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Conserved domains on  [gi|492088563|ref|WP_005744196|]
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MULTISPECIES: RcnB family protein [Pseudomonas]

Protein Classification

RcnB family protein( domain architecture ID 10009312)

RcnB family protein similar to Escherichia coli nickel/cobalt homeostasis protein RcnB that may act by modulating RcnA-mediated export of nickel and cobalt ions to avoid excess efflux

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
1-98 2.95e-17

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


:

Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 70.90  E-value: 2.95e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492088563   1 MNsKSLIACMTLLGCFSAVTLPAHAETADP----------------------KVTESKDNMHELEIGSRVPEKYRRSDLE 58
Cdd:COG5455    1 MK-KKLIILALLAASLLAAASAAFAQPPGPdrrghdrrrddrhddpghrdkhRGAGPGEDYKRWRRGDRLPPEYRGRRYV 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 492088563  59 VKDWKSKGLEAPAKESEWVKINDKYVRFQKVNGNIMDIVP 98
Cdd:COG5455   80 VNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVL 119
 
Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
1-98 2.95e-17

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 70.90  E-value: 2.95e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492088563   1 MNsKSLIACMTLLGCFSAVTLPAHAETADP----------------------KVTESKDNMHELEIGSRVPEKYRRSDLE 58
Cdd:COG5455    1 MK-KKLIILALLAASLLAAASAAFAQPPGPdrrghdrrrddrhddpghrdkhRGAGPGEDYKRWRRGDRLPPEYRGRRYV 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 492088563  59 VKDWKSKGLEAPAKESEWVKINDKYVRFQKVNGNIMDIVP 98
Cdd:COG5455   80 VNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVL 119
RcnB pfam11776
Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is ...
 45-95 2.20e-15

Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.


Pssm-ID: 432066  Cd Length: 51  Bit Score: 64.12  E-value: 2.20e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 492088563   45 GSRVPEKYRRSDLEVKDWKSKGLEAPAKESEWVKINDKYVRFQKVNGNIMD 95
Cdd:pfam11776   1 GDRLPPEYRGRRYVVDDYRRYHLPAPPRGYHWVRIGGDYVLVAIATGRIVD 51
PTZ00127 PTZ00127
cytochrome c oxidase assembly protein; Provisional
 53-93 6.11e-03

cytochrome c oxidase assembly protein; Provisional


Pssm-ID: 240283  Cd Length: 403  Bit Score: 34.26  E-value: 6.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 492088563  53 RRSDLEVKDWKSKGLEAPAKESEWVKINDKYVRF---QKVNGNI 93
Cdd:PTZ00127  89 TESGLSMTDWKFIGVKPPITQEEWEKEFDKYKQFpeyKQVHYGM 132
 
Name Accession Description Interval E-value
RcnB COG5455
Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];
1-98 2.95e-17

Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism];


Pssm-ID: 444206 [Multi-domain]  Cd Length: 121  Bit Score: 70.90  E-value: 2.95e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492088563   1 MNsKSLIACMTLLGCFSAVTLPAHAETADP----------------------KVTESKDNMHELEIGSRVPEKYRRSDLE 58
Cdd:COG5455    1 MK-KKLIILALLAASLLAAASAAFAQPPGPdrrghdrrrddrhddpghrdkhRGAGPGEDYKRWRRGDRLPPEYRGRRYV 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 492088563  59 VKDWKSKGLEAPAKESEWVKINDKYVRFQKVNGNIMDIVP 98
Cdd:COG5455   80 VNDWRRYGLPAPPRGYHWVRVGGDYVLVAIATGIIVSIVL 119
RcnB pfam11776
Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is ...
 45-95 2.20e-15

Nickel/cobalt transporter regulator; RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.


Pssm-ID: 432066  Cd Length: 51  Bit Score: 64.12  E-value: 2.20e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 492088563   45 GSRVPEKYRRSDLEVKDWKSKGLEAPAKESEWVKINDKYVRFQKVNGNIMD 95
Cdd:pfam11776   1 GDRLPPEYRGRRYVVDDYRRYHLPAPPRGYHWVRIGGDYVLVAIATGRIVD 51
PTZ00127 PTZ00127
cytochrome c oxidase assembly protein; Provisional
 53-93 6.11e-03

cytochrome c oxidase assembly protein; Provisional


Pssm-ID: 240283  Cd Length: 403  Bit Score: 34.26  E-value: 6.11e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 492088563  53 RRSDLEVKDWKSKGLEAPAKESEWVKINDKYVRF---QKVNGNI 93
Cdd:PTZ00127  89 TESGLSMTDWKFIGVKPPITQEEWEKEFDKYKQFpeyKQVHYGM 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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