgrEFANLAANAEQLTSQHRDLERQMRSLQQakTLSEQYQRQfnetvtseEAVELEMARQQARLESAEDAVGEQ 577
Cdd:TIGR02169 442 EKEDKAL--EIKKQEWKLEQLAADLSKYEQELYDLKE--EYDRVEKEL--------SKLQRELAEAEAQARASEERVRGG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 578 AEKVRELQRRENDINAKAAQFEKVAPAWIAAQE--ALEKLAEQTGEELYDSQAVLDTMQRVMADeRETITTRDKLQAEkq 655
Cdd:TIGR02169 510 RAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaAGNRLNNVVVEDDAVAKEAIELLKRRKAG-RATFLPLNKMRDE-- 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 656 alEAEIERLAQPGGSDDArlqsladtlggtllseiYDDITLDDApYFSALYGPARHAIVVPDLK-----GIKDKLLDLDD 730
Cdd:TIGR02169 587 --RRDLSILSEDGVIGFA-----------------VDLVEFDPK-YEPAFKYVFGDTLVVEDIEaarrlMGKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 731 cpeDLY-----IIEGDADGFDDSVFDVEELEDAvcVHLNDRQLRYSRFPKIPLFGRAAREHRLETLREKREELVENYAKA 805
Cdd:TIGR02169 647 ---ELFeksgaMTGGSRAPRGGILFSRSEPAEL--QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 806 SFDAQKLQRLTQSFNQfvsnhmnvafnedpeaALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIallNKLQHVVN 885
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKE----------------RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL---HKLEEALN 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 886 ALEDDTLEARLEEVEARLSQADEARhftREHGKALAELENLVSTLDADPEQFDalsaaylQADETLQTLKKTLFALSDLV 965
Cdd:TIGR02169 783 DLEARLSHSRIPEIQAELSKLEEEV---SRIEARLREIEQKLNRLTLEKEYLE-------KEIQELQEQRIDLKEQIKSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 966 ERRHHFGYADAVALLDKSSELN---EQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRE 1042
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEaalRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
....*
gi 491647617 1043 LAELG 1047
Cdd:TIGR02169 933 LSEIE 937
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
836-1297 |
2.10e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 836 EAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKLQHVVNALEDDTLEARLEEVEARLSQADEARHFTRE 915
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 916 HGKALAELENLVSTLDADPEQFDALSAAYLQADETLQTLKKTLFALSDlverrhhfgyadavALLDKSSELnEQLKAKLV 995
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR--------------AAAELAAQL-EELEEAEE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 996 DAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAEL--GVRADVEAEERARIRRDELNAQLSQSR 1073
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALleLLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1074 NRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAKAGWMDVLKIARSSNVEKQLNRREMAYMsAEELRSLSDK 1153
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVA-AAAIEYLKAA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1154 SLGALRLAVADNETLRDALRASEDIARPERKVLF--YVAVYQHLRERIRHDIIRTDDPVEAIEEM--------EVELARL 1223
Cdd:COG1196 570 KAGRATFLPLDKIRARAALAAALARGAIGAAVDLvaSDLREADARYYVLGDTLLGRTLVAARLEAalrravtlAGRLREV 649
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491647617 1224 TEELTQREKRLAISSESVANIIRKTIQREQNRIRLLNQGLSNIAFGQVKGVRLNVSIRETHAQLLEGLAEKAEQ 1297
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE 723
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
833-1075 |
2.03e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 833 EDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKLQHVVNAlEDDTLEARLEEVEARLSQADEARHF 912
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ-ELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 913 TREHGKALaeLENLVSTLDADPEQFDALSAAYLQADETLQTLKKTLFALSDLVErrhhfgyaDAVALLDKSSELNEQLKA 992
Cdd:COG4942 102 QKEELAEL--LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE--------ELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 993 KLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAELGVRADVEAEERARIRRDELNAQLSQS 1072
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAAL 251
|
...
gi 491647617 1073 RNR 1075
Cdd:COG4942 252 KGK 254
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
339-594 |
4.17e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.08 E-value: 4.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 339 LVQTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQ 418
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 419 AVKALEKARELTgndalsQENAAEYLASLKAKEDAQTSELLslkhkldLSSAAAKQFERGLELVRSIAGEvsRSDAGEKA 498
Cdd:COG4942 91 EIAELRAELEAQ------KEELAELLRALYRLGRQPPLALL-------LSPEDFLDAVRRLQYLKYLAPA--RREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 499 REVIAKGREF-ANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQ 577
Cdd:COG4942 156 RADLAELAALrAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
250
....*....|....*..
gi 491647617 578 AEKVRELQRRENDINAK 594
Cdd:COG4942 236 AAAAAERTPAAGFAALK 252
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
275-678 |
4.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 275 MRHANERRKKLE-LALQRRGELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQQEK-VER 352
Cdd:TIGR02168 679 IEELEEKIEELEeKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKeLTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 353 YQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAVKALEKARELTG- 431
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATEr 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 432 -NDALSQ--ENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSiagevSRSDAGEKAREVIAKGREF 508
Cdd:TIGR02168 839 rLEDLEEqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS-----ELEELSEELRELESKRSEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 509 -ANLAANAEQLTSQHRDLER-QMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAE---DAVG----EQAE 579
Cdd:TIGR02168 914 rRELEELREKLAQLELRLEGlEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEnkiKELGpvnlAAIE 993
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 580 KVRELQRRENDINakaAQFEKVAPAWIAAQEALEKLAEQTGEELydsqavLDTMQRVMADERETIT-------TRDKLQA 652
Cdd:TIGR02168 994 EYEELKERYDFLT---AQKEDLTEAKETLEEAIEEIDREARERF------KDTFDQVNENFQRVFPklfgggeAELRLTD 1064
|
410 420
....*....|....*....|....*.
gi 491647617 653 EKQALEAEIERLAQPGGSDDARLQSL 678
Cdd:TIGR02168 1065 PEDLLEAGIEIFAQPPGKKNQNLSLL 1090
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
8-465 |
7.90e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.23 E-value: 7.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 8 QSLTMVNWNGFFAR-TFDIDNLVTTLSGGNGAGKSTTMAAFITAMIPDQSLlHF-----------RN--------TTEAG 67
Cdd:COG4913 4 QRLQLINWGTFDGVhTIDFDGRGTLLTGDNGSGKSTLLDAIQTLLVPAKRP-RFnkaandagksdRTllsyvrgkYGSER 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 68 SSSASRDKGLhgklKPGACYAALDVV---NSRNQRILFGVRLQQVAGRDKKVDIKPFIVqglpsgVKPTDILIENVSaNQ 144
Cdd:COG4913 83 DEAGTRPVYL----RPGDTWSAIAATfanDGSGQTVTLAQVFWLKGDASSLGDVKRFFV------IADGPLDLEDFE-EF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 145 VRVRQLNEVKDALADYDTAHFKAFSsvtDYHAQMFefgalpKKLRNSSDR--SKFYRLIEASlygGISSaITKSLRDYLL 222
Cdd:COG4913 152 AHGFDIRALKARLKKQGVEFFDSFS---AYLARLR------RRLGIGSEKalRLLHKTQSFK---PIGD-LDDFVREYML 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 223 PQnggvKKAFQDMEvALRENRMTL----EAIKLTQRDRDLFKHLITESTNYvasdymRHANERRKKLElALQRRGELLGS 298
Cdd:COG4913 219 EE----PDTFEAAD-ALVEHFDDLerahEALEDAREQIELLEPIRELAERY------AAARERLAELE-YLRAALRLWFA 286
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 299 RRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQQ--EKVERYQEDLEELAVRLEEQMMVVEEATE 376
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEA 366
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 377 QLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRA-LQYQQAVKALEKARELTgnDALSQEnaaeyLASLKAKEDAQT 455
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALeEALAEAEAALRDLRREL--RELEAE-----IASLERRKSNIP 439
|
490
....*....|
gi 491647617 456 SELLSLKHKL 465
Cdd:COG4913 440 ARLLALRDAL 449
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
283-676 |
9.93e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 9.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 283 KKLELALQRRGELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQ----------QEKVER 352
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplyqelealEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 353 YQEDLEElavrLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKT--------QLADYQQALDMQQTRALQYQQAVKALE 424
Cdd:COG4717 144 LPERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEqlslateeELQDLAEELEELQQRLAELEEELEEAQ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 425 KARELTGNDALSQENAAEYLASLKA-KEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAGEKAREVIA 503
Cdd:COG4717 220 EELEELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 504 KGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTS--EEAVELEMARQQARLESA----------- 570
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEElqELLREAEELEEELQLEELeqeiaallaea 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 571 ----EDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKlaEQTGEELYDSQAVLDTMQRvmaderetitT 646
Cdd:COG4717 380 gvedEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEELEELEE----------E 447
|
410 420 430
....*....|....*....|....*....|
gi 491647617 647 RDKLQAEKQALEAEIERLAQPGGSDDARLQ 676
Cdd:COG4717 448 LEELREELAELEAELEQLEEDGELAELLQE 477
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
276-658 |
2.05e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 276 RHANERRKKLELalqRRGELLgsRRQLDDFQATFGRMTDELDALTESQTHLEQdyqAASDHLQLVQTAVRQQEKVERYQE 355
Cdd:PTZ00121 1176 KKAEAARKAEEV---RKAEEL--RKAEDARKAEAARKAEEERKAEEARKAEDA---KKAEAVKKAEEAKKDAEEAKKAEE 1247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 356 DLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEE--------EVDSLKTqlADYQQALDMQQTRALQYQQAVKALEKAR 427
Cdd:PTZ00121 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElkkaeekkKADEAKK--AEEKKKADEAKKKAEEAKKADEAKKKAE 1325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 428 ELTGN-DALSQ--ENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAGEKAREVIAK 504
Cdd:PTZ00121 1326 EAKKKaDAAKKkaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 505 GREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAV---GEQAEKV 581
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAkkkAEEAKKA 1485
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491647617 582 RELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADERETITTRDKLQAEKQALE 658
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
781-1259 |
3.56e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 781 RAAREHRLETLREKREELvenyakasfdAQKLQRLTQSFNQFVSNHMNVAFNEDPEAA-LKDLREQRSNVQRQLAQLRES 859
Cdd:COG1196 262 LAELEAELEELRLELEEL----------ELELEEAQAEEYELLAELARLEQDIARLEErRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 860 EQQVRSQLTGAKEAIALLNKLQHVVNALEDDTLEARLEEVEARLSQADEARHFTREHGKALAELENLVSTLDADPEQFDA 939
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 940 LSAAYLQADETLQTLKKTLFALSDLVERRHHfGYADAVALLDKSSELNEQLKAKLVDAERARTRSREQVKQVREQVNQYN 1019
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEE-ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1020 Q---VLISLKSSHQAKQETVAEFKR---------------------------ELAELGVRADVEAEERARIRRDELNAQ- 1068
Cdd:COG1196 491 ArllLLLEAEADYEGFLEGVKAALLlaglrglagavavligveaayeaaleaALAAALQNIVVEDDEVAAAAIEYLKAAk 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1069 --------LSQSRNRKSELEKGLTSIELEMKSLVKTLKK--AGKEYTDLRTFVVN--AKAGWMDVLKIARSSNVEKQLNR 1136
Cdd:COG1196 571 agratflpLDKIRARAALAAALARGAIGAAVDLVASDLReaDARYYVLGDTLLGRtlVAARLEAALRRAVTLAGRLREVT 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1137 REMA------YMSAEELRSLSDKSLGALRLAVADNETLRDALRASEDIARPERKVLFYVAVYQHLRERIRHDIIRTDDPV 1210
Cdd:COG1196 651 LEGEggsaggSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 491647617 1211 EAIEEMEVELARLTEELTQREKRLAISSESVANIIRKTIQREQNRIRLL 1259
Cdd:COG1196 731 EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
343-1046 |
3.58e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.97 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 343 AVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEV---DSLKTQLADYQQALDMQQTRALQYQQA 419
Cdd:TIGR00618 196 AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLtqkREAQEEQLKKQQLLKQLRARIEELRAQ 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 420 VKALEKAREltgndALSQENAAEYLAslkakEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAGEKAR 499
Cdd:TIGR00618 276 EAVLEETQE-----RINRARKAAPLA-----AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 500 EVIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQ--RQFNETVTSEEAVELEMARQQARLESAEDAVGEQ 577
Cdd:TIGR00618 346 LLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTtlTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 578 ---AEKVRELQRRENDINAKAAQfeKVAPAWIAAQEALEKLAEQTGEELYDsqavLDTMQRVMADERETITTRDKLQAEK 654
Cdd:TIGR00618 426 lahAKKQQELQQRYAELCAAAIT--CTAQCEKLEKIHLQESAQSLKEREQQ----LQTKEQIHLQETRKKAVVLARLLEL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 655 QALEAEIERlaqpggsddaRLQSLADTLGGTLLSEIydditlDDAPYFSALYGPARHAIVVPDLKGIKDKLLdlddcpED 734
Cdd:TIGR00618 500 QEEPCPLCG----------SCIHPNPARQDIDNPGP------LTRRMQRGEQTYAQLETSEEDVYHQLTSER------KQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 735 LYIIEGDADGFDDSVFDVEELEDAVCVHLND-RQLRYSRFPKIPLFGRAAREHRLETLREKR--EELVENYAKASFDAQK 811
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSILTQCDNRSKEDIPNlQNITVRLQDLTEKLSEAEDMLACEQHALLRklQPEQDLQDVRLHLQQC 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 812 LQRLTQSFNQFVSNHMNVAFNEDPEAALKDLREQRSNVQRQLAQLRESEQQVRsQLTGAKEAIALLNKLQHVVNALEDDT 891
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKE-QLTYWKEMLAQCQTLLRELETHIEEY 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 892 LEARLEEVEARLSQADEARHFTREHGKALAELENLVstldadPEQFDALSAAYLQADETLQTLKKTLFALSDLvERRHHF 971
Cdd:TIGR00618 717 DREFNEIENASSSLGSDLAAREDALNQSLKELMHQA------RTVLKARTEAHFNNNEEVTAALQTGAELSHL-AAEIQF 789
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491647617 972 GYADAVALLDKSSELNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAEL 1046
Cdd:TIGR00618 790 FNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQL 864
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
8-55 |
7.43e-07 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 47.59 E-value: 7.43e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 491647617 8 QSLTMVNWNGFFARTFDID-NLVTTLSGGNGAGKSTTMAAFITAMIPDQ 55
Cdd:pfam13555 2 TRLQLINWGTFDGHTIPIDpRGNTLLTGPSGSGKSTLLDAIQTLLVPAK 50
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
389-1081 |
7.75e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 7.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 389 EEEVDSLKTQLADYQQALDMQQT-RALQYQQAVKALEKARELTGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDl 467
Cdd:COG1196 199 ERQLEPLERQAEKAERYRELKEElKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 468 ssAAAKQFERGLELVRSIAGEVSRSDAGEKAREviakgREFANLAANAEQLTSQHRDLERQMRSLQQAKtlsEQYQRQFN 547
Cdd:COG1196 278 --ELELELEEAQAEEYELLAELARLEQDIARLE-----ERRRELEERLEELEEELAELEEELEELEEEL---EELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 548 ETVTSEEAVELEMARQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQ 627
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 628 AVLDTMQRVMADERETITTRDKLQAEKQALEAEIERLAQPGGSDDARLQSLADTLGGTLLSEIY-DDITLDDAPYFSALY 706
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 707 GPARHAIVVPDLKGIKDKLLDLDDCPEDLYIiegdadgfddsvfDVEELEDAVCVHLNDRQLRysrfpkiplFGRAAREH 786
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEA-------------ALEAALAAALQNIVVEDDE---------VAAAAIEY 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 787 RLETLREKREELVENYAKASFDAQKLQRLtqsfnQFVSNHMNVAFNEDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQ 866
Cdd:COG1196 566 LKAAKAGRATFLPLDKIRARAALAAALAR-----GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 867 LTGAKEAIALLnklqhvvnaleddtlearleEVEARLSQADEARHFTREHGKALAELEnlvstldadpeqfdalsaaylq 946
Cdd:COG1196 641 TLAGRLREVTL--------------------EGEGGSAGGSLTGGSRRELLAALLEAE---------------------- 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 947 adetlqtlkktlfalsdlverrhhfgyADAVALLDKSSELNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLK 1026
Cdd:COG1196 679 ---------------------------AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 491647617 1027 SSHQAKQETVAEFKRELAELGVRADVEAEERarirrDELNAQLSQSRNRKSELEK 1081
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPPDL-----EELERELERLEREIEALGP 781
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
280-642 |
1.73e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 280 ERRKKLELALQRRGELLGSRRQLDDFQATFgRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQQEK----VERYQE 355
Cdd:COG4717 99 ELEEELEELEAELEELREELEKLEKLLQLL-PLYQELEALEAELAELPERLEELEERLEELRELEEELEEleaeLAELQE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 356 DLEELAVRLEEQM-MVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDmQQTRALQYQQAVKALEKAREL----- 429
Cdd:COG4717 178 ELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE-QLENELEAAALEERLKEARLLlliaa 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 430 ------------------------------------TGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAK 473
Cdd:COG4717 257 allallglggsllsliltiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSP 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 474 QFERGL-ELVRSIAGEVSRSDAGEKAREVIAKGREFANL-----AANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFN 547
Cdd:COG4717 337 EELLELlDRIEELQELLREAEELEEELQLEELEQEIAALlaeagVEDEEELRAALEQAEEYQELKEELEELEEQLEELLG 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 548 ETVTSEEAVELEmaRQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQtgEELYDSQ 627
Cdd:COG4717 417 ELEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAEL--RELAEEW 492
|
410
....*....|....*
gi 491647617 628 AVLDTMQRVMADERE 642
Cdd:COG4717 493 AALKLALELLEEARE 507
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
786-1047 |
2.40e-06 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 52.00 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 786 HRLETLREKREELVENYAKAsfdAQKLQRLTQSFNQFVSnhmnVAFNEDPEAALKDLREQRSNVQRqlaqLRESEQQVRS 865
Cdd:COG0497 165 RAWRALKKELEELRADEAER---ARELDLLRFQLEELEA----AALQPGEEEELEEERRRLSNAEK----LREALQEALE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 866 QLTGAKE-AIALLNKLQHVVNALE--DDTLEARLEEVEARLSQADEARHftrehgkalaELENLVSTLDADPEQfdalsa 942
Cdd:COG0497 234 ALSGGEGgALDLLGQALRALERLAeyDPSLAELAERLESALIELEEAAS----------ELRRYLDSLEFDPER------ 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 943 aylqadetLQTLKKTLFALSDLvERRHHfgyADAVALLDKSSELNEQLkAKLVDAERARTRSREQVKQVREQVNQYNQVL 1022
Cdd:COG0497 298 --------LEEVEERLALLRRL-ARKYG---VTVEELLAYAEELRAEL-AELENSDERLEELEAELAEAEAELLEAAEKL 364
|
250 260
....*....|....*....|....*....
gi 491647617 1023 islkssHQAKQETVAEF----KRELAELG 1047
Cdd:COG0497 365 ------SAARKKAAKKLekavTAELADLG 387
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
843-1265 |
2.96e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 2.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 843 REQRSNVQRQLAQLRESEQQVRSQLTGAKEaiallnklqhvvnaleddTLEARLEEVEARL----SQADEAR----HFTR 914
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKR------------------MYEDKIEELEKQLvlanSELTEARterdQFSQ 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 915 EHG-------KALAELENLVSTLDADPEQFDALSAAYLQADETLQTLKKTLFALSDLVERRHhfgyadavALLDK-SSEL 986
Cdd:pfam15921 371 ESGnlddqlqKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE--------ALLKAmKSEC 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 987 NEQLKAKLVdAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAELgvRADVEAEERArirRDELN 1066
Cdd:pfam15921 443 QGQMERQMA-AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL--TASLQEKERA---IEATN 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1067 AQLSQSRNR-----------KSElEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNA---------KAGWMDVLKiar 1126
Cdd:pfam15921 517 AEITKLRSRvdlklqelqhlKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrTAGAMQVEK--- 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1127 sSNVEKQLNRREMAYMSAEELRSLSDKSLGALRLAVADNETLR--------DALRASEDIARPERKVLFYVAV------- 1191
Cdd:pfam15921 593 -AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKvklvnagsERLRAVKDIKQERDQLLNEVKTsrnelns 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1192 ----YQHLRERIRHdiiRTDDPVEAIEEMEVELARLTEELTQREKRL-------------AISSESVANIIRKTIQREQN 1254
Cdd:pfam15921 672 lsedYEVLKRNFRN---KSEEMETTTNKLKMQLKSAQSELEQTRNTLksmegsdghamkvAMGMQKQITAKRGQIDALQS 748
|
490
....*....|.
gi 491647617 1255 RIRLLNQGLSN 1265
Cdd:pfam15921 749 KIQFLEEAMTN 759
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
289-676 |
5.51e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.89 E-value: 5.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 289 LQRRGELLGSRRQLDDfqatfgrMTDELDALTESQTHLEQDYQAASDHLQLVQTAV---RQQEKVERYqedleelavrle 365
Cdd:pfam17380 236 MERRKESFNLAEDVTT-------MTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVserQQQEKFEKM------------ 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 366 EQMMVVEEATEQLSMAEEQAHLSEEEVDSlktqladyQQALDMQQtrALQYQQAVKALEKARELtgnDALSQENAAEYLA 445
Cdd:pfam17380 297 EQERLRQEKEEKAREVERRRKLEEAEKAR--------QAEMDRQA--AIYAEQERMAMEREREL---ERIRQEERKRELE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 446 SLKAKEdaqtsellslkhkldlssaAAKQFERGLELVRSiagEVSRSDAGEKAREVIAKGREFANLAanaeqlTSQHRDL 525
Cdd:pfam17380 364 RIRQEE-------------------IAMEISRMRELERL---QMERQQKNERVRQELEAARKVKILE------EERQRKI 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 526 ERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARlesaedavgEQAEKVRELQRRENDINAKAAQFEKVAPAW 605
Cdd:pfam17380 416 QQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ---------ERQQQVERLRQQEEERKRKKLELEKEKRDR 486
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491647617 606 IAAQEALEKLAEQTGEElyDSQAVLDTMQRVMADERETITTRDKLQAEKQALEAEIERLAQPGGSDDARLQ 676
Cdd:pfam17380 487 KRAEEQRRKILEKELEE--RKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQ 555
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
233-666 |
1.26e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 233 QDMEVALRENRMTLEAiklTQRDRDLFKHLITESTNyVASDYMRHANERRKKLEL-------ALQRRGELLGS----RRQ 301
Cdd:PRK02224 254 ETLEAEIEDLRETIAE---TEREREELAEEVRDLRE-RLEELEEERDDLLAEAGLddadaeaVEARREELEDRdeelRDR 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 302 LDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQ-QEKVERYQEDLEELAVRLEEQMMVVEEATEQLSM 380
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEaREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 381 AEEQAHLSEEEVDSLKTQLADYQQALdmqqtralqyQQAVKALEKARELtgndalsqenaaeyLASLKAKEDAQTSElls 460
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATL----------RTARERVEEAEAL--------------LEAGKCPECGQPVE--- 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 461 lkhkldlssaaakqferglelvrsiagEVSRSDAGEKAREVIAKgrefanLAANAEQLTSQHRDLERQMRSLQQAKTLSE 540
Cdd:PRK02224 463 ---------------------------GSPHVETIEEDRERVEE------LEAELEDLEEEVEEVEERLERAEDLVEAED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 541 QYQRQFNETVTSEEavelemarqqaRLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVA-PAWIAAQEALEKLAEqt 619
Cdd:PRK02224 510 RIERLEERREDLEE-----------LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAaEAEEEAEEAREEVAE-- 576
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 491647617 620 geelydsqavLDTMQRVMADERETITTRDKLQAEKQALEAEIERLAQ 666
Cdd:PRK02224 577 ----------LNSKLAELKERIESLERIRTLLAAIADAEDEIERLRE 613
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
831-1186 |
2.00e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 831 FNEDPEAALKDLREQRSNVQRQLAQLRESEQQV---RSQLTGAKEAIALLNKLQHV---VNALEDDTLEARLEEVEARLS 904
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLerlRREREKAERYQALLKEKREYegyELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 905 QAD-EARHFTREHGKALAELENLVSTLDADPEQFDALSaaylqaDETLQTLKKTLFALSDLVERrhhfgyadAVALLDKS 983
Cdd:TIGR02169 248 SLEeELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG------EEEQLRVKEKIGELEAEIAS--------LERSIAEK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 984 SELNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAELGVRAD---------VEA 1054
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAetrdelkdyREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1055 EERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVvnAKAGWMDVLKIARSSNVEKQL 1134
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI--KKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 491647617 1135 NRREmaymsaEELRSLSDKsLGALRLAVADNETLRDALRASEDIARPERKVL 1186
Cdd:TIGR02169 472 YDLK------EEYDRVEKE-LSKLQRELAEAEAQARASEERVRGGRAVEEVL 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
976-1267 |
2.98e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 976 AVALLDKSSELNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAELGVRADVEAE 1055
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1056 ERARI--RRDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRtfvvnakagwmDVLKIARSSNVEKQ 1133
Cdd:COG1196 310 RRRELeeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-----------EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1134 LNRREMAYMSAEELRSLSDKSLGALRLAVADNETLRDALRASEDIARperkvlfyvavyqhLRERIRHDIIRTDDPVEAI 1213
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE--------------LEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 491647617 1214 EEMEVELARLTEELTQREKRLAISSESVANIIRKTIQREQNRIRLLNQGLSNIA 1267
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
782-1296 |
3.85e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 782 AAREHRLETLREKREELVENYAKASFDAQKLQRLTQSFNQFVSNHMNVAFN-EDPEAALKDLREQRSNVQRQLAQLRESE 860
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSkRKLEEKIRELEERIEELKKEIEELEEKV 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 861 QQVRSQLTGAKEAIAL---LNKLQHVVNALED--DTLEARLEEVEARLSQADEARHFTREHGKALAELENLVSTLDADPE 935
Cdd:PRK03918 283 KELKELKEKAEEYIKLsefYEEYLDELREIEKrlSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 936 QFDALsaayLQADETLQTLKKTLFALSDlverrhhfgyadavalldksselnEQLKAKLVDAERARTRSREQVKQVREQV 1015
Cdd:PRK03918 363 LYEEA----KAKKEELERLKKRLTGLTP------------------------EKLEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1016 NqynqvliSLKSSHQAKQETVAEFKRELAELGV-RADVEAEERARIRRdELNAQLSQSRNRKSELEKGLTSIELEMKSLV 1094
Cdd:PRK03918 415 G-------ELKKEIKELKKAIEELKKAKGKCPVcGRELTEEHRKELLE-EYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1095 KTLKKAgKEYTDLRTFVvnakagwmDVLKIARSSNVEKQLNRREMAYMSAEELRSLSDKSLGALRLAVAD---------- 1164
Cdd:PRK03918 487 KVLKKE-SELIKLKELA--------EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKElekleelkkk 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1165 ----NETLRDALRASEDIARPERKVLFyvAVYQHLRERIR------HDIIRTDDPVEAIEEMEVELARLTEELTQREKRL 1234
Cdd:PRK03918 558 laelEKKLDELEEELAELLKELEELGF--ESVEELEERLKelepfyNEYLELKDAEKELEREEKELKKLEEELDKAFEEL 635
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1235 AiSSESVANIIRKTI--------QREQNRIRLLNQGLSNIAFGQVKGVRLNVSIRETHAQLLEGLAEKAE 1296
Cdd:PRK03918 636 A-ETEKRLEELRKELeelekkysEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
345-1093 |
4.12e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 345 RQQEKVERYQEDLEELAVRLEEQMM-VVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQAldmqqtralqyqqavkAL 423
Cdd:pfam12128 276 SRQEERQETSAELNQLLRTLDDQWKeKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDA----------------DI 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 424 EKAreltgndALSQENAAEYLASLKAKE---DAQTSELLSLKHKLDLSSAAAKQferglELVRSIAGEVSRSDageKARE 500
Cdd:pfam12128 340 ETA-------AADQEQLPSWQSELENLEerlKALTGKHQDVTAKYNRRRSKIKE-----QNNRDIAGIKDKLA---KIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 501 VIAKGREFANlaANAEQLTSQHRDlerQMrslqqaktlsEQYQRQFNEtvtSEEAVELEMARQQARLESAedavgeQAEK 580
Cdd:pfam12128 405 ARDRQLAVAE--DDLQALESELRE---QL----------EAGKLEFNE---EEYRLKSRLGELKLRLNQA------TATP 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 581 VRELQRRENDINAKaaqfekvapawiAAQEALEKlAEQTGEELYDSQAVLDTmQRVMADERETITTRdKLQAEKQALEAE 660
Cdd:pfam12128 461 ELLLQLENFDERIE------------RAREEQEA-ANAEVERLQSELRQARK-RRDQASEALRQASR-RLEERQSALDEL 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 661 IERLAQPGGSDDARLQSladtlggtllseiydditldDAPYFSALYGparhaivvpdlKGIKDKLL---DLDdcPEDLYI 737
Cdd:pfam12128 526 ELQLFPQAGTLLHFLRK--------------------EAPDWEQSIG-----------KVISPELLhrtDLD--PEVWDG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 738 IEGDADGFDDSVFDVEELEDAVCVHLNDrQLRYSrfpkiplfgRAAREHRLETLREKREELVENYAKASFDAQKLQR-LT 816
Cdd:pfam12128 573 SVGGELNLYGVKLDLKRIDVPEWAASEE-ELRER---------LDKAEEALQSAREKQAAAEEQLVQANGELEKASReET 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 817 QSFNQFVSNHMNvafnedpeaaLKDLREQRSNVQRQLAQLRESEQQ--VRSQLTGAKEAIALLNKLQHVVNALEDDTLEA 894
Cdd:pfam12128 643 FARTALKNARLD----------LRRLFDEKQSEKDKKNKALAERKDsaNERLNSLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 895 RLEEVEARLSqadearhftrehgkalaelenLVSTLDADPEQFD-ALSAAYLQADETLQTLKKTlfalsdlverrhhfgY 973
Cdd:pfam12128 713 RTEKQAYWQV---------------------VEGALDAQLALLKaAIAARRSGAKAELKALETW---------------Y 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 974 ADAVALLDksseLNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSH-QAKQETVAEFKRELAELgvRADV 1052
Cdd:pfam12128 757 KRDLASLG----VDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRrPRLATQLSNIERAISEL--QQQL 830
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 491647617 1053 EA-EERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMKSL 1093
Cdd:pfam12128 831 ARlIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL 872
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
290-664 |
4.44e-05 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 47.75 E-value: 4.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 290 QRRGELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQQEkveryqEDLEELAVRLEEQMM 369
Cdd:pfam19220 45 QAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAE------AAKEELRIELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 370 VVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALdmqqtralqyQQAVKALEKARELTGndALSQENAAeylasLKA 449
Cdd:pfam19220 119 QAEALERQLAAETEQNRALEEENKALREEAQAAEKAL----------QRAEGELATARERLA--LLEQENRR-----LQA 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 450 KEDAQTSELLSLKHKL-DLSSAAAKQFERGLELVRSIAGEVSRSDAGEKARE--VIAKGREFANLAANAEQLTSQHRDLE 526
Cdd:pfam19220 182 LSEEQAAELAELTRRLaELETQLDATRARLRALEGQLAAEQAERERAEAQLEeaVEAHRAERASLRMKLEALTARAAATE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 527 RqmrSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQAEKVRELQRRENDINAKAAQFEKVapawI 606
Cdd:pfam19220 262 Q---LLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAEMLTKA----L 334
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 491647617 607 AAQEALEKLAEQTGEELYDSQAVLDtmqrvmaderetittrDKLQAEKQALEAEIERL 664
Cdd:pfam19220 335 AAKDAALERAEERIASLSDRIAELT----------------KRFEVERAALEQANRRL 376
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
369-1146 |
5.73e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 5.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 369 MVVEEATEQLSMAEEqAHLSEEEVDSLktqLADYQQALDMQQTR--ALQYQQAVKALEKA-----------RELTGNDAL 435
Cdd:pfam12128 201 MIVAILEDDGVVPPK-SRLNRQQVEHW---IRDIQAIAGIMKIRpeFTKLQQEFNTLESAelrlshlhfgyKSDETLIAS 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 436 SQENAAEYLASLKAKEDAQTSELLSLKHKL--DLSSAAA--KQFERGLELVRSIAGEVSRSDAgekareviakgrefANL 511
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELngELSAADAavAKDRSELEALEDQHGAFLDADI--------------ETA 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 512 AANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNetvTSEEAVELEMARQQARLESAEDAVGEqaEKVRELQRRENDI 591
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN---RRRSKIKEQNNRDIAGIKDKLAKIRE--ARDRQLAVAEDDL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 592 NAKAAQFEKVAPAWIA-AQEALEKLAEQTGEE-------LYDSQAVLDTMQRVMADE--RETITTRDK----LQAEKQAL 657
Cdd:pfam12128 418 QALESELREQLEAGKLeFNEEEYRLKSRLGELklrlnqaTATPELLLQLENFDERIEraREEQEAANAeverLQSELRQA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 658 EA----------EIERLAQPGGSDDARLQSLADTLGGTLLSEIYDDitlddAPYFSALYGparhaivvpdlKGIKDKLL- 726
Cdd:pfam12128 498 RKrrdqasealrQASRRLEERQSALDELELQLFPQAGTLLHFLRKE-----APDWEQSIG-----------KVISPELLh 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 727 --DLDdcPEDLYIIEGDADGFDDSVFDVEELEDAVCVHLNDrQLRYSRfpkiplfgrAAREHRLETLREKREELVENYAK 804
Cdd:pfam12128 562 rtDLD--PEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE-ELRERL---------DKAEEALQSAREKQAAAEEQLVQ 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 805 ASFDAQKLQR-LTQSFNQFVSNHMNvafnedpeaaLKDLREQRSNVQRQLAQLRESEQQ--VRSQLTGAKEAIALLNKLQ 881
Cdd:pfam12128 630 ANGELEKASReETFARTALKNARLD----------LRRLFDEKQSEKDKKNKALAERKDsaNERLNSLEAQLKQLDKKHQ 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 882 HVVNALEDDTLEARLEEVEARLSqadearhftrehgkalaelenLVSTLDADPEQFD-ALSAAYLQADETLQTLKKTlfa 960
Cdd:pfam12128 700 AWLEEQKEQKREARTEKQAYWQV---------------------VEGALDAQLALLKaAIAARRSGAKAELKALETW--- 755
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 961 lsdlverrhhfgYADAVALLDksseLNEQLKAKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSH-QAKQETVAEF 1039
Cdd:pfam12128 756 ------------YKRDLASLG----VDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRrPRLATQLSNI 819
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1040 KRELAELgvradveaeerarirRDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAKAGWM 1119
Cdd:pfam12128 820 ERAISEL---------------QQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQA 884
|
810 820
....*....|....*....|....*..
gi 491647617 1120 DVLKIARSSNVEKQLNRREMAYMSAEE 1146
Cdd:pfam12128 885 QGSIGERLAQLEDLKLKRDYLSESVKK 911
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
280-660 |
7.08e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 7.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 280 ERRKKLElALQRRGELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDhlqlVQTAVRQQEKVERYQEdLEE 359
Cdd:PTZ00121 1375 EAKKKAD-AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE----KKKADEAKKKAEEAKK-ADE 1448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 360 LAVRLEEQMMVVE--EATEQLSMAEEQAHLSEE--EVDSLKTQLADYQQALDMQQTRALQYQQAvKALEKARELTGNDAL 435
Cdd:PTZ00121 1449 AKKKAEEAKKAEEakKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAAEAKKKA-DEAKKAEEAKKADEA 1527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 436 SQENAAEYLASLKAKEDAQTSELL----SLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAGEKAREVIAKGREFANL 511
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAEEKKKADELkkaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 512 AANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQAEKVRELQRRENDI 591
Cdd:PTZ00121 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 491647617 592 NAKAAQFEKVAPAWIAAQEALEKLAEQT--GEELYDSQAVldtmQRVMADERETITTRDKLQAEKQALEAE 660
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKkkAEELKKAEEE----NKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
316-480 |
7.93e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.99 E-value: 7.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 316 LDALTESQTHLEQDYQAASDhlqLVQTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSL 395
Cdd:COG0497 225 REALQEALEALSGGEGGALD---LLGQALRALERLAEYDPSLAELAERLESALIELEEAASELRRYLDSLEFDPERLEEV 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 396 KTQLADYQQAldmqqtrALQYQQAVKAL-----EKARELtgnDALsqENAAEYLASLKAKEDAQTSELLSLKHKL-DLSS 469
Cdd:COG0497 302 EERLALLRRL-------ARKYGVTVEELlayaeELRAEL---AEL--ENSDERLEELEAELAEAEAELLEAAEKLsAARK 369
|
170
....*....|.
gi 491647617 470 AAAKQFERGLE 480
Cdd:COG0497 370 KAAKKLEKAVT 380
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
261-717 |
8.33e-05 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 47.27 E-value: 8.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 261 HLITESTNYVASDYMRHANERRKKLELALQRRGELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLV 340
Cdd:COG4995 7 LALLAALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 341 QTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAV 420
Cdd:COG4995 87 LALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 421 KALEKARELTGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAGEKARE 500
Cdd:COG4995 167 ALALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 501 VIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQAEK 580
Cdd:COG4995 247 AAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLL 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 581 VRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADERETITTRDKLQAEKQALEAE 660
Cdd:COG4995 327 LAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAA 406
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491647617 661 IERLAQPGGSDDARLQSLADTLGGTLLSEIYDDITLDDAPYFSALY-----------GPARHAIVVPD 717
Cdd:COG4995 407 QLLRLLLAALALLLALAAYAAARLALLALIEYIILPDRLYAFVQLYqlliapieaelPGIKRLVIVPD 474
|
|
| type_I_sec_TolC |
TIGR01844 |
type I secretion outer membrane protein, TolC family; Members of this model are outer membrane ... |
341-571 |
9.39e-05 |
|
type I secretion outer membrane protein, TolC family; Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins]
Pssm-ID: 273829 [Multi-domain] Cd Length: 415 Bit Score: 46.60 E-value: 9.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 341 QTAVRQQEKvERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHlseeevdSLKTQLADYQQAL--------DMQQTR 412
Cdd:TIGR01844 93 AEAAALAAR-ETLRATAQDLILRTAEAYMEVLRAQEILALAEANLA-------ALKEQLDLARARFdvglgtrtDVLQAE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 413 A---------LQYQQAVK-ALEKARELTGNDALSQE-------NAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQF 475
Cdd:TIGR01844 165 AryasaraqlIQAQNNLDdAKAQLRRLVGQPELAPLavpsfpaELPEPLDQLLEIAEASNPLLLAAQAAVDAARYQVEQA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 476 ERG------LELVRSIAGEVSRSDAGEKARE----------VIAKGREFANLAANAEQLTSQHRDLERQMRSLQQakTLS 539
Cdd:TIGR01844 245 RAGhlptlsLTASTGNSDTSSGGSGNSDSDTysvglnvsipLYQGGATSAQVRQAAHQLNQSRSTLESQKRTVRQ--QVR 322
|
250 260 270
....*....|....*....|....*....|..
gi 491647617 540 EQYQrQFNETVTSEEAVELEMARQQARLESAE 571
Cdd:TIGR01844 323 NAWS-NLNAAAASVQAYEQQVASAQKALDAYR 353
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
495-1107 |
1.09e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 495 GEKAREVIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQfnetvtsEEAVELEMARQQARLESAEDAV 574
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE-------LESLEGSKRKLEEKIRELEERI 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 575 GEQAEKVRELQRRENDINakaaQFEKVAPAWIAaqeaLEKLAEQTGEELYDSQAVLDTMQRVMADERETITTRDKLQAEK 654
Cdd:PRK03918 269 EELKKEIEELEEKVKELK----ELKEKAEEYIK----LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 655 QALEAEIE-------------RLAQPGGSDDARLQSLADTLGGTLLSEIYDDItlddapyfsaLYGPARHAIVVPDLKGI 721
Cdd:PRK03918 341 EELKKKLKelekrleeleerhELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----------EELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 722 KDKLLDLDDCPEDLYIiegdadgfddsvfDVEELEDAVcvhlndrqlrysrfPKIPLFGRA-AREHRLETLREKREELve 800
Cdd:PRK03918 411 TARIGELKKEIKELKK-------------AIEELKKAK--------------GKCPVCGRElTEEHRKELLEEYTAEL-- 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 801 nyakasfdaqklqrltqsfnqfvsnhmnvafnedpeaalKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKL 880
Cdd:PRK03918 462 ---------------------------------------KRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 881 QHVVNaLEDDTLEARLEEVEARlsqADEARHFTREhgkaLAELENLVSTLDADPEQFDALSAAYLQADETLQTLKKTLfa 960
Cdd:PRK03918 503 EQLKE-LEEKLKKYNLEELEKK---AEEYEKLKEK----LIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL-- 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 961 lSDLVERRHHFGYADAVALLDKSSELNEQLKA--KLVDAERARTRSREQVKQVREQVNQYNQVLISLKSShqakqetVAE 1038
Cdd:PRK03918 573 -AELLKELEELGFESVEELEERLKELEPFYNEylELKDAEKELEREEKELKKLEEELDKAFEELAETEKR-------LEE 644
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491647617 1039 FKRELAELGVRADVEAEERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMKSL---VKTLKKAGKEYTDL 1107
Cdd:PRK03918 645 LRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLkeeLEEREKAKKELEKL 716
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
526-952 |
1.23e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 526 ERQMRSLQQAKTLSEQYQRQFNETVTSEEAV-ELEMARQQARLESAE--DAVGEQAEKVRELQRRENDINAKAAQFEKVA 602
Cdd:PRK02224 230 EQARETRDEADEVLEEHEERREELETLEAEIeDLRETIAETEREREElaEEVRDLRERLEELEEERDDLLAEAGLDDADA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 603 PAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADERETITTRD----KLQAEKQALEAEIERLAQPGGSDDARLQSL 678
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEeraeELREEAAELESELEEAREAVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 679 ADTLggTLLSEIYDD--ITLDDAPYFSALYGPARHAI------VVPDLKGIKDK------LLDLDDCPEDLYIIEG--DA 742
Cdd:PRK02224 390 EEEI--EELRERFGDapVDLGNAEDFLEELREERDELrereaeLEATLRTARERveeaeaLLEAGKCPECGQPVEGspHV 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 743 DGFDDSVFDVEELEDAVC---VHLNDRQLRYSRFPKIplfgrAAREHRLETLREKREELVENYA--KASFDAQKLQRltQ 817
Cdd:PRK02224 468 ETIEEDRERVEELEAELEdleEEVEEVEERLERAEDL-----VEAEDRIERLEERREDLEELIAerRETIEEKRERA--E 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 818 SFNQFVSNHMNVAfnEDPEAALKDLREQRSNVQRQLAQLRESEQQVrsqltgaKEAIALLNKLQHVVNALEDdtLEARLE 897
Cdd:PRK02224 541 ELRERAAELEAEA--EEKREAAAEAEEEAEEAREEVAELNSKLAEL-------KERIESLERIRTLLAAIAD--AEDEIE 609
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 491647617 898 EVEARLSQADEARHFTREHgkaLAELENLVSTLDA--DPEQFDALSAAYLQADETLQ 952
Cdd:PRK02224 610 RLREKREALAELNDERRER---LAEKRERKRELEAefDEARIEEAREDKERAEEYLE 663
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
833-1239 |
1.75e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 833 EDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIA-LLNKLQhvVNALEDDTLEARLEEVEARLsqaDEARH 911
Cdd:PRK02224 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDdLLAEAG--LDDADAEAVEARREELEDRD---EELRD 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 912 FTREHGKALAELENLVSTLDADPEQFDALSAaylQADETLQTLKKTLFALSDLVERRhhfgyADAVALLDKSSELNEqlk 991
Cdd:PRK02224 329 RLEECRVAAQAHNEEAESLREDADDLEERAE---ELREEAAELESELEEAREAVEDR-----REEIEELEEEIEELR--- 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 992 AKLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAE---------LGVRADVEAEERARIRR 1062
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEGSPHVETIEEDRERV 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1063 DELNAQLSQSRNRKSELEKGLTSIElemkslvkTLKKAGKEYTDLRTfvvnakagwmdvlkiaRSSNVEKQLNRREMAYM 1142
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAE--------DLVEAEDRIERLEE----------------RREDLEELIAERRETIE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1143 SAEELRSLSDKSLGALRlavADNETLRDALRASEDIARPERKVlfyVAVYQHLR----------ERIRHDIIRTDDPVEA 1212
Cdd:PRK02224 534 EKRERAEELRERAAELE---AEAEEKREAAAEAEEEAEEAREE---VAELNSKLaelkerieslERIRTLLAAIADAEDE 607
|
410 420
....*....|....*....|....*..
gi 491647617 1213 IEEMEVELARLTEELTQREKRLAISSE 1239
Cdd:PRK02224 608 IERLREKREALAELNDERRERLAEKRE 634
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
782-1100 |
2.59e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 782 AAREHRLETLREKREELVENYAKASFDAQKLQRLTQsfnqfvsnhmnvafNEDPEAALKDLREQRSNVQRQLAQLRESEQ 861
Cdd:COG4717 91 AELQEELEELEEELEELEAELEELREELEKLEKLLQ--------------LLPLYQELEALEAELAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 862 QVRSQLTGAKEAIALLNKLQHVVNALEDDTLEARLEEVEARLSQADEARHFTREHGKALAELENLVSTLDADPEQFDALS 941
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 942 AAyLQADETLQTLKKTLFALSDLV------------------------------------ERRHHFGYADAVALLDKSSE 985
Cdd:COG4717 237 EA-AALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgllallflllarEKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 986 LNEQLKAKLVDAER-ARTRSREQVKQVREQVNQYNQVLISLKSshQAKQETVAEFKRELAELGVRADVEAEErARIRRDE 1064
Cdd:COG4717 316 LEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEE-ELRAALE 392
|
330 340 350
....*....|....*....|....*....|....*.
gi 491647617 1065 LNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKA 1100
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
282-664 |
3.91e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 3.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 282 RKKLELALQRRGELLGSRRQLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQ-LVQTAVRQQEKVERYQEDLEEL 360
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEqLEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 361 AVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYqqaldmqqtralQYQQAVKALEKAREltgnDALSQENA 440
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS------------RIPEIQAELSKLEE----EVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 441 AEYLaslkakeDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAGEKAreviAKGREFANLAANAEQLTS 520
Cdd:TIGR02169 814 LREI-------EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE----ELEEELEELEAALRDLES 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 521 QHRDLERQMRSLQQAKTLSEQYQRQFNETVtseEAVELEMARQQARLESAEDAVGEQAEKVRELQrrenDINAKAAQFEK 600
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQI---EKKRKRLSELKAKLEALEEELSEIEDPKGEDE----EIPEEELSLED 955
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 491647617 601 VAPAWIAAQEALEKLAEQtgeelydSQAVLDTMQRVMADERETITTRDKLQAEKQALEAEIERL 664
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPV-------NMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
873-1103 |
4.71e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 873 AIALLNKLQHVVNALEDDTLEARLEEVEARLSQADEARHFT-REHGKALAELENLVSTLDADPEQFDALSAAYLQADETL 951
Cdd:COG4942 6 LLALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALkKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 952 QTLKKTLFALSDLVERRHHFgYADAVALLDKSSElNEQLKAKL-----VDAERARTRSREQVKQVREQVNQYNQV---LI 1023
Cdd:COG4942 86 AELEKEIAELRAELEAQKEE-LAELLRALYRLGR-QPPLALLLspedfLDAVRRLQYLKYLAPARREQAEELRADlaeLA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1024 SLKSSHQAKQETVAEFKRELAELGVRADVEAEERARIRRdELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKE 1103
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLA-RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
836-1235 |
8.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 8.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 836 EAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKLQhvvnaleddTLEARLEEVEARLSQADEARHFTR- 914
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELE---------ELEEELEELEAELEELREELEKLEk 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 915 --EHGKALAELENLVSTLDADPEQFDALSA---AYLQADETLQTLKKTLFALSDLVERRHHFGYADAVALLDKSSELNEQ 989
Cdd:COG4717 124 llQLLPLYQELEALEAELAELPERLEELEErleELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 990 LKAKLVDAERARTRSREQVKQVREQVNQynqvlISLKSSHQAKQETVAEFKRELAELGVRADVEAEERARIRRDE----- 1064
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQ-----LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILtiagv 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1065 --------------LNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKAGKEYTDLRTFVVNAKAGWMDVLKIARS-SN 1129
Cdd:COG4717 279 lflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREaEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1130 VEKQLNRREMAYMSAEELRSLSDKSLGALRLAVADNETLRDALRASEDIAR--PERKVLFYVAVYQHLRERIRHDIIRTD 1207
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEqlEELLGELEELLEALDEEELEEELEELE 438
|
410 420
....*....|....*....|....*...
gi 491647617 1208 dpvEAIEEMEVELARLTEELTQREKRLA 1235
Cdd:COG4717 439 ---EELEELEEELEELREELAELEAELE 463
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
315-663 |
9.86e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 9.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 315 ELDALTESQTHLEQDYQAASDHLQLVQTAVRQQEKVEryqedlEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDS 394
Cdd:pfam01576 392 ELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQR------AELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 395 LKTQLADYQQALDMQQTRALQYQQAVKALEKAR----ELTGNDALSQENAAEYLASLkakedaqTSELLSLKHKLDLSSA 470
Cdd:pfam01576 466 LESQLQDTQELLQEETRQKLNLSTRLRQLEDERnslqEQLEEEEEAKRNVERQLSTL-------QAQLSDMKKKLEEDAG 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 471 AAKQFERGLE-LVRSIAGEVSRSDAGEKAREVIAKGRefanlaanaEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNET 549
Cdd:pfam01576 539 TLEALEEGKKrLQRELEALTQQLEEKAAAYDKLEKTK---------NRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQM 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 550 VTSEEAVELEMARQQARlesAEDAVGEQAEKVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAV 629
Cdd:pfam01576 610 LAEEKAISARYAEERDR---AEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERS 686
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 491647617 630 LDTMQRVMADERETITT-RDKLQAEK----------QALEAEIER 663
Cdd:pfam01576 687 KRALEQQVEEMKTQLEElEDELQATEdaklrlevnmQALKAQFER 731
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
769-1304 |
1.01e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 769 RYSRFPKIPLFGRAAREHRLETLREKREELVENYAKASFDAQKLQRLTQSFNQFVSNHMN--VAFNEDPEAALKDLREQ- 845
Cdd:pfam12128 330 QHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNrdIAGIKDKLAKIREARDRq 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 846 ---------------RSNVQRQLAQLRESEQQVRSQLTGAKEAIA-------LLNKLQHVVNALE--DDTLEARLEEVEA 901
Cdd:pfam12128 410 lavaeddlqaleselREQLEAGKLEFNEEEYRLKSRLGELKLRLNqatatpeLLLQLENFDERIEraREEQEAANAEVER 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 902 ---RLSQADEAR-HFTREHGKALAELENLVSTLDADPEQFDALSAAYL-----QADETLQTLKK----TLFALSDLVERR 968
Cdd:pfam12128 490 lqsELRQARKRRdQASEALRQASRRLEERQSALDELELQLFPQAGTLLhflrkEAPDWEQSIGKvispELLHRTDLDPEV 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 969 HHFGYADAVAL----LD-------KSSELNEQLKAKLVDAERARTRSREQVKQVREQVnqynqVLISLKSSHQAKQETVA 1037
Cdd:pfam12128 570 WDGSVGGELNLygvkLDlkridvpEWAASEEELRERLDKAEEALQSAREKQAAAEEQL-----VQANGELEKASREETFA 644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1038 EFKRELAELGVRadveaeeRARIRRDELNAQLSQSR-NRKSELEKGLTSIELEMKSLVKTLKKAGKEYTD-LRTFVVNAK 1115
Cdd:pfam12128 645 RTALKNARLDLR-------RLFDEKQSEKDKKNKALaERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEqKREARTEKQ 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1116 AGWMDV---LKIARSSNVEKQLNRREMAYMSAEELRSLSDKSLGALRL---AVADNET-LRDALRASEDIARPERKVLFY 1188
Cdd:pfam12128 718 AYWQVVegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVdpdVIAKLKReIRTLERKIERIAVRRQEVLRY 797
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1189 VAVYQH--LRERIRHdIIRTDDPVEAIEEMEVELARLTEELtqREKRLAISSESVANiiRKTIQREQNRIRLLNQGLSNI 1266
Cdd:pfam12128 798 FDWYQEtwLQRRPRL-ATQLSNIERAISELQQQLARLIADT--KLRRAKLEMERKAS--EKQQVRLSENLRGLRCEMSKL 872
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 491647617 1267 AFGQV--KGVRLNVSIRETHAQL------LEGLAEKAEQHQDLFGN 1304
Cdd:pfam12128 873 ATLKEdaNSEQAQGSIGERLAQLedlklkRDYLSESVKKYVEHFKN 918
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
301-660 |
1.15e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 301 QLDDFQATFGRMTDELDALTESQTHLEQDYQAASdhLQLVQTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATE---- 376
Cdd:pfam12128 348 QLPSWQSELENLEERLKALTGKHQDVTAKYNRRR--SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALEselr 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 377 -----QLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQqtraLQYQQAVKALEKARELTGNDALSQENAAEYLASLKAKE 451
Cdd:pfam12128 426 eqleaGKLEFNEEEYRLKSRLGELKLRLNQATATPELL----LQLENFDERIERAREEQEAANAEVERLQSELRQARKRR 501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 452 DaQTSELLSLKHK--LDLSSAAAKQFERG-------LELVRSIAGEVSRSDAGEKAREVIAKG--REFANLAANAEQLT- 519
Cdd:pfam12128 502 D-QASEALRQASRrlEERQSALDELELQLfpqagtlLHFLRKEAPDWEQSIGKVISPELLHRTdlDPEVWDGSVGGELNl 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 520 ------------SQHRDLERQMRS--------LQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQAE 579
Cdd:pfam12128 581 ygvkldlkridvPEWAASEEELRErldkaeeaLQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFD 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 580 KVRELQRRENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVMADERETITTRDKLQAEKQALEA 659
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAA 740
|
.
gi 491647617 660 E 660
Cdd:pfam12128 741 R 741
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
833-1100 |
1.29e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 833 EDPEAALKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAI-ALLNKLQHVVNALED--DTLEARLEEVEARLSQADEA 909
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRdELNAQVKELREEAQElrEKRDELNEKVKELKEERDEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 910 RHFTREHGKALAELENLVSTLDADPEQFDALSAAYLQADETLQTLKktlfaLSDLVERRhhfgyadavaLLDKSSELNEQ 989
Cdd:COG1340 84 NEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEV-----LSPEEEKE----------LVEKIKELEKE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 990 LKA--KLVDAERARTRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRELAELGVRAD------VEAEERArir 1061
Cdd:COG1340 149 LEKakKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADelhkeiVEAQEKA--- 225
|
250 260 270
....*....|....*....|....*....|....*....
gi 491647617 1062 rDELNAQLSQSRNRKSELEKGLTSIELEMKSLVKTLKKA 1100
Cdd:COG1340 226 -DELHEEIIELQKELRELRKELKKLRKKQRALKREKEKE 263
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
301-617 |
1.37e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.92 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 301 QLDDFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQQ-----EKVERYQEDLEELAVRLEEQMMVVE--- 372
Cdd:pfam06160 94 LLDDIEEDIKQILEELDELLESEEKNREEVEELKDKYRELRKTLLANrfsygPAIDELEKQLAEIEEEFSQFEELTEsgd 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 373 --EATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTralQYQQAVKALEKAreltgNDALSQENAAEYLASLKak 450
Cdd:pfam06160 174 ylEAREVLEKLEEETDALEELMEDIPPLYEELKTELPDQLE---ELKEGYREMEEE-----GYALEHLNVDKEIQQLE-- 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 451 edAQTSELLSLKHKLDLSSAAakqferglELVRSIAGEVSRS-DAGEK---AREVIAKgrEFANLAANAEQLTSQHRDLE 526
Cdd:pfam06160 244 --EQLEENLALLENLELDEAE--------EALEEIEERIDQLyDLLEKevdAKKYVEK--NLPEIEDYLEHAEEQNKELK 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 527 RQMRSLQQAKTLSE-------QYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQAEKVRELQRRENDInakaaqFE 599
Cdd:pfam06160 312 EELERVQQSYTLNEnelervrGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEEF------KE 385
|
330
....*....|....*...
gi 491647617 600 KVAPAWIAAQEALEKLAE 617
Cdd:pfam06160 386 SLQSLRKDELEAREKLDE 403
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
350-908 |
1.48e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 350 VERYQEDLEELAVRLEEQMMVVEEAT--EQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAVKALE--- 424
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEEKDlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELEtle 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 425 ----KARELTGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVsRSDAGEKARE 500
Cdd:PRK02224 258 aeieDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL-RDRLEECRVA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 501 VIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVtseEAVELEMARQQARLESAEDAVGEQAEK 580
Cdd:PRK02224 337 AQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEI---EELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 581 VRELQRRENDINAKAAQFE-KVAPAWIAAQEALEKLAE----QTGEELYDSQAVldtmqRVMADERETITT----RDKLQ 651
Cdd:PRK02224 414 LEELREERDELREREAELEaTLRTARERVEEAEALLEAgkcpECGQPVEGSPHV-----ETIEEDRERVEEleaeLEDLE 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 652 AEKQALEAEIERLAQPGGSDDaRLQSLADTLggTLLSEIYDDitlddapyfsalygpaRHAIVVPDlkgiKDKLLDLDDC 731
Cdd:PRK02224 489 EEVEEVEERLERAEDLVEAED-RIERLEERR--EDLEELIAE----------------RRETIEEK----RERAEELRER 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 732 PEDLyiiEGDADGFDDSVFDVEELEDAVCV----------HLNDRQLRYSRFPKIpLFGRAAREHRLETLREKREELVE- 800
Cdd:PRK02224 546 AAEL---EAEAEEKREAAAEAEEEAEEAREevaelnsklaELKERIESLERIRTL-LAAIADAEDEIERLREKREALAEl 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 801 NYAKASFDAQKLQRLTQSFNQFvsnhmnvafnedPEAALKDLREQRS-------NVQRQLAQLRESEQQVRSQLTGAKEA 873
Cdd:PRK02224 622 NDERRERLAEKRERKRELEAEF------------DEARIEEAREDKEraeeyleQVEEKLDELREERDDLQAEIGAVENE 689
|
570 580 590
....*....|....*....|....*....|....*
gi 491647617 874 IALLNKLQHvvnalEDDTLEARLEEVEARLSQADE 908
Cdd:PRK02224 690 LEELEELRE-----RREALENRVEALEALYDEAEE 719
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
282-465 |
1.80e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 282 RKKLELALQRRGELlgsRRQLDDFQATFGRMTDELDALTESQTHLE--QDYQAAS-DHLQLVQTAVRQQEKVERYQE--- 355
Cdd:COG4913 609 RAKLAALEAELAEL---EEELAEAEERLEALEAELDALQERREALQrlAEYSWDEiDVASAEREIAELEAELERLDAssd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 356 DLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAvkALEKAREltgnDAL 435
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLEERFA----AAL 759
|
170 180 190
....*....|....*....|....*....|
gi 491647617 436 SQENAAEYLASLKAKEDAQTSELLSLKHKL 465
Cdd:COG4913 760 GDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
810-967 |
1.99e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 810 QKLQRLTQSFNQFVSNHMNVAFNEDPEAA---LKDLREQRSNVQRQLAQLRESEQQVRSQLTGAKEAIALLNKLQHVVNa 886
Cdd:COG3206 189 KELEEAEAALEEFRQKNGLVDLSEEAKLLlqqLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQ- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 887 leddtLEARLEEVEARLsqADEARHFTREHGK---ALAELENLVSTLDADPEQ-FDALSAAYLQADETLQTLKKTLFALS 962
Cdd:COG3206 268 -----LRAQLAELEAEL--AELSARYTPNHPDviaLRAQIAALRAQLQQEAQRiLASLEAELEALQAREASLQAQLAQLE 340
|
....*
gi 491647617 963 DLVER 967
Cdd:COG3206 341 ARLAE 345
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
836-967 |
2.56e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.15 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 836 EAALKDLREQRSNVQRQLAQLRESEQQVRsqltgaKEAIALLNKLQHVVNALEDDtlearleevearlsqadeaRHftrE 915
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEEKNR------EEVEELKDKYRELRKTLLAN-------------------RF---S 143
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 491647617 916 HGKALAELENLVSTLDADPEQFDALSAA--YLQADETLQTLKKTLFALSDLVER 967
Cdd:pfam06160 144 YGPAIDELEKQLAEIEEEFSQFEELTESgdYLEAREVLEKLEEETDALEELMED 197
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
832-1071 |
2.59e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 832 NEDPEAALKDLREQRSNVQRQLAQLRESEQ---QVRSQLTGA----KEAIALLNKLQHVVNA--------LEDDTLEARL 896
Cdd:PRK11281 51 QKLLEAEDKLVQQDLEQTLALLDKIDRQKEeteQLKQQLAQApaklRQAQAELEALKDDNDEetretlstLSLRQLESRL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 897 EEVEARLSQADEarhftrehgkALAELENLVSTLDADPEQFD-ALSAAYLQADETLQTLKKTLFALSDLVERRHHFgYAD 975
Cdd:PRK11281 131 AQTLDQLQNAQN----------DLAEYNSQLVSLQTQPERAQaALYANSQRLQQIRNLLKGGKVGGKALRPSQRVL-LQA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 976 AVALLDKSSELNEQLKA---KLVDAERArtrsreQVKQVREQVNQynqvlisLKSSHQAKQETVAEFKRELAELGVRADV 1052
Cdd:PRK11281 200 EQALLNAQNDLQRKSLEgntQLQDLLQK------QRDYLTARIQR-------LEHQLQLLQEAINSKRLTLSEKTVQEAQ 266
|
250 260
....*....|....*....|....*.
gi 491647617 1053 EAEERARIRRD-------ELNAQLSQ 1071
Cdd:PRK11281 267 SQDEAARIQANplvaqelEINLQLSQ 292
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
328-574 |
3.42e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 328 QDYQAASDHLQLVQTAVRQQEKVERYQEDLEELAVRLEEQMmvveeATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALD 407
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFR-----QKNGLVDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 408 MQQTRALQYQQAVKalekarelTGNDALSQENAAEYLASLKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRS-IA 486
Cdd:COG3206 237 EAEARLAALRAQLG--------SGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 487 GEVSRSDAGEKAREVIAKGREfANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQAR 566
Cdd:COG3206 309 QEAQRILASLEAELEALQARE-ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGN 387
|
....*...
gi 491647617 567 LESAEDAV 574
Cdd:COG3206 388 VRVIDPAV 395
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
280-666 |
5.13e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 280 ERRKKLElalQRRGELLGSRRQLD----DFQATFGRMTDELDALTESQTHLEQDYQAASDHLQLVQTAVRQQEKVERyqe 355
Cdd:pfam01576 194 ERLKKEE---KGRQELEKAKRKLEgestDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIR--- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 356 dleELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQTRALQYQQAVKALEKAREltgndal 435
Cdd:pfam01576 268 ---ELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALE------- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 436 sqenaaeylaSLKAKEDAQTSElLSLKHkldlsSAAAKQFERGLELVRsiagevsrsdagekareviakgREFANLAANA 515
Cdd:pfam01576 338 ----------EETRSHEAQLQE-MRQKH-----TQALEELTEQLEQAK----------------------RNKANLEKAK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 516 EQLTSQHRDLERQMRSLQQAKTLSEQYQRQfnetvtseeaVELEMARQQARLESAEDAVGEQAEKVRELQRRENDINAKA 595
Cdd:pfam01576 380 QALESENAELQAELRTLQQAKQDSEHKRKK----------LEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLL 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 596 AQFEK--------VAPAWIAAQEALEKLAEQTGEELydsqaVLDTMQRVMADERETITTRDKLQAE-KQALEAEIERLAQ 666
Cdd:pfam01576 450 NEAEGkniklskdVSSLESQLQDTQELLQEETRQKL-----NLSTRLRQLEDERNSLQEQLEEEEEaKRNVERQLSTLQA 524
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
332-639 |
5.55e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 332 AASDHLQLVQTAVRQQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDMQQT 411
Cdd:TIGR00606 813 AKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVE 892
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 412 RALQYQQAVKALEKARELTGNDAlsqenaaeylaslKAKEDAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAG---E 488
Cdd:TIGR00606 893 LSTEVQSLIREIKDAKEQDSPLE-------------TFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGymkD 959
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 489 VSRSDAGEKAREVIAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVT----SEEAVELEMARQQ 564
Cdd:TIGR00606 960 IENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTlrkrENELKEVEEELKQ 1039
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 565 ARLESAEDAVGEQA-------EKVRELQRRENDINAKAAQFEKvaPAWIAAQEALEKLAEQTGEELYDSQAVLDTMQRVM 637
Cdd:TIGR00606 1040 HLKEMGQMQVLQMKqehqkleENIDLIKRNHVLALGRQKGYEK--EIKHFKKELREPQFRDAEEKYREMMIVMRTTELVN 1117
|
..
gi 491647617 638 AD 639
Cdd:TIGR00606 1118 KD 1119
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
499-623 |
5.77e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 499 REVIAKGREFANLAANAEQLTSQHRDLERQMRSL----QQAKTLSEQYQRQFNETVTSEE--AVELEMARQQARLESAED 572
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLeleiEEVEARIKKYEEQLGNVRNNKEyeALQKEIESLKRRISDLED 110
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 491647617 573 AVGEQAEKVRELqrrENDINAKAAQFEKVAPAWIAAQEALEKLAEQTGEEL 623
Cdd:COG1579 111 EILELMERIEEL---EEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
346-578 |
7.28e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 346 QQEKVERYQEDLEELAVRLEEQMMVVEEATEQLSMAEEQAHLSEEEVDSLKTQLADYQQALDmQQTRALQyQQAVKALEK 425
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIE-ERREELG-ERARALYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 426 ARELTGNDA-LSQENAAEYLASLKAKE---DAQTSELLSLKHKLDLSSAAAKQFERGLELVRSIAGEVSRSDAgEKAREV 501
Cdd:COG3883 99 GGSVSYLDVlLGSESFSDFLDRLSALSkiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA-ELEAQQ 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491647617 502 IAKGREFANLAANAEQLTSQHRDLERQMRSLQQAKTLSEQYQRQFNETVTSEEAVELEMARQQARLESAEDAVGEQA 578
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
792-1266 |
7.41e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 7.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 792 REKREELVENYAKASFDAQKlqRLTQSfnqfvsnhmnvafNEDPEAALKDLREQRSNVQRQLAQL---RESEQQVRSQLT 868
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQR--RLNES-------------NELHEKQKFYLRQSVIDLQTKLQEMqmeRDAMADIRRRES 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 869 GAKEAiaLLNKLQHVVNALE------DDTLE---ARLEEVEARLSQADEARH--------FTREHGKALAELENLvSTLD 931
Cdd:pfam15921 138 QSQED--LRNQLQNTVHELEaakclkEDMLEdsnTQIEQLRKMMLSHEGVLQeirsilvdFEEASGKKIYEHDSM-STMH 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 932 ADpEQFDALSAAYLQADETLQTLKKTLFALSDLVERRHHFGYADAVALLDKSSELNEQLkakLVDAERARTRSREQVKQV 1011
Cdd:pfam15921 215 FR-SLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQL---ISEHEVEITGLTEKASSA 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1012 REQVNqynqvlislksSHQAKQETVAEFKRELAELGVRADVEAEERARIRRDELNAQLSQSRNRKSELEKGLTSIELEMK 1091
Cdd:pfam15921 291 RSQAN-----------SIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1092 SLVKTLKKAGKEYTDLRTFVVNAKAgwmDVLKIARSSNVEKQLNRREMAYMSAEEL------RSLSDKSLGALRLavadn 1165
Cdd:pfam15921 360 EARTERDQFSQESGNLDDQLQKLLA---DLHKREKELSLEKEQNKRLWDRDTGNSItidhlrRELDDRNMEVQRL----- 431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1166 ETLRDALRaSEDIARPERKvlfyVAVYQHLRERIrHDIIRTDDPVEAIEEMeveLARLTEELTQREKRLAISSESVANII 1245
Cdd:pfam15921 432 EALLKAMK-SECQGQMERQ----MAAIQGKNESL-EKVSSLTAQLESTKEM---LRKVVEELTAKKMTLESSERTVSDLT 502
|
490 500
....*....|....*....|.
gi 491647617 1246 rKTIQREQNRIRLLNQGLSNI 1266
Cdd:pfam15921 503 -ASLQEKERAIEATNAEITKL 522
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
854-1099 |
9.57e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 854 AQLRESEQQVRS---QLTGAKEAIALLNKLQHVVNALEDDTLeARLEEVEARLsqADEARHFTREHGKALAELENLVSTL 930
Cdd:PHA02562 174 DKIRELNQQIQTldmKIDHIQQQIKTYNKNIEEQRKKNGENI-ARKQNKYDEL--VEEAKTIKAEIEELTDELLNLVMDI 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 931 DADPEQFDALSAAYLQADETLQTLKKtlfalsdlVERRHHFG---------YADAVALLDKSSELNEQLKAKLVDAERAR 1001
Cdd:PHA02562 251 EDPSAALNKLNTAAAKIKSKIEQFQK--------VIKMYEKGgvcptctqqISEGPDRITKIKDKLKELQHSLEKLDTAI 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 1002 TRSREQVKQVREQVNQYNQVLISLKSSHQAKQETVAEFKRelaelgVRADVEAEERARIRRDE----LNAQLSQSRNRKS 1077
Cdd:PHA02562 323 DELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKK------VKAAIEELQAEFVDNAEelakLQDELDKIVKTKS 396
|
250 260
....*....|....*....|..
gi 491647617 1078 ELEKgltsiELEMKSLVKTLKK 1099
Cdd:PHA02562 397 ELVK-----EKYHRGIVTDLLK 413
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
842-1046 |
9.65e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 9.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 842 LREQRSNVQRQLAQLRESEQQVRSQLTGAKEAI-ALLNKLQHVVNALEDDTLEARLEEVEARLSQADEArhftrehgkaL 920
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALeEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAE----------L 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491647617 921 AELENLVSTLDADPEQfDALSAAYLQADETLQTLKKTLFAL-SDLVERRHHFG--YADAVALLDKSSELNEQLKAKlvdA 997
Cdd:COG3206 236 AEAEARLAALRAQLGS-GPDALPELLQSPVIQQLRAQLAELeAELAELSARYTpnHPDVIALRAQIAALRAQLQQE---A 311
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 491647617 998 ERARTRSREQVKQVREQVNQYNQVLISLKsshqAKQETVAEFKRELAEL 1046
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLE----ARLAELPELEAELRRL 356
|
|
| |
