|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05571 |
PRK05571 |
ribose-5-phosphate isomerase B; Provisional |
1-149 |
9.83e-86 |
|
ribose-5-phosphate isomerase B; Provisional
Pssm-ID: 235509 Cd Length: 148 Bit Score: 247.38 E-value: 9.83e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYEKTG 149
Cdd:PRK05571 81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEF-EGGRHQRRIDKIDEYEAQK 148
|
|
| RpiB |
COG0698 |
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ... |
1-149 |
3.37e-74 |
|
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway
Pssm-ID: 440462 Cd Length: 149 Bit Score: 218.42 E-value: 3.37e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTYDPaDDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:COG0698 1 MKIAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSEDS-VDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKVP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYEKTG 149
Cdd:COG0698 80 GIRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEF-EGGRHQRRVDKISELEKEN 147
|
|
| rpiB_lacA_lacB |
TIGR00689 |
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ... |
3-148 |
9.10e-68 |
|
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.
Pssm-ID: 129772 Cd Length: 144 Bit Score: 202.22 E-value: 9.10e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 3 IYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHtYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVKGA 82
Cdd:TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTL-YDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGI 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491654389 83 RCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYEKT 148
Cdd:TIGR00689 80 RAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQF-EGGRHQRRIDKIIEYERE 144
|
|
| LacAB_rpiB |
pfam02502 |
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ... |
3-138 |
5.41e-65 |
|
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Pssm-ID: 460573 Cd Length: 134 Bit Score: 194.53 E-value: 5.41e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 3 IYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTyDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVKGA 82
Cdd:pfam02502 1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYS-EESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGI 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 491654389 83 RCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRR 138
Cdd:pfam02502 80 RAALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEF-EGGRHQRR 134
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05571 |
PRK05571 |
ribose-5-phosphate isomerase B; Provisional |
1-149 |
9.83e-86 |
|
ribose-5-phosphate isomerase B; Provisional
Pssm-ID: 235509 Cd Length: 148 Bit Score: 247.38 E-value: 9.83e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYEKTG 149
Cdd:PRK05571 81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEF-EGGRHQRRIDKIDEYEAQK 148
|
|
| RpiB |
COG0698 |
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ... |
1-149 |
3.37e-74 |
|
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway
Pssm-ID: 440462 Cd Length: 149 Bit Score: 218.42 E-value: 3.37e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTYDPaDDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:COG0698 1 MKIAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSEDS-VDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKVP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYEKTG 149
Cdd:COG0698 80 GIRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEF-EGGRHQRRVDKISELEKEN 147
|
|
| rpiB_lacA_lacB |
TIGR00689 |
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ... |
3-148 |
9.10e-68 |
|
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.
Pssm-ID: 129772 Cd Length: 144 Bit Score: 202.22 E-value: 9.10e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 3 IYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHtYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVKGA 82
Cdd:TIGR00689 1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTL-YDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGI 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 491654389 83 RCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYEKT 148
Cdd:TIGR00689 80 RAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQF-EGGRHQRRIDKIIEYERE 144
|
|
| LacAB_rpiB |
pfam02502 |
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ... |
3-138 |
5.41e-65 |
|
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Pssm-ID: 460573 Cd Length: 134 Bit Score: 194.53 E-value: 5.41e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 3 IYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTyDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVKGA 82
Cdd:pfam02502 1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYS-EESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGI 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 491654389 83 RCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRR 138
Cdd:pfam02502 80 RAALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEF-EGGRHQRR 134
|
|
| RPI_actino |
TIGR02133 |
ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily ... |
1-148 |
1.49e-64 |
|
ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Pssm-ID: 273989 Cd Length: 148 Bit Score: 194.21 E-value: 1.49e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:TIGR02133 1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVK 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWSEEERHQRRIDILAEYEKT 148
Cdd:TIGR02133 81 GARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDARSRHARRIDSISEYEGD 148
|
|
| PTZ00215 |
PTZ00215 |
ribose 5-phosphate isomerase; Provisional |
1-146 |
1.39e-35 |
|
ribose 5-phosphate isomerase; Provisional
Pssm-ID: 185516 Cd Length: 151 Bit Score: 120.51 E-value: 1.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGH--DVVDCGAHTYDPADdYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANK 78
Cdd:PTZ00215 3 KKVAIGSDHAGFDLKNEIIDYIKNKGKeyKIEDMGTYTAESVD-YPDFAEKVCEEVLKGEADTGILVCGSGIGISIAANK 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 491654389 79 VKGARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYE 146
Cdd:PTZ00215 82 VKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPF-EGGRHTERIDKISAIE 148
|
|
| rpiB |
TIGR01120 |
ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate ... |
2-146 |
2.19e-28 |
|
ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate pathway. [Energy metabolism, Pentose phosphate pathway]
Pssm-ID: 130190 Cd Length: 143 Bit Score: 101.92 E-value: 2.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 2 RIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGAHTYDPADdYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVKG 81
Cdd:TIGR01120 1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTD-YPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 491654389 82 ARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDILAEYE 146
Cdd:TIGR01120 80 IRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQF-EGGRHQQRVEAITAIE 143
|
|
| PRK08622 |
PRK08622 |
galactose-6-phosphate isomerase subunit LacB; Reviewed |
1-148 |
2.35e-27 |
|
galactose-6-phosphate isomerase subunit LacB; Reviewed
Pssm-ID: 181506 Cd Length: 171 Bit Score: 100.11 E-value: 2.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGahTYDPA-DDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKV 79
Cdd:PRK08622 1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVG--TYDFTrTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 491654389 80 KGARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWSEEERHQRRIDILAEYEKT 148
Cdd:PRK08622 79 PGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKPTEENKKLIEKIDHLEKP 147
|
|
| PRK08621 |
PRK08621 |
galactose-6-phosphate isomerase subunit LacA; Reviewed |
1-142 |
7.29e-27 |
|
galactose-6-phosphate isomerase subunit LacA; Reviewed
Pssm-ID: 181505 Cd Length: 142 Bit Score: 98.24 E-value: 7.29e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCgahTYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:PRK08621 1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDV---TEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIK 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDIL 142
Cdd:PRK08621 78 GMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKY-DGGRHQIRVDML 138
|
|
| PRK12615 |
PRK12615 |
galactose-6-phosphate isomerase subunit LacB; Reviewed |
1-156 |
5.50e-22 |
|
galactose-6-phosphate isomerase subunit LacB; Reviewed
Pssm-ID: 171610 Cd Length: 171 Bit Score: 86.62 E-value: 5.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDCGahTYDPA-DDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKV 79
Cdd:PRK12615 1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCG--TYDHTrTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVNKV 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 491654389 80 KGARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWSEEERHQRRIDILAEYEKTGVAPELPE 156
Cdd:PRK12615 79 PGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKETEENKKLIAKIAHLESHHANQEDPD 155
|
|
| PRK12613 |
PRK12613 |
galactose-6-phosphate isomerase subunit LacA; Provisional |
1-142 |
6.57e-21 |
|
galactose-6-phosphate isomerase subunit LacA; Provisional
Pssm-ID: 171609 Cd Length: 141 Bit Score: 82.67 E-value: 6.57e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491654389 1 MRIYLGADHAGFEMKNLIKAHLEKAGHDVVDcgahTYDPADDYPAFCIEAASRTVADPGSLGIVLGGSGNGEQIAANKVK 80
Cdd:PRK12613 1 MAIILGADAHGNALKELIKSFLQEEGYDIID----VTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLK 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 491654389 81 GARCALAWSVETAKLAREHNNAQLIGLGGRMHSEEEALAIVDAFVSQPWsEEERHQRRIDIL 142
Cdd:PRK12613 77 GMVAAEVSDERSAYMTRGHNNARMITMGAEIVGPELAKNIAKGFVTGPY-DGGRHQIRVDML 137
|
|
|