NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|492369489|ref|WP_005822937|]
View 

MULTISPECIES: transcriptional regulator [Pasteurellaceae]

Protein Classification

transcriptional regulator( domain architecture ID 10007349)

helix-turn-helix-type transcriptional regulator, similar Haemophilus influenzae mu-like prophage FluMu DNA-binding protein Ner

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SfsB COG3423
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
10-77 1.54e-33

Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];


:

Pssm-ID: 442649 [Multi-domain]  Cd Length: 69  Bit Score: 109.92  E-value: 1.54e-33
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492369489 10 TAQDWHRADIIAALHKAGWSLRQLSLQHGYSQaSTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFA 77
Cdd:COG3423   3 KKKDWHPADIKAALRKRGTSLAALAREAGLSS-STLSNALTRPWPKGERAIAEALGVPPEEIWPSRYA 69
 
Name Accession Description Interval E-value
SfsB COG3423
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
10-77 1.54e-33

Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];


Pssm-ID: 442649 [Multi-domain]  Cd Length: 69  Bit Score: 109.92  E-value: 1.54e-33
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492369489 10 TAQDWHRADIIAALHKAGWSLRQLSLQHGYSQaSTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFA 77
Cdd:COG3423   3 KKKDWHPADIKAALRKRGTSLAALAREAGLSS-STLSNALTRPWPKGERAIAEALGVPPEEIWPSRYA 69
HTH_35 pfam13693
Winged helix-turn-helix DNA-binding;
13-80 4.71e-33

Winged helix-turn-helix DNA-binding;


Pssm-ID: 433408  Cd Length: 70  Bit Score: 108.86  E-value: 4.71e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492369489  13 DWHRADIIAALHKAGWSLRQLSLQHGYSQaSTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFAQRS 80
Cdd:pfam13693  1 DWHPADIKAALRKRGTTLAALSRSAGLSS-STLSNALTRPWPKGERIIAEALGVPPEEIWPSRYFDDT 67
PRK10344 PRK10344
DNA-binding transcriptional regulator SfsB;
13-88 5.75e-19

DNA-binding transcriptional regulator SfsB;


Pssm-ID: 182394  Cd Length: 92  Bit Score: 73.84  E-value: 5.75e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492369489 13 DWHRADIIAALHKAGWSLRQLSLQHGYSqASTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFAQRSLKKFAERT 88
Cdd:PRK10344  7 DWHPADIIAGLRKKGTSMAAESRRNGLS-SSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRT 81
 
Name Accession Description Interval E-value
SfsB COG3423
Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];
10-77 1.54e-33

Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription];


Pssm-ID: 442649 [Multi-domain]  Cd Length: 69  Bit Score: 109.92  E-value: 1.54e-33
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492369489 10 TAQDWHRADIIAALHKAGWSLRQLSLQHGYSQaSTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFA 77
Cdd:COG3423   3 KKKDWHPADIKAALRKRGTSLAALAREAGLSS-STLSNALTRPWPKGERAIAEALGVPPEEIWPSRYA 69
HTH_35 pfam13693
Winged helix-turn-helix DNA-binding;
13-80 4.71e-33

Winged helix-turn-helix DNA-binding;


Pssm-ID: 433408  Cd Length: 70  Bit Score: 108.86  E-value: 4.71e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492369489  13 DWHRADIIAALHKAGWSLRQLSLQHGYSQaSTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFAQRS 80
Cdd:pfam13693  1 DWHPADIKAALRKRGTTLAALSRSAGLSS-STLSNALTRPWPKGERIIAEALGVPPEEIWPSRYFDDT 67
PRK10344 PRK10344
DNA-binding transcriptional regulator SfsB;
13-88 5.75e-19

DNA-binding transcriptional regulator SfsB;


Pssm-ID: 182394  Cd Length: 92  Bit Score: 73.84  E-value: 5.75e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492369489 13 DWHRADIIAALHKAGWSLRQLSLQHGYSqASTLKNALDRPWRKGEQIIADAIGVPPEEIWAGRFAQRSLKKFAERT 88
Cdd:PRK10344  7 DWHPADIIAGLRKKGTSMAAESRRNGLS-SSTLANALSRPWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRT 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH