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Conserved domains on  [gi|492864423|ref|WP_006014566|]
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phosphate ABC transporter permease PstA [Brucella ovis]

Protein Classification

PstA family ABC transporter permease( domain architecture ID 12111586)

PstA family ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters; similar to phosphate transport system permease protein PstA; contains a DUF3333 domain

Gene Ontology:  GO:0140359|GO:0042626|GO:0043190|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 195-436 1.08e-89

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 272.68  E-value: 1.08e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 195 AFNTGLFTFGASSRPETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNINNLAAVPSIVFGLL 274
Cdd:COG0581   20 ALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARLIRFAIDVLAGVPSIVYGLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 275 GLAVLINFFGLPRSAsLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIG 354
Cdd:COG0581  100 GYALFVLTLGLGFSL-LAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 355 LAHALGETAPLLLIGmvAFVADVPATPMDPSTALPVQIYMWANEAERAFVERTSGAIIVLLLFLAVMNIAAIILRRRFER 434
Cdd:COG0581  179 IARAAGETAPLLFTA--GVSPFLPLSLFDPFATLPVHIYNLASSPYPAAQELAWAAALVLLLLVLLLNLLARLLRRRFRK 256


                 ..
gi 492864423 435 RW 436
Cdd:COG0581  257 KL 258
DUF3333 pfam11812
Domain of unknown function (DUF3333); This family of proteins are functionally uncharacterized. ...
 17-168 1.18e-60

Domain of unknown function (DUF3333); This family of proteins are functionally uncharacterized. This family is only found in bacteria. This presumed domain is typically between 116 to 159 amino acids in length.


:

Pssm-ID: 463357  Cd Length: 150  Bit Score: 193.91  E-value: 1.18e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423   17 DIGLKRRYAAERRFRLYGILAIAVGVFFLCAFLFSVFSKGYTAFWQTTLYLPVKLEQQVIDPGNKheTDPNVLIAANYPL 96
Cdd:pfam11812   1 EARLKRRYAAERRFRAYGIAAIALALLFLVILLGSIVSKGYTAFQQTEITLDVELDAAVIDPDGP--RDPKKLARANYPA 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492864423   97 LVRNALAEKLGVArTDRPAMRDIGRFYSDGVRVQLRKMVMDDPSLIGTTQTIPVLAGADIDSAFKGQIDLSV 168
Cdd:pfam11812  79 LIRQALAAAFPEV-TDRRDKRDLYGLISSGAAYQLRDRVLADPSLIGTTVTVWLLASDDVDQALKGRIDRDL 149
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 195-436 1.08e-89

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 272.68  E-value: 1.08e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 195 AFNTGLFTFGASSRPETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNINNLAAVPSIVFGLL 274
Cdd:COG0581   20 ALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARLIRFAIDVLAGVPSIVYGLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 275 GLAVLINFFGLPRSAsLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIG 354
Cdd:COG0581  100 GYALFVLTLGLGFSL-LAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 355 LAHALGETAPLLLIGmvAFVADVPATPMDPSTALPVQIYMWANEAERAFVERTSGAIIVLLLFLAVMNIAAIILRRRFER 434
Cdd:COG0581  179 IARAAGETAPLLFTA--GVSPFLPLSLFDPFATLPVHIYNLASSPYPAAQELAWAAALVLLLLVLLLNLLARLLRRRFRK 256


                 ..
gi 492864423 435 RW 436
Cdd:COG0581  257 KL 258
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 194-434 2.44e-65

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 210.55  E-value: 2.44e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  194 QAFNTGLFTFGASSRPETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNINNLAAVPSIVFGL 273
Cdd:TIGR00974  32 PALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIYLAEYANGSRFTKIIRFAVDILAGVPSIVVGL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  274 LGLAVLINFFGLPRSASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTII 353
Cdd:TIGR00974 112 FGYGFFVLTYLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIIL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  354 GLAHALGETAPLLLIgmVAFVADVPATPMDPSTALPVQIYMWANE-AERAFVERTSGAIIVLLLFLAVMNIAAIILRRRF 432
Cdd:TIGR00974 192 SIARAAGETAPLLFT--AGGSAFTPPNLFDPFATLPVLIYNLASEgPYVEAQQLAWAAALVLIVLVLLLNLIARLLRRRF 269


                  ..
gi 492864423  433 ER 434
Cdd:TIGR00974 270 KK 271
DUF3333 pfam11812
Domain of unknown function (DUF3333); This family of proteins are functionally uncharacterized. ...
 17-168 1.18e-60

Domain of unknown function (DUF3333); This family of proteins are functionally uncharacterized. This family is only found in bacteria. This presumed domain is typically between 116 to 159 amino acids in length.


Pssm-ID: 463357  Cd Length: 150  Bit Score: 193.91  E-value: 1.18e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423   17 DIGLKRRYAAERRFRLYGILAIAVGVFFLCAFLFSVFSKGYTAFWQTTLYLPVKLEQQVIDPGNKheTDPNVLIAANYPL 96
Cdd:pfam11812   1 EARLKRRYAAERRFRAYGIAAIALALLFLVILLGSIVSKGYTAFQQTEITLDVELDAAVIDPDGP--RDPKKLARANYPA 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492864423   97 LVRNALAEKLGVArTDRPAMRDIGRFYSDGVRVQLRKMVMDDPSLIGTTQTIPVLAGADIDSAFKGQIDLSV 168
Cdd:pfam11812  79 LIRQALAAAFPEV-TDRRDKRDLYGLISSGAAYQLRDRVLADPSLIGTTVTVWLLASDDVDQALKGRIDRDL 149
pstA PRK11268
phosphate ABC transporter permease PstA;
210-396 4.61e-22

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 95.52  E-value: 4.61e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 210 ETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVnINN-LAAVPSIVFGLLGLAVLINFFGlpRS 288
Cdd:PRK11268  75 AGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRF-INDiLLSAPSIVVGLFVYTIVVAQME--HF 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 289 ASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLI 368
Cdd:PRK11268 152 SGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFT 231

                        170       180       190
                 ....*....|....*....|....*....|
gi 492864423 369 GMVA--FVADVpatpMDPSTALPVQIYMWA 396
Cdd:PRK11268 232 ALSNqfWSTDM----MQPIANLPVTIFKFA 257
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 218-369 8.65e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 78.09  E-value: 8.65e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 218 LVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNInnLAAVPSIVFGLLGLAVLINFF--GLPRSASLVGGL 295
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDL--LLSLPSLVLGLLLVLLFGVLLgwGILPGLGLPALI 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492864423 296 VLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLIG 369
Cdd:cd06261   79 LALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 248-435 9.00e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 63.47  E-value: 9.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  248 RKNRFTDMIEVNINNLA-AVPSIVFGLLglAVLINFFGLPRSASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLG 326
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLqALPSFVLAIL--LVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  327 LGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLIGMVAFVADvpatpmdpstaLPVQIYMWANEAErafver 406
Cdd:pfam00528  89 LGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL-----------LLIEAILGYDYPE------ 151

                         170       180
                  ....*....|....*....|....*....
gi 492864423  407 TSGAIIVLLLFLAVMNIAAIILRRRFERR 435
Cdd:pfam00528 152 IQGPVLAAALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 195-436 1.08e-89

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 272.68  E-value: 1.08e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 195 AFNTGLFTFGASSRPETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNINNLAAVPSIVFGLL 274
Cdd:COG0581   20 ALSWEFLTSSPSPGPEGGGILPAIVGTLLLVLLATLIAVPLGVLAAIYLAEYARGGRLARLIRFAIDVLAGVPSIVYGLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 275 GLAVLINFFGLPRSAsLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIG 354
Cdd:COG0581  100 GYALFVLTLGLGFSL-LAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILA 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 355 LAHALGETAPLLLIGmvAFVADVPATPMDPSTALPVQIYMWANEAERAFVERTSGAIIVLLLFLAVMNIAAIILRRRFER 434
Cdd:COG0581  179 IARAAGETAPLLFTA--GVSPFLPLSLFDPFATLPVHIYNLASSPYPAAQELAWAAALVLLLLVLLLNLLARLLRRRFRK 256


                 ..
gi 492864423 435 RW 436
Cdd:COG0581  257 KL 258
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 194-434 2.44e-65

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 210.55  E-value: 2.44e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  194 QAFNTGLFTFGASSRPETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNINNLAAVPSIVFGL 273
Cdd:TIGR00974  32 PALNLEFFTKSPTPTGAEGGIGPAIVGTLLLTLLAIVIAVPLGIGAAIYLAEYANGSRFTKIIRFAVDILAGVPSIVVGL 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  274 LGLAVLINFFGLPRSASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTII 353
Cdd:TIGR00974 112 FGYGFFVLTYLGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIIL 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  354 GLAHALGETAPLLLIgmVAFVADVPATPMDPSTALPVQIYMWANE-AERAFVERTSGAIIVLLLFLAVMNIAAIILRRRF 432
Cdd:TIGR00974 192 SIARAAGETAPLLFT--AGGSAFTPPNLFDPFATLPVLIYNLASEgPYVEAQQLAWAAALVLIVLVLLLNLIARLLRRRF 269


                  ..
gi 492864423  433 ER 434
Cdd:TIGR00974 270 KK 271
DUF3333 pfam11812
Domain of unknown function (DUF3333); This family of proteins are functionally uncharacterized. ...
 17-168 1.18e-60

Domain of unknown function (DUF3333); This family of proteins are functionally uncharacterized. This family is only found in bacteria. This presumed domain is typically between 116 to 159 amino acids in length.


Pssm-ID: 463357  Cd Length: 150  Bit Score: 193.91  E-value: 1.18e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423   17 DIGLKRRYAAERRFRLYGILAIAVGVFFLCAFLFSVFSKGYTAFWQTTLYLPVKLEQQVIDPGNKheTDPNVLIAANYPL 96
Cdd:pfam11812   1 EARLKRRYAAERRFRAYGIAAIALALLFLVILLGSIVSKGYTAFQQTEITLDVELDAAVIDPDGP--RDPKKLARANYPA 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492864423   97 LVRNALAEKLGVArTDRPAMRDIGRFYSDGVRVQLRKMVMDDPSLIGTTQTIPVLAGADIDSAFKGQIDLSV 168
Cdd:pfam11812  79 LIRQALAAAFPEV-TDRRDKRDLYGLISSGAAYQLRDRVLADPSLIGTTVTVWLLASDDVDQALKGRIDRDL 149
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 213-436 1.06e-42

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 152.17  E-value: 1.06e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 213 GLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARK---NRFTDMIEVninnLAAVPSIVFGLLGLAVLINFF--GLPR 287
Cdd:COG0573   74 GILPLIVGTLLVSLIALLIAVPLGLGIAIFLSEYAPPrlrRILKPAIEL----LAGIPSVVYGFWGLFVLVPLLrdLFPW 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 288 SAS----LVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGET- 362
Cdd:COG0573  150 PPSgfslLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGETm 229

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492864423 363 APLLLIGMvafVADVPATPMDPSTALPVQIYMWANEAERAFVERTS--GAIIVLLLFLAVMNIAAIILRRRFERRW 436
Cdd:COG0573  230 AVLMVAGN---APQIPFSLFDPGRTLTALIALEFGEAPFGSLHYSAlfALGLVLFVITLLVNLLARLIVRRYREKY 302
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 213-432 4.62e-32

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 123.53  E-value: 4.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  213 GLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKnRFTDMIEVNINNLAAVPSIVFGLLGLAVLINFF--------- 283
Cdd:TIGR02138  60 GALPLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPK-RVRSVLKPVVELLAGIPSVVYGFWGLFVLVPFLkphfqpflg 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  284 ------GLPRSASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAH 357
Cdd:TIGR02138 139 snlgliPLFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGR 218

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492864423  358 ALGETAPLLLIGMVAFVAdVPATPMDPSTALPVQIYMWANEAERAFVERTS--GAIIVLLLFLAVMNIAAIILRRRF 432
Cdd:TIGR02138 219 ALGETMAVTMVIGNVFPI-SPLSLFDPGTTITSLIANQFGEASGGSVHTSAlfALGLVLFVITLLVNILARYIVRRR 294
pstA PRK11268
phosphate ABC transporter permease PstA;
210-396 4.61e-22

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 95.52  E-value: 4.61e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 210 ETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVnINN-LAAVPSIVFGLLGLAVLINFFGlpRS 288
Cdd:PRK11268  75 AGGGLANAIAGSGLLILWATVVGTPLGIMAGIYLAEYGRKSWLAEVIRF-INDiLLSAPSIVVGLFVYTIVVAQME--HF 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 289 ASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLI 368
Cdd:PRK11268 152 SGWAGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGETAPLLFT 231

                        170       180       190
                 ....*....|....*....|....*....|
gi 492864423 369 GMVA--FVADVpatpMDPSTALPVQIYMWA 396
Cdd:PRK11268 232 ALSNqfWSTDM----MQPIANLPVTIFKFA 257
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 218-369 8.65e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 78.09  E-value: 8.65e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 218 LVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIEVNInnLAAVPSIVFGLLGLAVLINFF--GLPRSASLVGGL 295
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDL--LLSLPSLVLGLLLVLLFGVLLgwGILPGLGLPALI 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492864423 296 VLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLIG 369
Cdd:cd06261   79 LALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLG 152
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 210-435 4.43e-14

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 71.68  E-value: 4.43e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 210 ETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLeeFARKNRFTDMIEVNINNLAAVPSIVFGLlGLAVLINFFGLPRSa 289
Cdd:COG1177   55 SDPRLLDALLNSLLIALLSTLLATVLGTPAALAL--ARYRFRGRRLLLALLLLPLVVPGIVLGV-ALLLLFSALGLSGG- 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 290 slVGGLVL--TLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGEtaplll 367
Cdd:COG1177  131 --LWGLILahVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDE------ 202

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492864423 368 IGMVAFVADVPATPmdpstaLPVQIYMWANEAERAFVerTSGAIIVLLLFLAVMNIAAIILRRRFERR 435
Cdd:COG1177  203 FVITLFLAGPGVTT------LPVYIYSMIRRGISPEI--NALSTLLILLSLLLLLLAERLRRRGERRR 262
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 217-435 1.40e-13

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 69.69  E-value: 1.40e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 217 ALVGSLYMMLIVLGLSLPIGVAASIYLeefARKN-RFTDMIEVninnLAAVPSIV------FGLLGL--------AVLIN 281
Cdd:COG4149    8 ALWLSLKVALIATLLLLLLGIPLAWWL---ARTRfRGKGLLEA----LVTLPLVLpptvlgFYLLLLfgrngplgQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 282 FFGLprsaSLV---GGLVL--TLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLA 356
Cdd:COG4149   81 LFGI----SLVftwTGAVLasVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 357 HALGET-APLLLIGMVAFVADVpatpmdpstaLPVQIYmwanEAERAFVERTSGAIIVLLLFLAVMNIAAI-ILRRRFER 434
Cdd:COG4149  157 RALGEFgATLMFAGNIPGKTQT----------LPLAIY----DAVEAGDYAAAHALSLILLAISFVVLLLLnLLNRRRRR 222


                 .
gi 492864423 435 R 435
Cdd:COG4149  223 R 223
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 248-435 9.00e-12

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 63.47  E-value: 9.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  248 RKNRFTDMIEVNINNLA-AVPSIVFGLLglAVLINFFGLPRSASLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLG 326
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLqALPSFVLAIL--LVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARA 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  327 LGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLIGMVAFVADvpatpmdpstaLPVQIYMWANEAErafver 406
Cdd:pfam00528  89 LGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGL-----------LLIEAILGYDYPE------ 151

                         170       180
                  ....*....|....*....|....*....
gi 492864423  407 TSGAIIVLLLFLAVMNIAAIILRRRFERR 435
Cdd:pfam00528 152 IQGPVLAAALILLLLNLLVDILQRLLDPR 180
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 231-435 1.67e-11

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 63.42  E-value: 1.67e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  231 LSLPIGVAASIYLeeFARKNRFTDMIEVNINNLAAVPSIVFG---LLGLAV------LINFFGLPRSASLVGgLVL--TL 299
Cdd:TIGR02141  13 LLLPLGIPVAWLL--ARSRFRGKPLLEVLVTLPLVLPPTVLGfylLIAFGPngpigkLLELFGISLVFTFTG-AVLasVI 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423  300 MTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGETAPLLLIGmvafvADVPA 379
Cdd:TIGR02141  90 VSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA-----GNIPG 164

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 492864423  380 TpmdpSTALPVQIYMwaneaeraFVERTSGAIIVLLLFLAVMNIAAIILRRRFERR 435
Cdd:TIGR02141 165 E----TQTIPLAIYD--------AVESDYELAHQLSLVLLAISLIVLLLVELLNKR 208
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
217-435 2.45e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 62.49  E-value: 2.45e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 217 ALVGSLYMMLIVLGLSLPIGVAASIYLEEfaRKNRFTDMIEVNINNLAAVPSIVFGLLGLAVLINFFGLPRSASLVG-GL 295
Cdd:COG1178  339 ALLNSLLLALLAALLAVLLALLLAYLVRR--RRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTLAIlVL 416

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 296 VLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGE-TAPLLLigmvafv 374
Cdd:COG1178  417 AYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKElSATLLL------- 489

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492864423 375 adVPATpmdpSTALPVQIYmwaNEAERAFVERTSGAIIVLLLFLAvmnIAAIILRRRFERR 435
Cdd:COG1178  490 --RPPG----FETLAVLIY---QLASSGRYGEAAALALLLVLVSL---LPVLLLERLLGRR 538
modB PRK09421
molybdate ABC transporter permease subunit;
217-361 1.04e-08

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 55.31  E-value: 1.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 217 ALVGSLYMMLIVLGLSLPIGVAASIYLeefARKNRFTDMIEVNINNLAAV-PSIVFGLLGL----------AVLINFFGL 285
Cdd:PRK09421  10 AVLLSLKVSSVAVLFSLPFGILVAWLL---ARCRFPGKSLLDSLLHLPLVlPPVVTGYLLLismgrrgfigQWLYEWFGI 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492864423 286 PRSASLVGG-LVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGE 361
Cdd:PRK09421  87 SFAFSWRGAaLAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGE 163
pstC PRK11275
phosphate ABC transporter permease PstC;
210-362 1.87e-08

phosphate ABC transporter permease PstC;


Pssm-ID: 183070  Cd Length: 319  Bit Score: 55.47  E-value: 1.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 210 ETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFArKNRFTDMIEVNINNLAAVPSIVFGLLGLAVLINFF------ 283
Cdd:PRK11275  67 DIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELA-PGWLKRPLGIAIELLAAIPSIVYGMWGLFVFAPLFatyfqe 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 284 -------GLPRSASL-----------VGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAP 345
Cdd:PRK11275 146 pvgnvlsNIPIVGALfsgpafgigilAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKN 225

                        170
                 ....*....|....*..
gi 492864423 346 GILTGTIIGLAHALGET 362
Cdd:PRK11275 226 GVIGGVMLGLGRALGET 242
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 214-359 1.90e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 55.15  E-value: 1.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 214 LGVALVGSLYMMLIVLGLSLPIGVAASIYLEEFARKNRFTDMIevnINNLAAVPSIVFGLLglavLINFFGLPRSASLVg 293
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPL---LVFLRPIPPLALAPL----LILWFGIGEASKIF- 130

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492864423 294 glVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHAL 359
Cdd:COG0600  131 --VIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 295-434 2.72e-08

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 54.76  E-value: 2.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 295 LVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGEtaplllIGMVAFV 374
Cdd:COG0555  141 LAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGE------FGAVIFI 214

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 492864423 375 ADvpATPMDpSTALPVQIYMWANEAERAfverTSGAIIVLLLFLAVMNIAAI-ILRRRFER 434
Cdd:COG0555  215 AG--NLPMK-TEILPLLIYLKLEEGDYA----GATAIALVLLLISFLLLLLInLLQRRSRR 268
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
211-435 9.47e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 54.01  E-value: 9.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 211 TSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLE--EFARKNRFTDMIEVNInnlaAVPSIV--FGLLGL--------AV 278
Cdd:COG1178   49 DPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLArtDFPGRRLLRWLLLLPL----ALPPYVvaLAWIALfgpngllnTL 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 279 LINFFGLPRSA--SLVGG-LVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGL 355
Cdd:COG1178  125 LRALFGLEPPDiyGLGGIiLVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVF 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 356 AHALGETAPLLLIGMVAFVadvpatpmdpstaLPVQIYMwaneAERAFVERTSGAIIVLLLFLAVMniAAIILRRRFERR 435
Cdd:COG1178  205 LLCLADFGTPLVLGGGYTT-------------LTTAIYQ----AWLGDFDLGAAAALALVLLLLVL--LLLLLERRLRRR 265
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 295-435 1.80e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 46.29  E-value: 1.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 295 LVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGE-TAPLLLIGmvaf 373
Cdd:COG1176  159 IGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAfVTPALLGG---- 234

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 492864423 374 vadvPATPMdpstaLPVQIYMWANEAeRAFVERTSGAIIVLLLFLAVMNIAAIILRRRFERR 435
Cdd:COG1176  235 ----GKVLM-----IGNLIYQQFLSA-LNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLG 286
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 213-359 4.83e-04

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 4.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 213 GLGVALVGSLYMMLIVLGLSLPIGVAASIY---LEEFArkNRFTDMievninnLAAVPSIVF----------GLLGLAVL 279
Cdd:COG1173   77 GARISLLVGLLAVLIALVIGVLLGLLAGYFggwVDAVL--MRLVDV-------LLAFPSLLLaialvavlgpGLLNVILA 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 280 INFFGLPRSASLVGGLVLTLMTLPtIIIATRAalravppsirsavlgLGASKTQMVFHHVLPLAAPGILTGTIIGLAHAL 359
Cdd:COG1173  148 LGLTGWPGYARLVRAQVLSLRERE-YVEAARA---------------LGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
221-350 5.38e-04

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 42.00  E-value: 5.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 221 SLYMMLIVLGLSLPIGVAASIYLeefARKNRFTDMIEVNINNLAAVPSIVFgllgLAVLINFFGLPRsaslVGGLVLTLM 300
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWL---ARSPRAAKIIRPLLDAMQTTPAFVY----LVPIVMLFGIGN----VPGVVVTII 217

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 492864423 301 -TLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTG 350
Cdd:PRK10952 218 fALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 268
COG4590 COG4590
ABC-type uncharacterized transport system, permease component [General function prediction ...
 290-362 3.94e-03

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443647 [Multi-domain]  Cd Length: 757  Bit Score: 39.44  E-value: 3.94e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492864423 290 SLVGGLVLTLMTLPTIIIATRAALRAVPPSIRSAVLGLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALGET 362
Cdd:COG4590  608 ALVVGIAMGFAVIPTIFSIAEDAIFSVPKHLTQGSLALGATPWQTLTRVVLLTASPGIFSAVMIGLGRAVGET 680
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 188-360 4.96e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 38.90  E-value: 4.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 188 DEGIMKQAFN--TGLFT--FG---ASSRPETSGLGVALVGSLYMMLIVLGLSLPIGVAASIYLEefARKNRFTDMIevnI 260
Cdd:COG0601   58 DQPLLVQYLDwlGGLLRgdLGtsfVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAA--LRRGSWLDRL---I 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492864423 261 NNLA----AVPSIVFGLLGLAVLINFFGL-------PRSASLVGGL--------VLTLMTLPTIIIATRAALRAVPPS-- 319
Cdd:COG0601  133 TVLAllgiSIPSFWLGLLLILLFAVKLGWlpvsgrvSPWEDFLDALrhlilpalTLALGSLAGIARLTRSSMLEVLGQdy 212

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 492864423 320 IRSAVLgLGASKTQMVFHHVLPLAAPGILTGTIIGLAHALG 360
Cdd:COG0601  213 VRTARA-KGLSERRVLLRHALRNALIPVVTVLGLQLGGLLG 252
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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