|
Name |
Accession |
Description |
Interval |
E-value |
| YckC |
COG1714 |
Uncharacterized membrane protein YckC, RDD family [Function unknown]; |
227-386 |
6.03e-31 |
|
Uncharacterized membrane protein YckC, RDD family [Function unknown];
Pssm-ID: 441320 Cd Length: 143 Bit Score: 115.75 E-value: 6.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 227 DAPVVYAGLWRRVAASILDSLITTFAVYLIVIPLVFVVALATtrgdsgsalddgsaMGIALVvmsygIGLAIPTLYFAWM 306
Cdd:COG1714 10 ALELRYAGLGRRLLAFLIDLLILFALLLLLALVLLLGLLGAL--------------LGLLLL-----LGFLVAFLYFVLF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 307 QSSRLQASLGKLACGIKVVKADsnGARVGFWRNVLRYLAYmLISVLTLGIGAVVAAFmagmSQRKQTPHDKICDTLVVDR 386
Cdd:COG1714 71 ETLRRGQTLGKRALGLRVVDLD--GGPISFGQALLRNLLR-ILSILPLGLGLLWALF----DKRRQRLHDLLAGTVVVRE 143
|
|
| RDD |
pfam06271 |
RDD family; This family of proteins contain three highly conserved amino acids: one arginine ... |
233-380 |
1.49e-19 |
|
RDD family; This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).
Pssm-ID: 428859 Cd Length: 134 Bit Score: 84.31 E-value: 1.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 233 AGLWRRVAASILDSLITTFAVYLIVIPLVFVvalattrGDSGSALDDGSAMGIALVVMsygigLAIPTLYFAWMQSSRlQ 312
Cdd:pfam06271 1 AGLWRRLLAFLIDLLILLIISLLLALLFGLI-------GFSPGLATAGSLLLLLLLVF-----LLVLLVYFLLFESKT-G 67
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492834044 313 ASLGKLACGIKVVKADsnGARVGFWRNVLRYLA-YMLISVLTLGIGAVVAAFMAGMSQRKQTPHDKICD 380
Cdd:pfam06271 68 QTLGKRLLGIRVVDAD--GRPLSLAQALIRALLlLLPVLGLVGFLLFLIGFLFLLFDGKRQTLHDKIAG 134
|
|
| GYF_2 |
pfam14237 |
GYF domain 2; This domain is found in bacteria, archaea and eukaryotes, and is approximately ... |
4-55 |
2.22e-12 |
|
GYF domain 2; This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. It contains an evolutionary conserved signature W-X-Y-X6-11-GPF-X4-M-X2-W-X3-GYF, the site of interaction with proline-rich peptides. Family members include RME-8 (Required for receptor-mediated endocytosis 8), a DNAJC13 protein. RME-8 was first identified as a protein that is required for endocytosis in Caenorhabditis elegans. It coordinates the activity of the WASH complex with the function of the retromer SNX dimer to control endosomal tubulation. Family members found in Arabidopsis include Arabidopsis trithorax-related3 (Atxr3), also known as set domain group 2 (Sdg2). It is the major enzyme responsible for H3K4me3 in Arabidopsis and SDG2-dependent H3K4m3 is critical for regulating gene expression and plant development. Another family member found in Arabidopsis is Tic56. It is an essential subunit of a 1-MDa protein complex at the inner chloroplast envelope membrane. Furthermore, Tic56 is important for rRNA processing and chloroplast ribosome assembly.
Pssm-ID: 464112 Cd Length: 50 Bit Score: 61.41 E-value: 2.22e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 492834044 4 WYYADAQrQRQGPVDTDTLAARLSQGIIDRTSLVWREGLPQWVTLSEVAsEL 55
Cdd:pfam14237 1 WYYAVNG-QQQGPFSLEELRQLAASGEITPDTLVWREGMDDWKPASDVP-EL 50
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
58-241 |
5.46e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.80 E-value: 5.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 58 DTLAPALPPTAAD-APMPEHAEVAQATALPAATVPGDLAPVAELPSH---AWSGQAQPAASGADALTVPSHTPYGATSGA 133
Cdd:PRK12323 384 QPAPAAAAPAAAApAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPealAAARQASARGPGGAPAPAPAPAAAPAAAAR 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 134 APLTSARADIADHPLGEAEYAPAGPSAPstpvAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWET 213
Cdd:PRK12323 464 PAAAGPRPVAAAAAAAPARAAPAAAPAP----ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539
|
170 180
....*....|....*....|....*...
gi 492834044 214 PVGASPSADAvihdAPVVYAGLWRRVAA 241
Cdd:PRK12323 540 TLAPAPAAAP----APRAAAATEPVVAP 563
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
59-225 |
1.21e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.52 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 59 TLAPALPPTAADAPmpehaevAQATALPAAT-VPGDLAPVAelpshawsgQAQPAASGADaltVPSHTPYGATSGAAPLT 137
Cdd:pfam05109 429 TTSPTLNTTGFAAP-------NTTTGLPSSThVPTNLTAPA---------STGPTVSTAD---VTSPTPAGTTSGASPVT 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 138 SARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPltaaweTPVGA 217
Cdd:pfam05109 490 PSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSP------TPAVT 563
|
....*...
gi 492834044 218 SPSADAVI 225
Cdd:pfam05109 564 TPTPNATI 571
|
|
| KLF14_N |
cd21576 |
N-terminal domain of Kruppel-like factor 14; Kruppel-like factor 14 (KLF14; also known as ... |
61-192 |
6.29e-03 |
|
N-terminal domain of Kruppel-like factor 14; Kruppel-like factor 14 (KLF14; also known as Krueppel-like factor 14 or basic transcription element-binding protein 5/BTEB5) is a protein that in humans is encoded by the KLF14 gene. KLF14 regulates the transcription of various genes, including TGFbetaRII (the type II receptor for TGFbeta). KLF14 is expressed in many tissues, lacks introns, and is subject to parent-specific expression. It also appears to be a master regulator of gene expression in adipose tissue. KLF14 is associated with coronary artery disease, hypercholesterolemia, and type 2 diabetes. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF14 belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF14.
Pssm-ID: 409238 [Multi-domain] Cd Length: 195 Bit Score: 37.88 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGAdaltvPSHTPYGATSGAAPLTSAR 140
Cdd:cd21576 58 GPAWVPPLLQVPAPSPGAGGAAPHLLAASVLADLRGGAGEGSREDSGEAPRASSGS-----SDPARGSSPTLGSEPAPAS 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 492834044 141 ADIAdhpLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPAST 192
Cdd:cd21576 133 GEDA---VSGPESSFGAPAIPSAPAAPGAPAVSGEVPGGAPGAGPAPAAGPA 181
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YckC |
COG1714 |
Uncharacterized membrane protein YckC, RDD family [Function unknown]; |
227-386 |
6.03e-31 |
|
Uncharacterized membrane protein YckC, RDD family [Function unknown];
Pssm-ID: 441320 Cd Length: 143 Bit Score: 115.75 E-value: 6.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 227 DAPVVYAGLWRRVAASILDSLITTFAVYLIVIPLVFVVALATtrgdsgsalddgsaMGIALVvmsygIGLAIPTLYFAWM 306
Cdd:COG1714 10 ALELRYAGLGRRLLAFLIDLLILFALLLLLALVLLLGLLGAL--------------LGLLLL-----LGFLVAFLYFVLF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 307 QSSRLQASLGKLACGIKVVKADsnGARVGFWRNVLRYLAYmLISVLTLGIGAVVAAFmagmSQRKQTPHDKICDTLVVDR 386
Cdd:COG1714 71 ETLRRGQTLGKRALGLRVVDLD--GGPISFGQALLRNLLR-ILSILPLGLGLLWALF----DKRRQRLHDLLAGTVVVRE 143
|
|
| RDD |
pfam06271 |
RDD family; This family of proteins contain three highly conserved amino acids: one arginine ... |
233-380 |
1.49e-19 |
|
RDD family; This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).
Pssm-ID: 428859 Cd Length: 134 Bit Score: 84.31 E-value: 1.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 233 AGLWRRVAASILDSLITTFAVYLIVIPLVFVvalattrGDSGSALDDGSAMGIALVVMsygigLAIPTLYFAWMQSSRlQ 312
Cdd:pfam06271 1 AGLWRRLLAFLIDLLILLIISLLLALLFGLI-------GFSPGLATAGSLLLLLLLVF-----LLVLLVYFLLFESKT-G 67
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492834044 313 ASLGKLACGIKVVKADsnGARVGFWRNVLRYLA-YMLISVLTLGIGAVVAAFMAGMSQRKQTPHDKICD 380
Cdd:pfam06271 68 QTLGKRLLGIRVVDAD--GRPLSLAQALIRALLlLLPVLGLVGFLLFLIGFLFLLFDGKRQTLHDKIAG 134
|
|
| GYF_2 |
pfam14237 |
GYF domain 2; This domain is found in bacteria, archaea and eukaryotes, and is approximately ... |
4-55 |
2.22e-12 |
|
GYF domain 2; This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. It contains an evolutionary conserved signature W-X-Y-X6-11-GPF-X4-M-X2-W-X3-GYF, the site of interaction with proline-rich peptides. Family members include RME-8 (Required for receptor-mediated endocytosis 8), a DNAJC13 protein. RME-8 was first identified as a protein that is required for endocytosis in Caenorhabditis elegans. It coordinates the activity of the WASH complex with the function of the retromer SNX dimer to control endosomal tubulation. Family members found in Arabidopsis include Arabidopsis trithorax-related3 (Atxr3), also known as set domain group 2 (Sdg2). It is the major enzyme responsible for H3K4me3 in Arabidopsis and SDG2-dependent H3K4m3 is critical for regulating gene expression and plant development. Another family member found in Arabidopsis is Tic56. It is an essential subunit of a 1-MDa protein complex at the inner chloroplast envelope membrane. Furthermore, Tic56 is important for rRNA processing and chloroplast ribosome assembly.
Pssm-ID: 464112 Cd Length: 50 Bit Score: 61.41 E-value: 2.22e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 492834044 4 WYYADAQrQRQGPVDTDTLAARLSQGIIDRTSLVWREGLPQWVTLSEVAsEL 55
Cdd:pfam14237 1 WYYAVNG-QQQGPFSLEELRQLAASGEITPDTLVWREGMDDWKPASDVP-EL 50
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
58-241 |
5.46e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.80 E-value: 5.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 58 DTLAPALPPTAAD-APMPEHAEVAQATALPAATVPGDLAPVAELPSH---AWSGQAQPAASGADALTVPSHTPYGATSGA 133
Cdd:PRK12323 384 QPAPAAAAPAAAApAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPealAAARQASARGPGGAPAPAPAPAAAPAAAAR 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 134 APLTSARADIADHPLGEAEYAPAGPSAPstpvAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWET 213
Cdd:PRK12323 464 PAAAGPRPVAAAAAAAPARAAPAAAPAP----ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539
|
170 180
....*....|....*....|....*...
gi 492834044 214 PVGASPSADAvihdAPVVYAGLWRRVAA 241
Cdd:PRK12323 540 TLAPAPAAAP----APRAAAATEPVVAP 563
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
61-243 |
9.53e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.95 E-value: 9.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALTVPSHTPYGATSGAAPltSAR 140
Cdd:PRK12323 414 AAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA--PAP 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 141 ADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGT-PGTVGAAAPTPMPASTAAATQAPSAPATAPltaawetPVGASP 219
Cdd:PRK12323 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPdPATADPDDAFETLAPAPAAAPAPRAAAATE-------PVVAPR 564
|
170 180
....*....|....*....|....
gi 492834044 220 SADAVIHDAPVVYAGLWRRVAASI 243
Cdd:PRK12323 565 PPRASASGLPDMFDGDWPALAARL 588
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
52-231 |
4.90e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.08 E-value: 4.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 52 ASELGMDTLAPALPPtaadaPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGA--------DALTVPS 123
Cdd:PHA03247 2635 ANEPDPHPPPTVPPP-----ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSltsladppPPPPTPE 2709
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 124 HTPYGATSGA-APLTSARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAP 202
Cdd:PHA03247 2710 PAPHALVSATpLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
|
170 180
....*....|....*....|....*....
gi 492834044 203 ATAPLTAAWETPVGASPSADAVIHDAPVV 231
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLAPAAAL 2818
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
61-185 |
5.95e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.48 E-value: 5.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAAdAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALT-----VPSHTPYGATSGAAP 135
Cdd:PRK14951 379 KTPARPEAA-APAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAApaaapAAVALAPAPPAQAAP 457
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 492834044 136 LTSARADIADHPLG--EAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAP 185
Cdd:PRK14951 458 ETVAIPVRVAPEPAvaSAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEA 509
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
61-223 |
1.10e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.46 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATV----------PGDLAPVAELPSHAWSGQAQPAASG-------ADALTVPS 123
Cdd:PRK07003 372 VPARVAGAVPAPGARAAAAVGASAVPAVTAvtgaagaalaPKAAAAAAATRAEAPPAAPAPPATAdrgddaaDGDAPVPA 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 124 HTPYGATSGAAPLTSARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPA 203
Cdd:PRK07003 452 KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPE 531
|
170 180
....*....|....*....|
gi 492834044 204 TAPltaawETPVGASPSADA 223
Cdd:PRK07003 532 ARP-----PTPAAAAPAARA 546
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
82-242 |
1.16e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.59 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 82 ATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALTVPSHTPYGATSGAAPLTSARADIAdhplgeaeYAPAGPSAP 161
Cdd:PRK07764 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA--------APEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 162 STPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWETPVGASPSADAvihDAPVVYAGLWRRVAA 241
Cdd:PRK07764 658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAA---QPPQAAQGASAPSPA 734
|
.
gi 492834044 242 S 242
Cdd:PRK07764 735 A 735
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
8-242 |
1.16e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 44.32 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 8 DAQRQRQGPVD-------TDTLAARLSQGIIDRTSLVWREGLPQWVTLSEVASELGMDTLAPALPPTAADAPMPEHAEVA 80
Cdd:PRK14951 240 AAVRQMLGSVDrshvfrlIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVA 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 81 QAtalpAATVPGD-----------------LAP-------------VAELPSHAWSGQAQPAASgadaltvPSHTPYGAT 130
Cdd:PRK14951 320 RL----AALMPADetqllysiclhgraelgLAPdeyaaltmvllrlLAFKPAAAAEAAAPAEKK-------TPARPEAAA 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 131 SGAAPLTSARADIADHPLgeaeyAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAA 210
Cdd:PRK14951 389 PAAAPVAQAAAAPAPAAA-----PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIP 463
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 492834044 211 WET---PVGASPSADAVIHDAPV---------VYAGLWRRVAAS 242
Cdd:PRK14951 464 VRVapePAVASAAPAPAAAPAAArltpteegdVWHATVQQLAAA 507
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
59-225 |
1.21e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.52 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 59 TLAPALPPTAADAPmpehaevAQATALPAAT-VPGDLAPVAelpshawsgQAQPAASGADaltVPSHTPYGATSGAAPLT 137
Cdd:pfam05109 429 TTSPTLNTTGFAAP-------NTTTGLPSSThVPTNLTAPA---------STGPTVSTAD---VTSPTPAGTTSGASPVT 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 138 SARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPltaaweTPVGA 217
Cdd:pfam05109 490 PSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSP------TPAVT 563
|
....*...
gi 492834044 218 SPSADAVI 225
Cdd:pfam05109 564 TPTPNATI 571
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
85-231 |
1.41e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 85 LPAA--TVPGDLAPVAELPSHA-WSGQAQPAASGAdaltvPSHTPYGATSGAAPLTSARADIADHPLGEAEYAPAGPSAP 161
Cdd:PRK07764 364 LPSAsdDERGLLARLERLERRLgVAGGAGAPAAAA-----PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492834044 162 STPVAPEDTDS----WSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWETPVGASPSADAVIHDAPVV 231
Cdd:PRK07764 439 PAPPSPAGNAPaggaPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
61-234 |
1.54e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPG-DLAPVAELPSHAWSGQAQPAASGADALTVPSHTPYGATsGAAPLTSA 139
Cdd:PRK07764 604 ASSGPPEEAARPAAPAAPAAPAAPAPAGAAAApAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG-GAAPAAPP 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 140 RADIADHPLGEAEYAPAGPSAPSTPVAPedtdswsgTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWETPVGASP 219
Cdd:PRK07764 683 PAPAPAAPAAPAGAAPAQPAPAPAATPP--------AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754
|
170
....*....|....*
gi 492834044 220 SADAVIHDAPVVYAG 234
Cdd:PRK07764 755 PAQPPPPPAPAPAAA 769
|
|
| PRK10118 |
PRK10118 |
flagellar hook length control protein FliK; |
43-200 |
1.57e-04 |
|
flagellar hook length control protein FliK;
Pssm-ID: 236652 [Multi-domain] Cd Length: 408 Bit Score: 43.70 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 43 PQWVTLSEVASELGMDTLAPALPPTAADAPMPEHAE--VAQATALpAATVPG-DLAPVAELPSHAWSGQAQPAASGADAL 119
Cdd:PRK10118 102 DEQSLSSPLTPALKTSALAALSKNAQKDEKADDLSDedLASLSAL-FAMLPGqDNTTPVADAPSTVLPAEKPTLLTKDMP 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 120 TVPSHTPYGATSGAAPLTSARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAP 199
Cdd:PRK10118 181 SAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAPGTPAQPLTPLAAEAQAKAEVISTPSPVTAAASPTITPHQTQPLPTAA 260
|
.
gi 492834044 200 S 200
Cdd:PRK10118 261 A 261
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
80-229 |
1.93e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 80 AQATALPAATVPGDLAPVAEL-PSHAWSGQAQPAASGADAltVPSHTPYGATSGAAPLTSARADIADHPLGEAEYAPAGP 158
Cdd:PRK07764 595 AGGEGPPAPASSGPPEEAARPaAPAAPAAPAAPAPAGAAA--APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAK 672
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492834044 159 SAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWETPVGASPSADAVIHDAP 229
Cdd:PRK07764 673 AGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP 743
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
127-199 |
2.15e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 43.73 E-value: 2.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492834044 127 YGATSGAAPLTSARADIADHPLGEAEYAPAGPSAPSTpvAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAP 199
Cdd:PRK12270 36 YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP--APPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
60-200 |
2.44e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.44 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 60 LAPALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAwSGQAQPAASGADALTVPSHTPYGATSGAAPLTSA 139
Cdd:PRK07764 374 LLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPA-AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492834044 140 RADIADHPLGEAEYAPAGPSAPSTPVAPEdtdswsGTPGTVGAAAPTPMPASTAAATQAPS 200
Cdd:PRK07764 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPA------PAPPAAPAPAAAPAAPAAPAAPAGAD 507
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
62-218 |
2.55e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 62 PALPPTAAD----------APMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALTVPSHTPyGATS 131
Cdd:PHA03247 2686 RAARPTVGSltsladppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP-PTTA 2764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 132 GAAPLTSARADIADHP--LGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAA--ATQAPSAPATAPL 207
Cdd:PHA03247 2765 GPPAPAPPAAPAAGPPrrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPppTSAQPTAPPPPPG 2844
|
170
....*....|.
gi 492834044 208 TAAWETPVGAS 218
Cdd:PHA03247 2845 PPPPSLPLGGS 2855
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
61-223 |
4.17e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 4.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALT---VPSHTPYGATSGAAPLT 137
Cdd:PRK07764 614 RPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAggaAPAAPPPAPAPAAPAAP 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 138 SARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLtaawetPVGA 217
Cdd:PRK07764 694 AGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPA------PAPA 767
|
....*.
gi 492834044 218 SPSADA 223
Cdd:PRK07764 768 AAPAAA 773
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
61-199 |
4.55e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 42.55 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALTVP--SHTPYGATSGAAPLTS 138
Cdd:PRK07994 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqRAQGATKAKKSEPAAA 446
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492834044 139 ARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSW-SGTPGTVGAAAPTPMPASTAAATQAP 199
Cdd:PRK07994 447 SRARPVNSALERLASVRPAPSALEKAPAKKEAYRWkATNPVEVKKEPVATPKALKKALEHEK 508
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
61-199 |
5.88e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 42.36 E-value: 5.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAP------MPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAAsgadALTVPSHTPYGATsGAA 134
Cdd:PHA03378 650 TPHQPPQVEITPykptwtQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPA----APPGRAQRPAAAT-GRA 724
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492834044 135 PLTSARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTP-GTVGAAAPTPMPASTAAATQAP 199
Cdd:PHA03378 725 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPaAAPGAPTPQPPPQAPPAPQQRP 790
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
37-220 |
6.67e-04 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.87 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 37 VWREGLPQWVTLSEVASELGMDTLAPALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGA 116
Cdd:pfam17823 86 VTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAA 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 117 DALTVPSHTPYGATSGAAPLTSARADIADHPLGE----AEYAPAGPSA--------PSTPVAPEDTDSWSGTPGTVGAAA 184
Cdd:pfam17823 166 SAPHAASPAPRTAASSTTAASSTTAASSAPTTAAssapATLTPARGIStaatatghPAAGTALAAVGNSSPAAGTVTAAV 245
|
170 180 190
....*....|....*....|....*....|....*.
gi 492834044 185 PTPMPASTAAATQAPSAPATAPLTAAWETPVGASPS 220
Cdd:pfam17823 246 GTVTPAALATLAAAAGTVASAAGTINMGDPHARRLS 281
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
106-230 |
7.52e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 106 SGQAQPA--ASGADALTVPSHTPYGATSGAAPLTSARADIADHPLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAA 183
Cdd:PRK12323 369 GGGAGPAtaAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAP 448
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 492834044 184 APTPMPAST-AAATQAPSAPATAPLTAAWETPVGASPSADAVIHDAPV 230
Cdd:PRK12323 449 APAPAPAAApAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
65-233 |
1.89e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.60 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 65 PPTAADAPMPEHAEVAQATALPAatvPGDLAPVAELPSHAWSGQAQPAASGAdALTVPSHTPYGATSGAAPLT-SARADI 143
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPA---PGARAAAAVGASAVPAVTAVTGAAGA-ALAPKAAAAAAATRAEAPPAaPAPPAT 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 144 ADHPLGEAEYAPAGPSAPSTPVAPEDT-DSWSGTPGTVGAAAPTPMPASTAAATQAPSAPATAPLTAAWETPVGASPSAD 222
Cdd:PRK07003 436 ADRGDDAADGDAPVPAKANARASADSRcDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAA 515
|
170
....*....|.
gi 492834044 223 AVIHDAPVVYA 233
Cdd:PRK07003 516 ASREDAPAAAA 526
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
59-199 |
3.02e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.31 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 59 TLAPALPPTAADAPMPEHAEVAQATALPAATvPGDLAPVAELPSHAWSGQAQPAASGADALTVPSHTPygatSGAAPLTS 138
Cdd:PHA03247 2748 PATPGGPARPARPPTTAGPPAPAPPAAPAAG-PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP----AAALPPAA 2822
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492834044 139 ARADIADHPLGEAEYAPAGPSAPSTPvaPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAP 199
Cdd:PHA03247 2823 SPAGPLPPPTSAQPTAPPPPPGPPPP--SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP 2881
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
49-200 |
3.90e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.58 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 49 SEVASELGMDTLAPALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQA----------QPAASGADA 118
Cdd:PRK07764 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAApaqpapapaaTPPAGQADD 716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 119 ltVPSHTPYGATSGAAPLTSARADIADHPLGEAEYAPAGPSAPSTPV-APEDTDSWSGTPGTVGAAAPTPMPASTAAATQ 197
Cdd:PRK07764 717 --PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPpAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
|
...
gi 492834044 198 APS 200
Cdd:PRK07764 795 DED 797
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
61-184 |
4.30e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 39.45 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPmPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALTVPSHTPYGATSGAAPLTSAR 140
Cdd:PRK07003 421 TRAEAPPAAPAP-PATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 492834044 141 ADIADHPLGEA----------EYAPAGPSAPSTPVAPEDTDSWSGTPGtvGAAA 184
Cdd:PRK07003 500 SAATPAAVPDArapaaasredAPAAAAPPAPEARPPTPAAAAPAARAG--GAAA 551
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
61-201 |
5.09e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 5.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEhAEVAQATALPAATVPGDLAPVAELPShawsgqAQPAASGADALTVPSHTPYGATSGAAPLTSAR 140
Cdd:PHA03247 2732 SPALPAAPAPPAVPA-GPATPGGPARPARPPTTAGPPAPAPP------AAPAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 141 ADIADHPLGEA-----EYAPAGPSAPST---PVAPEDTDSWSGTPGTV-GAAAPTPMPASTAAATQAPSA 201
Cdd:PHA03247 2805 ADPPAAVLAPAaalppAASPAGPLPPPTsaqPTAPPPPPGPPPPSLPLgGSVAPGGDVRRRPPSRSPAAK 2874
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
44-200 |
5.39e-03 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 38.78 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 44 QWVTLSEVASELGMDTLAPALPPTAADAPMPEHAEVAQATALPAATvpgdlapvAELPSHAWSGQAQPAASGADALTVPS 123
Cdd:PTZ00436 201 QKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKA--------AAAPAKAAAPPAKAAAPPAKAAAPPA 272
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492834044 124 HTPYGATSGAAPLTSARAdiadhPLGEAEYAPAGPSAPstPVAPEDTDSWSGTPGTVGAAAPTPMPASTAAATQAPS 200
Cdd:PTZ00436 273 KAAAPPAKAAAPPAKAAA-----PPAKAAAAPAKAAAA--PAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPA 342
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
84-245 |
6.01e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 39.06 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 84 ALPAATVPGDLAPVAelPSHAWSGQAQPAASGADALTVPSHTPYGATSGAAPLTSARADIAdhplgeAEYAPAGPSAPST 163
Cdd:PRK07003 361 AVTGGGAPGGGVPAR--VAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA------ATRAEAPPAAPAP 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 164 PVAPEDTDSWSGTPGTVGAAAPTPMPASTAAA--TQAPSAPATAPLTAAWETPVGA----SPSADAVIHDAPVVYAGLWR 237
Cdd:PRK07003 433 PATADRGDDAADGDAPVPAKANARASADSRCDerDAQPPADSGSASAPASDAPPDAafepAPRAAAPSAATPAAVPDARA 512
|
....*...
gi 492834044 238 RVAASILD 245
Cdd:PRK07003 513 PAAASRED 520
|
|
| KLF14_N |
cd21576 |
N-terminal domain of Kruppel-like factor 14; Kruppel-like factor 14 (KLF14; also known as ... |
61-192 |
6.29e-03 |
|
N-terminal domain of Kruppel-like factor 14; Kruppel-like factor 14 (KLF14; also known as Krueppel-like factor 14 or basic transcription element-binding protein 5/BTEB5) is a protein that in humans is encoded by the KLF14 gene. KLF14 regulates the transcription of various genes, including TGFbetaRII (the type II receptor for TGFbeta). KLF14 is expressed in many tissues, lacks introns, and is subject to parent-specific expression. It also appears to be a master regulator of gene expression in adipose tissue. KLF14 is associated with coronary artery disease, hypercholesterolemia, and type 2 diabetes. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. KLF14 belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF14.
Pssm-ID: 409238 [Multi-domain] Cd Length: 195 Bit Score: 37.88 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGAdaltvPSHTPYGATSGAAPLTSAR 140
Cdd:cd21576 58 GPAWVPPLLQVPAPSPGAGGAAPHLLAASVLADLRGGAGEGSREDSGEAPRASSGS-----SDPARGSSPTLGSEPAPAS 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 492834044 141 ADIAdhpLGEAEYAPAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPAST 192
Cdd:cd21576 133 GEDA---VSGPESSFGAPAIPSAPAAPGAPAVSGEVPGGAPGAGPAPAAGPA 181
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
61-193 |
8.83e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 38.43 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 61 APALPPTAADAPMPEHAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADALTVPSHTPYGATSGAAPLTSAR 140
Cdd:PRK12727 75 APTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPR 154
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 492834044 141 ADIADHPLGEAEYApAGPSAPSTPVAPEDTDSWSGTPGTVGAAAPTPMPASTA 193
Cdd:PRK12727 155 QEHALSAVPEQLFA-DFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYA 206
|
|
| rne |
PRK10811 |
ribonuclease E; Reviewed |
65-242 |
9.14e-03 |
|
ribonuclease E; Reviewed
Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 38.48 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 65 PPTAADAPMpehAEVAQATALPAATVPGDLAPVAELPSHAWSGQAQPAASGADAltVPSHTPYGAtsgAAPLTSARADIA 144
Cdd:PRK10811 861 AEEVQVQPV---VAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVV--VETTHPEVI---AAPVTEQPQVIT 932
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492834044 145 DhplgEAEYAPAGPSAPSTPVAPEDTDSwsgTPGTVGAAAPTPMPASTAAATQAPSAPATAPltaawETPVGASPSADAV 224
Cdd:PRK10811 933 E----SDVAVAQEVAEHAEPVVEPQDET---ADIEEAAETAEVVVAEPEVVAQPAAPVVAEV-----AAEVETVTAVEPE 1000
|
170
....*....|....*...
gi 492834044 225 IHDAPVVYAGLWRRVAAS 242
Cdd:PRK10811 1001 VAPAQVPEATVEHNHATA 1018
|
|
| |
