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Conserved domains on  [gi|492422381|ref|WP_005839054|]
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MULTISPECIES: calycin-like domain-containing protein [Bacteroidaceae]

Protein Classification

calycin-like domain-containing protein( domain architecture ID 10622337)

calycin-like domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calycin_like pfam13944
Calycin-like beta-barrel domain;
37-153 4.52e-21

Calycin-like beta-barrel domain;


:

Pssm-ID: 433597  Cd Length: 121  Bit Score: 82.39  E-value: 4.52e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492422381   37 AGIYNGTLSLSVSGNDQGTSDSQ-VKITAEEGGTVQVLLVGGAGEGMMsLPDIAIPGIKVHTSDNVTYILPESAVDVTV- 114
Cdd:pfam13944   1 AGTYTGTLSVSVGGSDPPPDPDQkVTITKNGDGTVNLSLKNFSFGGMP-LGDITVDNVPVTESGNGYVTFSGSQTVTLAg 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 492422381  115 --GSVKYTGSLQGTIKDEKADLIFTLKPG-AMPMAITATFVG 153
Cdd:pfam13944  80 ggGSDKATVSLNGTISGGKLNATITIDVGgGMPMPIKVTFKG 121
 
Name Accession Description Interval E-value
Calycin_like pfam13944
Calycin-like beta-barrel domain;
37-153 4.52e-21

Calycin-like beta-barrel domain;


Pssm-ID: 433597  Cd Length: 121  Bit Score: 82.39  E-value: 4.52e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492422381   37 AGIYNGTLSLSVSGNDQGTSDSQ-VKITAEEGGTVQVLLVGGAGEGMMsLPDIAIPGIKVHTSDNVTYILPESAVDVTV- 114
Cdd:pfam13944   1 AGTYTGTLSVSVGGSDPPPDPDQkVTITKNGDGTVNLSLKNFSFGGMP-LGDITVDNVPVTESGNGYVTFSGSQTVTLAg 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 492422381  115 --GSVKYTGSLQGTIKDEKADLIFTLKPG-AMPMAITATFVG 153
Cdd:pfam13944  80 ggGSDKATVSLNGTISGGKLNATITIDVGgGMPMPIKVTFKG 121
 
Name Accession Description Interval E-value
Calycin_like pfam13944
Calycin-like beta-barrel domain;
37-153 4.52e-21

Calycin-like beta-barrel domain;


Pssm-ID: 433597  Cd Length: 121  Bit Score: 82.39  E-value: 4.52e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492422381   37 AGIYNGTLSLSVSGNDQGTSDSQ-VKITAEEGGTVQVLLVGGAGEGMMsLPDIAIPGIKVHTSDNVTYILPESAVDVTV- 114
Cdd:pfam13944   1 AGTYTGTLSVSVGGSDPPPDPDQkVTITKNGDGTVNLSLKNFSFGGMP-LGDITVDNVPVTESGNGYVTFSGSQTVTLAg 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 492422381  115 --GSVKYTGSLQGTIKDEKADLIFTLKPG-AMPMAITATFVG 153
Cdd:pfam13944  80 ggGSDKATVSLNGTISGGKLNATITIDVGgGMPMPIKVTFKG 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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