Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
8-401
2.01e-130
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.
The actual alignment was detected with superfamily member TIGR03136:
Pssm-ID: 445116 Cd Length: 399 Bit Score: 380.68 E-value: 2.01e-130
Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit; Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 188287 Cd Length: 399 Bit Score: 380.68 E-value: 2.01e-130
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
41-401
2.92e-120
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.
Pssm-ID: 427626 Cd Length: 344 Bit Score: 352.52 E-value: 2.92e-120
Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit; Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 188287 Cd Length: 399 Bit Score: 380.68 E-value: 2.01e-130
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral ...
41-401
2.92e-120
Na+-transporting oxaloacetate decarboxylase beta subunit; Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.
Pssm-ID: 427626 Cd Length: 344 Bit Score: 352.52 E-value: 2.92e-120
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits ...
47-396
9.80e-48
sodium ion-translocating decarboxylase, beta subunit; This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane. [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]
Pssm-ID: 130179 Cd Length: 354 Bit Score: 166.11 E-value: 9.80e-48
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
or click on the triangles, if present, that represent functional sites (conserved features)
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
(labeled illustration) Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance.
(labeled illustration) Four types of hits can be shown, as available,
for each region on the query sequence:
specific hits meet or exceed a domain-specific e-value threshold
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits
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the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains
Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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