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Conserved domains on  [gi|492444998|ref|WP_005846507|]
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MULTISPECIES: hypothetical protein [Phocaeicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjjP super family cl26301
Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown];
1-45 6.45e-06

Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown];


The actual alignment was detected with superfamily member COG2966:

Pssm-ID: 442206 [Multi-domain]  Cd Length: 409  Bit Score: 41.46  E-value: 6.45e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492444998   1 MDKTAETLIDVSGFISEYSAHMMGCGVHTSRVIRSANRIGESFGY 45
Cdd:COG2966    1 MSEDEAELREVLDLALRAGELLLESGAETYRVEDTMLRIAAALGL 45
 
Name Accession Description Interval E-value
YjjP COG2966
Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown];
1-45 6.45e-06

Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown];


Pssm-ID: 442206 [Multi-domain]  Cd Length: 409  Bit Score: 41.46  E-value: 6.45e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492444998   1 MDKTAETLIDVSGFISEYSAHMMGCGVHTSRVIRSANRIGESFGY 45
Cdd:COG2966    1 MSEDEAELREVLDLALRAGELLLESGAETYRVEDTMLRIAAALGL 45
PRK12546 PRK12546
RNA polymerase sigma factor; Provisional
 5-41 1.62e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 139055 [Multi-domain]  Cd Length: 188  Bit Score: 34.43  E-value: 1.62e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 492444998   5 AETLIDVSGFISEYSAHMMGCGVHT--SRVIRSANRIGE 41
Cdd:PRK12546 121 ALILVGASGFSYEEAAEMCGVAVGTvkSRANRARARLAE 159
 
Name Accession Description Interval E-value
YjjP COG2966
Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown];
1-45 6.45e-06

Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown];


Pssm-ID: 442206 [Multi-domain]  Cd Length: 409  Bit Score: 41.46  E-value: 6.45e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 492444998   1 MDKTAETLIDVSGFISEYSAHMMGCGVHTSRVIRSANRIGESFGY 45
Cdd:COG2966    1 MSEDEAELREVLDLALRAGELLLESGAETYRVEDTMLRIAAALGL 45
PRK12546 PRK12546
RNA polymerase sigma factor; Provisional
 5-41 1.62e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 139055 [Multi-domain]  Cd Length: 188  Bit Score: 34.43  E-value: 1.62e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 492444998   5 AETLIDVSGFISEYSAHMMGCGVHT--SRVIRSANRIGE 41
Cdd:PRK12546 121 ALILVGASGFSYEEAAEMCGVAVGTvkSRANRARARLAE 159
PRK12547 PRK12547
RNA polymerase sigma factor; Provisional
 3-41 9.69e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 139056 [Multi-domain]  Cd Length: 164  Bit Score: 32.16  E-value: 9.69e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 492444998   3 KTAETLIDVSGFISEYSAHMMGCGVHT--SRVIRSANRIGE 41
Cdd:PRK12547 118 REAIILIGASGFSYEDAAAICGCAVGTikSRVSRARNRLQE 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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