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Conserved domains on  [gi|492940673|ref|WP_006052964|]
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MULTISPECIES: ribosome maturation factor RimP [Burkholderiaceae]

Protein Classification

ribosome maturation factor RimP( domain architecture ID 10011230)

ribosome maturation factor rimp is important for maturation of 30S ribosome subunits

Gene Symbol:  rimP
Gene Ontology:  GO:0000028|GO:0042274|GO:0006412
PubMed:  19150615

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 1-144 3.35e-58

ribosome maturation protein RimP; Reviewed


:

Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 178.07  E-value: 3.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   1 MQLTELIETTVVGLGYELVDLERT---GRGMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENI---DYeRLEVSSPGLDR 74
Cdd:PRK00092   7 EQLTELIEPVVEALGYELVDVEYVkegRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPipgAY-TLEVSSPGLDR 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  75 PLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaAMLDFTLADMDKARLVPK 144
Cdd:PRK00092  86 PLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKE--KEVEIPLDNIAKARLVVE 153
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 1-144 3.35e-58

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 178.07  E-value: 3.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   1 MQLTELIETTVVGLGYELVDLERT---GRGMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENI---DYeRLEVSSPGLDR 74
Cdd:PRK00092   7 EQLTELIEPVVEALGYELVDVEYVkegRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPipgAY-TLEVSSPGLDR 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  75 PLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaAMLDFTLADMDKARLVPK 144
Cdd:PRK00092  86 PLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKE--KEVEIPLDNIAKARLVVE 153
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
2-144 4.62e-54

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 167.22  E-value: 4.62e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   2 QLTELIETTVVGLGYELVDLERTGRG---MLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPL 76
Cdd:COG0779    7 RLEELLEPVLEELGLELVDVEVVKEGkrwVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDPipGAYTLEVSSPGLDRPL 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492940673  77 KKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaamLDFTLADMDKARLVPK 144
Cdd:COG0779   87 KKPRDFERFIGRLVKVKLREPIDGRKKFTGRLLGVDDDGVTLEVDGKE----VEIPLDDIAKARLVIE 150
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 71-144 1.05e-21

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 82.49  E-value: 1.05e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492940673  71 GLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaaMLDFTLADMDKARLVPK 144
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEPIDGRKKFTGELLGVDDDTVTLEVDDGK---EVEIPFDNIAKARLVPE 71
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 6-73 3.62e-18

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 73.40  E-value: 3.62e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492940673    6 LIETTVVGLGYELVDLERTGRG---MLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENIDYE--RLEVSSPGLD 73
Cdd:pfam02576   1 LIEPVVESLGFELVDVEFVKEGggwTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGeyTLEVSSPGLD 73
 
Name Accession Description Interval E-value
PRK00092 PRK00092
ribosome maturation protein RimP; Reviewed
 1-144 3.35e-58

ribosome maturation protein RimP; Reviewed


Pssm-ID: 234627 [Multi-domain]  Cd Length: 154  Bit Score: 178.07  E-value: 3.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   1 MQLTELIETTVVGLGYELVDLERT---GRGMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENI---DYeRLEVSSPGLDR 74
Cdd:PRK00092   7 EQLTELIEPVVEALGYELVDVEYVkegRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPipgAY-TLEVSSPGLDR 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  75 PLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaAMLDFTLADMDKARLVPK 144
Cdd:PRK00092  86 PLKKARDFRRFIGREVKVKLYEPIDGRKKFQGILLAVDGETVTLEVEGKE--KEVEIPLDNIAKARLVVE 153
RimP COG0779
Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];
2-144 4.62e-54

Ribosome maturation factor RimP [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440542 [Multi-domain]  Cd Length: 151  Bit Score: 167.22  E-value: 4.62e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   2 QLTELIETTVVGLGYELVDLERTGRG---MLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPL 76
Cdd:COG0779    7 RLEELLEPVLEELGLELVDVEVVKEGkrwVLRVYIDKDGGVTLDDCAAVSRALSAVLDVEDPipGAYTLEVSSPGLDRPL 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 492940673  77 KKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaamLDFTLADMDKARLVPK 144
Cdd:COG0779   87 KKPRDFERFIGRLVKVKLREPIDGRKKFTGRLLGVDDDGVTLEVDGKE----VEIPLDDIAKARLVIE 150
PRK14642 PRK14642
ribosome maturation factor RimP;
1-151 8.00e-48

ribosome maturation factor RimP;


Pssm-ID: 237775 [Multi-domain]  Cd Length: 197  Bit Score: 153.09  E-value: 8.00e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   1 MQLTELIETTVVGLGYELVDLERTGRGMLCIYIDQP-------------AGIAIEDCEKVTRQLQHVLTVENIDYERLEV 67
Cdd:PRK14642   1 MALQQIVEQTVTGLGYDLVEIERSAGGLLRVTIDLPwvpptegapvgpeQFVTVEDCEKVTRQLQFALEVDGVDYKRLEV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  68 SSPGLDRPLKKLADFERFAGSEAVITLKKPLDG---------RKSYRGILH--APQGETI----------GLEFEGKEGA 126
Cdd:PRK14642  81 SSPGIDRPLRHEQDFERFAGEVIDITLKAPIGAaaggqvsanRKKFRGTLEraESGGWQIvwsdeppvkpGQRVSKKRVP 160

                        170       180
                 ....*....|....*....|....*...
gi 492940673 127 A---MLDFTLADMDKARLVPKVDFRSRK 151
Cdd:PRK14642 161 AplqALGFTLDELREARLAPIVDFKGRG 188
PRK14640 PRK14640
hypothetical protein; Provisional
 2-146 3.69e-35

hypothetical protein; Provisional


Pssm-ID: 173103 [Multi-domain]  Cd Length: 152  Bit Score: 119.34  E-value: 3.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   2 QLTELIETTVVGLGYELVDLE--RTGR-GMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENIDYER--LEVSSPGLDRPL 76
Cdd:PRK14640   7 RLTDLLEAPVVALGFELWGIEfiRAGKhSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEyyLEVSSPGLDRPL 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  77 KKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaAMLDFTlaDMDKARLVPKVD 146
Cdd:PRK14640  87 FKVAQFEKYVGQEAAVTLRMATNNRRKFKGVIKAVQGDMITLTVDGKD--EVLAFT--NIQKANIVPNFG 152
PRK14647 PRK14647
ribosome maturation factor RimP;
2-130 5.95e-26

ribosome maturation factor RimP;


Pssm-ID: 173110 [Multi-domain]  Cd Length: 159  Bit Score: 95.97  E-value: 5.95e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   2 QLTELIETTVVGLGYELVDLE--RTGRGM-LCIYIDQPAGIAIEDCEKVTRQLQHVLTVENIDYER--LEVSSPGLDRPL 76
Cdd:PRK14647   9 RVTELAEQVLSSLGLELVELEykREGREMvLRLFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERytLEVSSPGLDRPL 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  77 KKLADFERFAGSEAVITLKKPL-----DGRKSYRGILHAPQGETIGLEF-EGKEGAAMLD 130
Cdd:PRK14647  89 KKEADYERYAGRLVKVRTFELLadeagNKRKTFLGELEGLADGVVTIALkEGQQARIPLD 148
PRK14636 PRK14636
ribosome maturation protein RimP;
3-142 4.95e-24

ribosome maturation protein RimP;


Pssm-ID: 237773 [Multi-domain]  Cd Length: 176  Bit Score: 91.77  E-value: 4.95e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   3 LTELIETTVVGLGYELVDLERTGRG---MLCIYIDQPAG--IAIEDCEKVTRQLQHVL-TVENI-DYERLEVSSPGLDRP 75
Cdd:PRK14636   7 LTALIEPEAKALGLDLVRVAMFGGKsdpTLQIMAERPDTrqLVIEDCAALSRRLSDVFdELDPIeDAYRLEVSSPGIDRP 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 492940673  76 LKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLefeGKEGAAMLDFTLADMDKARLV 142
Cdd:PRK14636  87 LTRPKDFADWAGHEARIALSEPLDGRKQFRGELKGIDGDTVTI---ADNKAGEVILPFAAIESAKLI 150
YlxS_C cd01734
Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown ...
 71-144 1.05e-21

Bacillus subtilis YxlS-like, C-terminal domain; YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold. The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.


Pssm-ID: 212481  Cd Length: 72  Bit Score: 82.49  E-value: 1.05e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 492940673  71 GLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEgaaMLDFTLADMDKARLVPK 144
Cdd:cd01734    1 GLDRPLKKPEDFERFIGKEVKVKLKEPIDGRKKFTGELLGVDDDTVTLEVDDGK---EVEIPFDNIAKARLVPE 71
RimP_N pfam02576
RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation ...
 6-73 3.62e-18

RimP N-terminal domain; This entry represents the N-terminal domain of the ribosome maturation factor RimP (also known as yhbC). RimP facilitates the maturation of the 30S ribosomal subunit. The N-terminal domain contains two alpha-helices and a three-stranded beta-sheet. It is suggested that the N-terminal domain of SP14.3 (RimP orthologue) could function as a protein module that binds to other proteins, especially those that contain highly positively charged surfaces..


Pssm-ID: 460600  Cd Length: 73  Bit Score: 73.40  E-value: 3.62e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492940673    6 LIETTVVGLGYELVDLERTGRG---MLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENIDYE--RLEVSSPGLD 73
Cdd:pfam02576   1 LIEPVVESLGFELVDVEFVKEGggwTLRIYIDKDGGVTIDDCAKVSRAISAVLDVEDPISGeyTLEVSSPGLD 73
PRK14632 PRK14632
ribosome maturation factor RimP;
15-116 1.05e-14

ribosome maturation factor RimP;


Pssm-ID: 173095 [Multi-domain]  Cd Length: 172  Bit Score: 67.40  E-value: 1.05e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  15 GYELVDlerTGRGMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENI--DYERLEVSSPGLDRPLKKLADFERFAGSEAVI 92
Cdd:PRK14632  27 GIELSY---GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVisSAYVLEVSSPGLERPFFRAEQMSPYVGRQIEL 103

                         90       100
                 ....*....|....*....|....*..
gi 492940673  93 TLKKP---LDGRKSYRGILHAPQGETI 116
Cdd:PRK14632 104 TLIDPtpeWPGRRKFRGELLAVEGDTV 130
PRK14631 PRK14631
ribosome maturation factor RimP;
2-142 1.14e-14

ribosome maturation factor RimP;


Pssm-ID: 237772 [Multi-domain]  Cd Length: 174  Bit Score: 67.22  E-value: 1.14e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   2 QLTELIETTVVGLGYELVDLE---RTGRGMLCIYIDQPA------------------GIAIEDCEKVTRQLQHVLTVEN- 59
Cdd:PRK14631   9 ALTDIIAPAVAACGVDLWGIEflpQGKRSLLRIYIDRLVeenaepvinedgeveqgrGIGVEDCVRVTQQVGAMLDVHDp 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  60 IDYER-LEVSSPGLDRPLKKLADFERFAGSEAVITLKKPLDGRKSYRGILHA--PQGETIGLEFEGKEgaaMLDFTLADM 136
Cdd:PRK14631  89 ISGEYaLEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRRKFQAKLLAvdLENEEIQVEVEGKH---VLDIDSNNI 165


                 ....*.
gi 492940673 137 DKARLV 142
Cdd:PRK14631 166 DKANLI 171
PRK14638 PRK14638
ribosome maturation factor RimP;
14-147 5.05e-14

ribosome maturation factor RimP;


Pssm-ID: 184777 [Multi-domain]  Cd Length: 150  Bit Score: 64.88  E-value: 5.05e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  14 LGYELVD--LERTGRG-MLCIYIDQPAG-IAIEDCEKVTRQLQHVLTVEN-IDYER-LEVSSPGLDRPLKKLADFERFAG 87
Cdd:PRK14638  21 QGLEIFDvqYRRESRGwVLRIIIDNPVGyVSVRDCELFSREIERFLDREDlIEHSYtLEVSSPGLDRPLRGPKDYVRFTG 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  88 SEAVITLKkplDGrKSYRGILHAPQGETIGLEFEGKegaaMLDFTLADMDKARLvpKVDF 147
Cdd:PRK14638 101 KLAKIVTK---DG-KTFIGRIESFVDGTITISDEKE----KYEINIDDVKRANL--EVEF 150
DUF150_C pfam17384
RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.
 76-144 1.16e-13

RimP C-terminal SH3 domain; This family represents the C-terminal domain from RimP.


Pssm-ID: 465408  Cd Length: 67  Bit Score: 61.87  E-value: 1.16e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 492940673   76 LKKLADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFEGKEGAAmldFTLADMDKARLVPK 144
Cdd:pfam17384   1 LFTAEHFARFIGELVKVKLKLPIDGRKKFQGKIVAVDGETITLEVDGKTEVT---IPFDDIDKARLVPE 66
PRK14633 PRK14633
ribosome maturation factor RimP;
3-143 2.32e-13

ribosome maturation factor RimP;


Pssm-ID: 173096 [Multi-domain]  Cd Length: 150  Bit Score: 63.45  E-value: 2.32e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   3 LTELIETTVVGLGYELVDLERTGRGMLCI--YIDQPAGIAIEDCEKVTRQLQHVLTVEN--IDYERLEVSSPGLDRPLKK 78
Cdd:PRK14633   6 LYEIVEPITADLGYILWGIEVVGSGKLTIriFIDHENGVSVDDCQIVSKEISAVFDVEDpvSGKYILEVSSPGMNRQIFN 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 492940673  79 LADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGLEFE-GKEgaamLDFTLADMDKARLVP 143
Cdd:PRK14633  86 IIQAQALVGFNVKAVTLAPVGSQTKFKGVLERVEGNNVILNLEdGKE----ISFDFDELKKLRVSP 147
PRK14639 PRK14639
ribosome maturation factor RimP;
15-140 2.70e-12

ribosome maturation factor RimP;


Pssm-ID: 173102 [Multi-domain]  Cd Length: 140  Bit Score: 60.22  E-value: 2.70e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  15 GYELVDLE---RTGRGMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVE---NIDYErLEVSSPGLDRPLKKLADFERFAGS 88
Cdd:PRK14639  11 GVSFYDDElvsENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEppvSGEYF-LEVSSPGLERKLSKIEHFAKSIGE 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 492940673  89 EAVITLKKpldgRKSYRGILHAPQGETIGLEFEGKEGAAMLDFTlaDMDKAR 140
Cdd:PRK14639  90 LVKITTNE----KEKFEGKIVSVDDENITLENLENKEKTTINFN--DIKKAK 135
PRK14637 PRK14637
ribosome maturation factor RimP;
8-143 9.30e-12

ribosome maturation factor RimP;


Pssm-ID: 237774 [Multi-domain]  Cd Length: 151  Bit Score: 59.11  E-value: 9.30e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   8 ETTVVGLGYELVDLER---TGRGMLCIYIDQPAGIAIEDCEKVTR----QLQHVLTVENIdyeRLEVSSPGLDRPLKKLA 80
Cdd:PRK14637  15 EPVVEGLGCKLVDLSRrvqQAQGRVRAVIYSAGGVGLDDCARVHRilvpRLEALGGVRDV---FLEVSSPGIERVIKNAA 91

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 492940673  81 DFERFAGSEAVITLKKPLDGRksyRGILHAPQGETIGLEFEGKEgaamLDFTLADMDKARLVP 143
Cdd:PRK14637  92 EFSIFVGETVKVWFECTGQWQ---VGTIAEADETCLVLTSDGVP----VTIPYVQITKAQLHP 147
PRK14645 PRK14645
ribosome maturation factor RimP;
1-124 1.27e-10

ribosome maturation factor RimP;


Pssm-ID: 184780 [Multi-domain]  Cd Length: 154  Bit Score: 56.31  E-value: 1.27e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673   1 MQLTELIETTVVGLGYELVDLERTGRG---MLCIYID----QPagIAIEDCEKVTRQLQ-HVLTVENIDYE-RLEVSSPG 71
Cdd:PRK14645   9 PDLQQLAEGALEPLGYEVLEVQVQRSGgkrIVLVRIDrkdeQP--VTVEDLERASRALEaELDRLDPIEGEyRLEVESPG 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 492940673  72 LDRPLKKLADFERFAGSEAvitlkKPLDGRKSYRGILHAPQGETIGLEFEGKE 124
Cdd:PRK14645  87 PKRPLFTARHFERFAGLKA-----KVRGPGENFTGRIKAVSGDQVTFDVGGED 134
PRK02001 PRK02001
ribosome assembly cofactor RimP;
16-124 5.84e-10

ribosome assembly cofactor RimP;


Pssm-ID: 179358 [Multi-domain]  Cd Length: 152  Bit Score: 54.21  E-value: 5.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  16 YELVDLERTGRGMLCIYIDQPAGIAIEDCEKVTRQLQHVLTVENIDYErLEVSSPGLDRPLKKLADFERFAGSEAVITLK 95
Cdd:PRK02001  20 LFLVDLTISPDNKIVVEIDGDEGVWIEDCVELSRAIEHNLDREEEDFE-LEVGSAGLTSPLKVPRQYKKNIGRELEVLTK 98

                         90       100
                 ....*....|....*....|....*....
gi 492940673  96 kplDGRKsYRGILHAPQGETIGLEFEGKE 124
Cdd:PRK02001  99 ---NGKK-IEGELKSADENDITLEVKARE 123
PRK14644 PRK14644
hypothetical protein; Provisional
 41-123 1.43e-06

hypothetical protein; Provisional


Pssm-ID: 184779 [Multi-domain]  Cd Length: 136  Bit Score: 44.83  E-value: 1.43e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 492940673  41 IEDCEKVTRQLQHVLTVENIDYER--LEVSSPGLDRPLKKlADFERFAGSEAVITLKKPLDGRKSYRGILHAPQGETIGL 118
Cdd:PRK14644  38 LKDIEELTKEISDFIDNLSVEFDFdsLDISSPGFDMDYET-DELENHIGEIIDVSLNKEVNKTDFITGELLENNPETITL 116


                 ....*
gi 492940673 119 EFEGK 123
Cdd:PRK14644 117 KWNCK 121
PRK14635 PRK14635
ribosome maturation factor RimP;
33-87 3.52e-03

ribosome maturation factor RimP;


Pssm-ID: 184774 [Multi-domain]  Cd Length: 162  Bit Score: 36.04  E-value: 3.52e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 492940673  33 IDQPAG-IAIEDCEKVTRQLQHVLT--VENIDYErLEVSSPGLDRPLKKLADFERFAG 87
Cdd:PRK14635  43 LEHPYGsVSLLECEQVSRKLKEELEriSPDLDFT-LKVSSAGAERKLRLPEDLDRFRG 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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