MULTISPECIES: AlpA family transcriptional regulator [Bacteria]
helix-turn-helix transcriptional regulator( domain architecture ID 10007181)
helix-turn-helix DNA-binding protein similar to Mycobacterium phage excisionase, which is necessary for the excision of prophage from the host genome by site-specific recombination at the attachment site
List of domain hits
Name | Accession | Description | Interval | E-value | ||
AlpA | COG3311 | DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; |
38-98 | 1.20e-08 | ||
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; : Pssm-ID: 442540 [Multi-domain] Cd Length: 64 Bit Score: 47.62 E-value: 1.20e-08
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Name | Accession | Description | Interval | E-value | ||
AlpA | COG3311 | DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; |
38-98 | 1.20e-08 | ||
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; Pssm-ID: 442540 [Multi-domain] Cd Length: 64 Bit Score: 47.62 E-value: 1.20e-08
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HTH_17 | pfam12728 | Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. |
45-96 | 1.85e-08 | ||
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. Pssm-ID: 463684 [Multi-domain] Cd Length: 51 Bit Score: 46.68 E-value: 1.85e-08
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excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
49-92 | 3.61e-07 | ||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] Pssm-ID: 200128 Cd Length: 49 Bit Score: 43.36 E-value: 3.61e-07
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Name | Accession | Description | Interval | E-value | ||
AlpA | COG3311 | DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; |
38-98 | 1.20e-08 | ||
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; Pssm-ID: 442540 [Multi-domain] Cd Length: 64 Bit Score: 47.62 E-value: 1.20e-08
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HTH_17 | pfam12728 | Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. |
45-96 | 1.85e-08 | ||
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. Pssm-ID: 463684 [Multi-domain] Cd Length: 51 Bit Score: 46.68 E-value: 1.85e-08
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excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
49-92 | 3.61e-07 | ||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] Pssm-ID: 200128 Cd Length: 49 Bit Score: 43.36 E-value: 3.61e-07
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Blast search parameters | ||||
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