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Concise Results
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MULTISPECIES: AsmA family protein [Brucella]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
23-497
6.77e-57
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 205.66
E-value: 6.77e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 23 P PFV DW SGY R ADF ER EA S RIL GR P VT VA GD V S AR L L P F P S VT FS DV RVGADAA --- H P VMTVD R FSM D AE L M P F L R G Q L L 99
Cdd:COG2982 26 P LLF DW NRL R PLI ER QV S EAT GR E VT ID GD L S LS L F P W P G VT LG DV TLSNPDG fgg P P LASAE R LEL D LA L L P L L S G E L E 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 100 IFDMRVER P RVTISL D K DG KVD W AIRPSTPLDPT ------- KIGVE RL S I N DG VVTLREE ASG RSD T ASA LN AV LS AN SL 172
Cdd:COG2982 106 VDEITLDG P VINLER D A DG RAN W DFLLAAAAAAA daeasaw SLDIG RL E I T DG RLVYDDA ASG ADL T LDD LN LT LS GP SL 185
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 173 A GP WQAN GS FV L R G EKFAI D LSS G EAKPD G VLRVRARVSPDGFPAIFETDG D V A MT DG R L DYA G d F SLR ss D MV A TA G LK 252
Cdd:COG2982 186 D GP FRLS GS GR L N G QPLTL D GKI G GLLAL G PYPLKLDLRSGDLRLSLDGTV D L A GL DG Q L ALS G - P SLR -- D LL A LL G VT 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 253 K P AEK PF fsdl RV SG KFK AD RE R FDVSEFRMEQ G PA D npyv VD G SALIDY G AK P HFEVSADGQQ L FWGPNET A GEEQSVS 332
Cdd:COG2982 263 L P EPG PF ---- SL SG RLT AD GD R LRLEDLKGTL G DS D ---- LT G DLSVTG G DR P ALTGDLASDR L DLDDLLP A APAAAAA 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 333 AM P I A D R i AIARRI L EQLPIPSIPGN V D L RLPAVIA GG TTIRSVMVSAEP D GEDWNIRQFA A D L P G R T k VEAKGK L SV - G 411
Cdd:COG2982 335 GA P A A A R - GLPDAP L DLSALRALDAD V R L SADSLKL GG LPLGDLAAHLTL D DGRLDLDPLS A G L Y G G T - LSGSLT L DA r G 412
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 412 HDFGFRGNMLVASRQPSG L ASW L netvd ESIRK L E G AG f S G KV DL RDGTQRIDD L eiglg KT SL H GS FVREVKGA A QPSI 491
Cdd:COG2982 413 DPPRVALKLSLSGVDLGP L LPD L ----- AGFDR L S G TL - N G DL DL SGTGNSVAA L ----- LA SL N GS ASLSLGDG A ISGL 481
....*.
gi 493106752 492 T L DLKG 497
Cdd:COG2982 482 N L EQLL 487
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
733-1042
2.27e-23
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 105.51
E-value: 2.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 733 PL GIA G ELTAD LA MQGA P SA gmrtl L K L SAP D GSAMA DG VIS L VR gdia AS G KAQ L KTAD L QPFI A TA G YA LP gfg QGLA 812
Cdd:COG2982 201 PL TLD G KIGGL LA LGPY P LK ----- L D L RSG D LRLSL DG TVD L AG ---- LD G QLA L SGPS L RDLL A LL G VT LP --- EPGP 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 813 AN L TSDFQFAKGI LR FPN L V GTL NGDNISARIEANFA D S gl P Q L K G EAKLAS L EMES L AA im LGQD A FEPAK P T A KTIW P 892
Cdd:COG2982 269 FS L SGRLTADGDR LR LED L K GTL GDSDLTGDLSVTGG D R -- P A L T G DLASDR L DLDD L LP -- AAPA A AAAGA P A A ARGL P 344
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 893 RGAFAVRPTLP L LM D MK L NVAEARMD G F g TVTGFSTR L QKTMDG L Q L TE L TGNWA GG Y L M G NVS L RNSDKNALLSTD L KW 972
Cdd:COG2982 345 DAPLDLSALRA L DA D VR L SADSLKLG G L - PLGDLAAH L TLDDGR L D L DP L SAGLY GG T L S G SLT L DARGDPPRVALK L SL 423
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 973 SG AK L NDFYRLED G SAL L G G VVKAS L N L N G S G D SVAAL VG SL G G T A T L DVENFTLQ G FD aka L PGMIAA A 1042
Cdd:COG2982 424 SG VD L GPLLPDLA G FDR L S G TLNGD L D L S G T G N SVAAL LA SL N G S A S L SLGDGAIS G LN --- L EQLLRN A 490
TamB super family
cl34519 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
443-847
3.45e-03
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
COG2911 :Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 41.56
E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 443 RK L EGAGFSGKVD L RDGTQ R I D D L EIGLGKTS L H G SFVRE vkgaaqp SI TLD LK G GMVK S D AL QA L ma FFS SG DGLAF L D 522
Cdd:COG2911 33 GR L CIDELALSAS L DGDRL R L D N L DLDAPEGA L S G LLDLV ------- QA TLD AE G LDLA S S AL DD L -- DLR SG GNRLT L S 103
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 523 G ---- QG L NLAFKAGPVHYQ D ME A ANVD LA LR L H - DG RFDFDRLLISDV A GAT L TATGTY EP FAN tp S GS L DATVLS DD L 597
Cdd:COG2911 104 G nlsa AS L DGDLDLDAPDLA D LA A LLPG LA GS L S g DG LDSLSLDADGTL A QHR L DLDAKG EP ASL -- S LA L SGGLDR DD G 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 598 SRFLS L MANRYPQLP L FRALSMRAAN fp G LFDDSEINIIANAVAPAD G A L KK TL AKNAAAREKSAKPIEANVNKAP G V - G 676
Cdd:COG2911 182 GTLSR L DFLNTGRWG L AAPATLSYDD -- G RVTLGPLCLAGGGSLCLS G T L GG TL DLQLRLKNLPLALLNPFLPDDL G L s G 259
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 677 EIS fsitgksgg MKL DLSG TASGGE G ESE p L QMQMNG T ATSRQ G EAV L A L IG L p S L PLGI A GE - LT A DL AMQ G APSAGMR 755
Cdd:COG2911 260 TLN --------- GDA DLSG GLANPQ G DAS - L SLSGDL T LNDGL G GLP L G L GD L - T L NARL A NG r LT L DL TLD G GGLGTLS 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 756 TLLKLSAP DG SAMADGV islvrgdiaa S G KAQ L KTA DL qpfi A TAGYA LPG FGQG L AAN L TS D FQFA k G I L RF P N L V G T L 835
Cdd:COG2911 329 LSGSVPLA DG LPPSAPL ---------- D G NLR L DNL DL ---- A LLNPL LPG VLER L SGQ L NG D LRLS - G T L AA P Q L N G Q L 393
410
....*....|..
gi 493106752 836 NG D NISARIE A N 847
Cdd:COG2911 394 TL D DGRLKLP A L 405
Name
Accession
Description
Interval
E-value
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
23-497
6.77e-57
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 205.66
E-value: 6.77e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 23 P PFV DW SGY R ADF ER EA S RIL GR P VT VA GD V S AR L L P F P S VT FS DV RVGADAA --- H P VMTVD R FSM D AE L M P F L R G Q L L 99
Cdd:COG2982 26 P LLF DW NRL R PLI ER QV S EAT GR E VT ID GD L S LS L F P W P G VT LG DV TLSNPDG fgg P P LASAE R LEL D LA L L P L L S G E L E 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 100 IFDMRVER P RVTISL D K DG KVD W AIRPSTPLDPT ------- KIGVE RL S I N DG VVTLREE ASG RSD T ASA LN AV LS AN SL 172
Cdd:COG2982 106 VDEITLDG P VINLER D A DG RAN W DFLLAAAAAAA daeasaw SLDIG RL E I T DG RLVYDDA ASG ADL T LDD LN LT LS GP SL 185
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 173 A GP WQAN GS FV L R G EKFAI D LSS G EAKPD G VLRVRARVSPDGFPAIFETDG D V A MT DG R L DYA G d F SLR ss D MV A TA G LK 252
Cdd:COG2982 186 D GP FRLS GS GR L N G QPLTL D GKI G GLLAL G PYPLKLDLRSGDLRLSLDGTV D L A GL DG Q L ALS G - P SLR -- D LL A LL G VT 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 253 K P AEK PF fsdl RV SG KFK AD RE R FDVSEFRMEQ G PA D npyv VD G SALIDY G AK P HFEVSADGQQ L FWGPNET A GEEQSVS 332
Cdd:COG2982 263 L P EPG PF ---- SL SG RLT AD GD R LRLEDLKGTL G DS D ---- LT G DLSVTG G DR P ALTGDLASDR L DLDDLLP A APAAAAA 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 333 AM P I A D R i AIARRI L EQLPIPSIPGN V D L RLPAVIA GG TTIRSVMVSAEP D GEDWNIRQFA A D L P G R T k VEAKGK L SV - G 411
Cdd:COG2982 335 GA P A A A R - GLPDAP L DLSALRALDAD V R L SADSLKL GG LPLGDLAAHLTL D DGRLDLDPLS A G L Y G G T - LSGSLT L DA r G 412
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 412 HDFGFRGNMLVASRQPSG L ASW L netvd ESIRK L E G AG f S G KV DL RDGTQRIDD L eiglg KT SL H GS FVREVKGA A QPSI 491
Cdd:COG2982 413 DPPRVALKLSLSGVDLGP L LPD L ----- AGFDR L S G TL - N G DL DL SGTGNSVAA L ----- LA SL N GS ASLSLGDG A ISGL 481
....*.
gi 493106752 492 T L DLKG 497
Cdd:COG2982 482 N L EQLL 487
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
733-1042
2.27e-23
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 105.51
E-value: 2.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 733 PL GIA G ELTAD LA MQGA P SA gmrtl L K L SAP D GSAMA DG VIS L VR gdia AS G KAQ L KTAD L QPFI A TA G YA LP gfg QGLA 812
Cdd:COG2982 201 PL TLD G KIGGL LA LGPY P LK ----- L D L RSG D LRLSL DG TVD L AG ---- LD G QLA L SGPS L RDLL A LL G VT LP --- EPGP 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 813 AN L TSDFQFAKGI LR FPN L V GTL NGDNISARIEANFA D S gl P Q L K G EAKLAS L EMES L AA im LGQD A FEPAK P T A KTIW P 892
Cdd:COG2982 269 FS L SGRLTADGDR LR LED L K GTL GDSDLTGDLSVTGG D R -- P A L T G DLASDR L DLDD L LP -- AAPA A AAAGA P A A ARGL P 344
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 893 RGAFAVRPTLP L LM D MK L NVAEARMD G F g TVTGFSTR L QKTMDG L Q L TE L TGNWA GG Y L M G NVS L RNSDKNALLSTD L KW 972
Cdd:COG2982 345 DAPLDLSALRA L DA D VR L SADSLKLG G L - PLGDLAAH L TLDDGR L D L DP L SAGLY GG T L S G SLT L DARGDPPRVALK L SL 423
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 973 SG AK L NDFYRLED G SAL L G G VVKAS L N L N G S G D SVAAL VG SL G G T A T L DVENFTLQ G FD aka L PGMIAA A 1042
Cdd:COG2982 424 SG VD L GPLLPDLA G FDR L S G TLNGD L D L S G T G N SVAAL LA SL N G S A S L SLGDGAIS G LN --- L EQLLRN A 490
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
25-223
1.36e-09
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 62.49
E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 25 FV D WSG Y RADFEREA S RILG RP VTVA GD VSAR L L P F P SVTF SD VRVGADAAHPVMT V DRFSMDAE L -- M P F LR G Q LL I FD 102
Cdd:pfam05170 28 LF D PNN Y KPTLQQKV S AATN RP LAIN GD IGRS L F P W P TLSL SD ITLASPQGDATPL V SLEQVKIS L sp L P L LR K Q IE I DS 107
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 103 M R VERPRVTISLD K D G KVD W ----------------- AIR P ST P LDPTKIGVE R LSIND G V VT LREE AS GRSDTASA L N a 165
Cdd:pfam05170 108 I R LDGAELALERL K Q G NWN W qeliqnqqnqasnaptq QPQ P TW P VAAWSLPIG R IQVSN G Q VT IDDK AS QKILKDIN L E - 186
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493106752 166 v L SANS L A GP wqang SF VLRGEKFA idl SS G EAK P DG ------ V LRVRARV S PDGFPAIFE T D G 223
Cdd:pfam05170 187 - L QVST L Y GP ----- SF NWSKITIS --- GK G DQD P QS fgsqvn V TILSGEI S GEALRGSTS T G G 241
AsmA_2
pfam13502 AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. ...
926-1150
1.19e-08
AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. coli.
Pssm-ID: 463902 [Multi-domain]
Cd Length: 226
Bit Score: 56.99
E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 926 F S TR L QKTMD GL Q L TE L TGNWA GG Y L M G NVSL R NSDKNALLST DLK WS G AK L NDFYRLEDGSAL LGG VVKASLN L NGS G D 1005
Cdd:pfam13502 4 V S GK L RPQGG GL R L DK L NLRSP GG K L A G SGEW R TGGGAPRTNL DLK LD G VD L GALLKRLGLPEV LGG KGSLDGS L SWQ G A 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 1006 SVAALVG SL G G TAT LD VE N FTLQ G F D AKA L P gmiaaad A L ED R TPST K K L DAKQF lgiaeka TG QSVFAP G NARF - DF TI 1084
Cdd:pfam13502 84 PLSPDLS SL S G DLD LD LG N GQIL G R D LGL L K ------- T L DF R DLFG K G L AFDSI ------- TG PFSIEN G VVHT d DF KL 149
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493106752 1085 T G GV A RMAA --- AN L KDGDAALLADLQFDLSTFGVSGNGTFTFRNG A -------- GDETGIAPQVAFSLG G HYSQ P T 1150
Cdd:pfam13502 150 D G PA A KLTI kgt VD L DRETLDYNVVVVPPIGASLPVVAAAAGNPGL A afaadkll SPPLEKIIALEYRVT G PWDD P K 226
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
443-847
3.45e-03
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 41.56
E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 443 RK L EGAGFSGKVD L RDGTQ R I D D L EIGLGKTS L H G SFVRE vkgaaqp SI TLD LK G GMVK S D AL QA L ma FFS SG DGLAF L D 522
Cdd:COG2911 33 GR L CIDELALSAS L DGDRL R L D N L DLDAPEGA L S G LLDLV ------- QA TLD AE G LDLA S S AL DD L -- DLR SG GNRLT L S 103
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 523 G ---- QG L NLAFKAGPVHYQ D ME A ANVD LA LR L H - DG RFDFDRLLISDV A GAT L TATGTY EP FAN tp S GS L DATVLS DD L 597
Cdd:COG2911 104 G nlsa AS L DGDLDLDAPDLA D LA A LLPG LA GS L S g DG LDSLSLDADGTL A QHR L DLDAKG EP ASL -- S LA L SGGLDR DD G 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 598 SRFLS L MANRYPQLP L FRALSMRAAN fp G LFDDSEINIIANAVAPAD G A L KK TL AKNAAAREKSAKPIEANVNKAP G V - G 676
Cdd:COG2911 182 GTLSR L DFLNTGRWG L AAPATLSYDD -- G RVTLGPLCLAGGGSLCLS G T L GG TL DLQLRLKNLPLALLNPFLPDDL G L s G 259
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 677 EIS fsitgksgg MKL DLSG TASGGE G ESE p L QMQMNG T ATSRQ G EAV L A L IG L p S L PLGI A GE - LT A DL AMQ G APSAGMR 755
Cdd:COG2911 260 TLN --------- GDA DLSG GLANPQ G DAS - L SLSGDL T LNDGL G GLP L G L GD L - T L NARL A NG r LT L DL TLD G GGLGTLS 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 756 TLLKLSAP DG SAMADGV islvrgdiaa S G KAQ L KTA DL qpfi A TAGYA LPG FGQG L AAN L TS D FQFA k G I L RF P N L V G T L 835
Cdd:COG2911 329 LSGSVPLA DG LPPSAPL ---------- D G NLR L DNL DL ---- A LLNPL LPG VLER L SGQ L NG D LRLS - G T L AA P Q L N G Q L 393
410
....*....|..
gi 493106752 836 NG D NISARIE A N 847
Cdd:COG2911 394 TL D DGRLKLP A L 405
Name
Accession
Description
Interval
E-value
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
23-497
6.77e-57
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 205.66
E-value: 6.77e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 23 P PFV DW SGY R ADF ER EA S RIL GR P VT VA GD V S AR L L P F P S VT FS DV RVGADAA --- H P VMTVD R FSM D AE L M P F L R G Q L L 99
Cdd:COG2982 26 P LLF DW NRL R PLI ER QV S EAT GR E VT ID GD L S LS L F P W P G VT LG DV TLSNPDG fgg P P LASAE R LEL D LA L L P L L S G E L E 105
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 100 IFDMRVER P RVTISL D K DG KVD W AIRPSTPLDPT ------- KIGVE RL S I N DG VVTLREE ASG RSD T ASA LN AV LS AN SL 172
Cdd:COG2982 106 VDEITLDG P VINLER D A DG RAN W DFLLAAAAAAA daeasaw SLDIG RL E I T DG RLVYDDA ASG ADL T LDD LN LT LS GP SL 185
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 173 A GP WQAN GS FV L R G EKFAI D LSS G EAKPD G VLRVRARVSPDGFPAIFETDG D V A MT DG R L DYA G d F SLR ss D MV A TA G LK 252
Cdd:COG2982 186 D GP FRLS GS GR L N G QPLTL D GKI G GLLAL G PYPLKLDLRSGDLRLSLDGTV D L A GL DG Q L ALS G - P SLR -- D LL A LL G VT 262
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 253 K P AEK PF fsdl RV SG KFK AD RE R FDVSEFRMEQ G PA D npyv VD G SALIDY G AK P HFEVSADGQQ L FWGPNET A GEEQSVS 332
Cdd:COG2982 263 L P EPG PF ---- SL SG RLT AD GD R LRLEDLKGTL G DS D ---- LT G DLSVTG G DR P ALTGDLASDR L DLDDLLP A APAAAAA 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 333 AM P I A D R i AIARRI L EQLPIPSIPGN V D L RLPAVIA GG TTIRSVMVSAEP D GEDWNIRQFA A D L P G R T k VEAKGK L SV - G 411
Cdd:COG2982 335 GA P A A A R - GLPDAP L DLSALRALDAD V R L SADSLKL GG LPLGDLAAHLTL D DGRLDLDPLS A G L Y G G T - LSGSLT L DA r G 412
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 412 HDFGFRGNMLVASRQPSG L ASW L netvd ESIRK L E G AG f S G KV DL RDGTQRIDD L eiglg KT SL H GS FVREVKGA A QPSI 491
Cdd:COG2982 413 DPPRVALKLSLSGVDLGP L LPD L ----- AGFDR L S G TL - N G DL DL SGTGNSVAA L ----- LA SL N GS ASLSLGDG A ISGL 481
....*.
gi 493106752 492 T L DLKG 497
Cdd:COG2982 482 N L EQLL 487
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
733-1042
2.27e-23
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 105.51
E-value: 2.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 733 PL GIA G ELTAD LA MQGA P SA gmrtl L K L SAP D GSAMA DG VIS L VR gdia AS G KAQ L KTAD L QPFI A TA G YA LP gfg QGLA 812
Cdd:COG2982 201 PL TLD G KIGGL LA LGPY P LK ----- L D L RSG D LRLSL DG TVD L AG ---- LD G QLA L SGPS L RDLL A LL G VT LP --- EPGP 268
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 813 AN L TSDFQFAKGI LR FPN L V GTL NGDNISARIEANFA D S gl P Q L K G EAKLAS L EMES L AA im LGQD A FEPAK P T A KTIW P 892
Cdd:COG2982 269 FS L SGRLTADGDR LR LED L K GTL GDSDLTGDLSVTGG D R -- P A L T G DLASDR L DLDD L LP -- AAPA A AAAGA P A A ARGL P 344
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 893 RGAFAVRPTLP L LM D MK L NVAEARMD G F g TVTGFSTR L QKTMDG L Q L TE L TGNWA GG Y L M G NVS L RNSDKNALLSTD L KW 972
Cdd:COG2982 345 DAPLDLSALRA L DA D VR L SADSLKLG G L - PLGDLAAH L TLDDGR L D L DP L SAGLY GG T L S G SLT L DARGDPPRVALK L SL 423
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 973 SG AK L NDFYRLED G SAL L G G VVKAS L N L N G S G D SVAAL VG SL G G T A T L DVENFTLQ G FD aka L PGMIAA A 1042
Cdd:COG2982 424 SG VD L GPLLPDLA G FDR L S G TLNGD L D L S G T G N SVAAL LA SL N G S A S L SLGDGAIS G LN --- L EQLLRN A 490
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
25-223
1.36e-09
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 62.49
E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 25 FV D WSG Y RADFEREA S RILG RP VTVA GD VSAR L L P F P SVTF SD VRVGADAAHPVMT V DRFSMDAE L -- M P F LR G Q LL I FD 102
Cdd:pfam05170 28 LF D PNN Y KPTLQQKV S AATN RP LAIN GD IGRS L F P W P TLSL SD ITLASPQGDATPL V SLEQVKIS L sp L P L LR K Q IE I DS 107
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 103 M R VERPRVTISLD K D G KVD W ----------------- AIR P ST P LDPTKIGVE R LSIND G V VT LREE AS GRSDTASA L N a 165
Cdd:pfam05170 108 I R LDGAELALERL K Q G NWN W qeliqnqqnqasnaptq QPQ P TW P VAAWSLPIG R IQVSN G Q VT IDDK AS QKILKDIN L E - 186
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493106752 166 v L SANS L A GP wqang SF VLRGEKFA idl SS G EAK P DG ------ V LRVRARV S PDGFPAIFE T D G 223
Cdd:pfam05170 187 - L QVST L Y GP ----- SF NWSKITIS --- GK G DQD P QS fgsqvn V TILSGEI S GEALRGSTS T G G 241
AsmA_2
pfam13502 AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. ...
926-1150
1.19e-08
AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. coli.
Pssm-ID: 463902 [Multi-domain]
Cd Length: 226
Bit Score: 56.99
E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 926 F S TR L QKTMD GL Q L TE L TGNWA GG Y L M G NVSL R NSDKNALLST DLK WS G AK L NDFYRLEDGSAL LGG VVKASLN L NGS G D 1005
Cdd:pfam13502 4 V S GK L RPQGG GL R L DK L NLRSP GG K L A G SGEW R TGGGAPRTNL DLK LD G VD L GALLKRLGLPEV LGG KGSLDGS L SWQ G A 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 1006 SVAALVG SL G G TAT LD VE N FTLQ G F D AKA L P gmiaaad A L ED R TPST K K L DAKQF lgiaeka TG QSVFAP G NARF - DF TI 1084
Cdd:pfam13502 84 PLSPDLS SL S G DLD LD LG N GQIL G R D LGL L K ------- T L DF R DLFG K G L AFDSI ------- TG PFSIEN G VVHT d DF KL 149
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493106752 1085 T G GV A RMAA --- AN L KDGDAALLADLQFDLSTFGVSGNGTFTFRNG A -------- GDETGIAPQVAFSLG G HYSQ P T 1150
Cdd:pfam13502 150 D G PA A KLTI kgt VD L DRETLDYNVVVVPPIGASLPVVAAAAGNPGL A afaadkll SPPLEKIIALEYRVT G PWDD P K 226
YhdR
COG3164 Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
31-354
2.09e-08
Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
Pssm-ID: 442397 [Multi-domain]
Cd Length: 1289
Bit Score: 58.79
E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 31 YR ADF E REA S RI LG R PVT V a G DV SA RLLPF - P SVTFS DVR VGADAAH P VMTVD R FSMD - AELMPF L R G QLLIFDMRVERP 108
Cdd:COG3164 44 YR PQL E AWL S QA LG V PVT I - G SL SA SWQGL g P VLELR DVR LLDPDGR P ALRLP R VELA l DLWRSL L H G RPRFRRLTLDGL 122
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 109 RVTISL D K DG KVDW A IR P STPLDPTKIG --------- VE R L S IN D GVVTLREEAS G RSD T A S AL N AV L S anslagpwqa N 179
Cdd:COG3164 123 QLDLRR D A DG RWSV A GL P VSGGGDGDDL dalldwllq QG R F S LR D SRLRWLDPSR G PPL T L S IV N LR L R ---------- N 192
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 180 G SFVL R G E kfa IDL S SGE A k PD G V L RV RA RVSPDGFPAIFETD G DV amtdgrld Y A gdf SLRSS D MVATAGLKK P AEKPF 259
Cdd:COG3164 193 G GRRH R L E --- GRA S LPA A - LG G P L DL RA DLRGPDPGDWRGWS G QL -------- Y L --- QADDV D LAPWLPRDL P DNLGL 257
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 260 F S --- D LR VSGKFKAD R E ----- RFDV S EFRMEQGPADN P YVVDGSALIDYGAK --------- P HFEVSA DGQ ------- 315
Cdd:COG3164 258 Q S grg S LR AWLDLRDG R L tsata DLAL S DLSLRLAEDLP P LALQRLSGRLRWQR qgdgwqldl P DLRLAT DGQ awplgdl 337
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 493106752 316 Q L F W G P NETA GEE QSVS ampi ADR IAI A R -- RI L EQ LP IPS 354
Cdd:COG3164 338 S L R W Q P AAGQ GEE LRLR ---- ADR LDL A A la PL L PL LP LLP 374
YhdR
COG3164 Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
139-556
2.87e-07
Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
Pssm-ID: 442397 [Multi-domain]
Cd Length: 1289
Bit Score: 55.32
E-value: 2.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 139 R L SINDGVV TL r EEAS GR sdt ASALNAV LSA NS L agpw QA N gsfv L R G EKFAIDLSS G EAKP DG VL RV RA -- R V S PD G FP 216
Cdd:COG3164 706 D L RLKPLDL TL - TQVR GR --- LRFTEGG LSA EG L ---- QA R ---- L L G GPVTLSIAT G GQAG DG QV RV DL sg R A S AA G LR 773
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 217 A IFETDGDVA - MTD G RLDYAGDF S LR ----------- S SD MVAT ----- A G L K K P A EKPFFSD L R VSG KFKAD R E R F D V S 279
Cdd:COG3164 774 A WLPLPLPLL r RLS G SAPWQAEL S IP lpgggqyeltl T SD LKGL aldlp A P L G K A A GEALPLR L E VSG DPESF R D R L D L S 853
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 280 ------- EFRMEQ G PAD npyvv DGSALIDY G AKPHFEVS A D G QQLFWGPN E TAGEE - QSVSAMPIA D RIAI A RRI L eqlp 351
Cdd:COG3164 854 lgdllna RLLLDK G GGR ----- LLRGALAL G SGAPPLPP A P G LSVSGRLP E LDLDA w LALLSALAG D ASGS A SPL L ---- 924
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 352 ipsi P GNV DLR LPAVIA GG T T IRS V MV SA EPD G ED W NI r Q FAAD lpgrtkv E AK G K L SVGHDF G --- F R GNM ---- L V A S 424
Cdd:COG3164 925 ---- P TRI DLR ADQLDL GG Q T LHD V RL SA RRQ G GG W RL - Q LDSP ------- E LA G T L TWPPAA G agp L R ARL drlh L P A L 992
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 425 RQPSGLASWLNETV D E ------------ SIRK L EGA G FS - G KVD L R ---- DGTQ R I D D L EIGLGKTS L H GS FVREVK G a A 487
Cdd:COG3164 993 EASEAGSAAGEPLA D A dvdprslpaldl VVDD L RLG G RD l G RLE L E arpd GDGL R L D K L RLDSPDAR L T GS GDWRQD G - G 1071
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493106752 488 QPSIT L DL K ggm VK S DA L QA L M A F F SSGDGLA fl D G Q G --- LN L AFKAG P VHY q D MEAANVD L A L R L HD G R F 556
Cdd:COG3164 1072 GSRTR L KG K --- LD S KD L GK L L A R F GYPSPIR -- G G S G kld GD L SWPGS P WQF - D LASLSGS L S L D L GK G Q F 1137
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
937-1053
1.15e-05
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 49.78
E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 937 LQL TE L T G NWA GGYL MGNVS L RN S D K N A LLSTDLKWSGAK L N dfy R L EDGSAL --- LG G VVKASLN L N GSG D SV AA L V GS 1013
Cdd:pfam05170 471 LQL SR L K G GLY GGYL EAGAQ L DL S K K P A TYRLKINAKNIP L K --- P L LPDLFK mfs TD G LLDIDAD L Q GSG N SV KM L I GS 547
90 100 110 120
....*....|....*....|....*....|....*....|
gi 493106752 1014 L G G TAT L DVE N FT L Q G FDAKALPGMIA A ADALEDRTP ST K 1053
Cdd:pfam05170 548 L N G QLK L NLR N GA L S G INVGNILVNGI A GLTSDFGDK ST P 587
AsmA_2
pfam13502 AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. ...
681-845
1.42e-04
AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. coli.
Pssm-ID: 463902 [Multi-domain]
Cd Length: 226
Bit Score: 44.66
E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 681 SITGK S G G M KL DL SG TASG G E G ES epl QMQMNGTATSRQGE A V L ALI GLP S l P LG IA G E L TAD L AM QGAP - S AGMRT L lk 759
Cdd:pfam13502 19 KLNLR S P G G KL AG SG EWRT G G G AP --- RTNLDLKLDGVDLG A L L KRL GLP E - V LG GK G S L DGS L SW QGAP l S PDLSS L -- 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 760 lsap D G sama D GVIS L VR G D I AASGKAQ LKT A D LQPF iatagyalpg FG Q GLA AN - L T SD F QFAK G ILRFPNL vg T L N G D 838
Cdd:pfam13502 93 ---- S G ---- D LDLD L GN G Q I LGRDLGL LKT L D FRDL ---------- FG K GLA FD s I T GP F SIEN G VVHTDDF -- K L D G P 152
....*..
gi 493106752 839 NISAR I E 845
Cdd:pfam13502 153 AAKLT I K 159
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
443-847
3.45e-03
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 41.56
E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 443 RK L EGAGFSGKVD L RDGTQ R I D D L EIGLGKTS L H G SFVRE vkgaaqp SI TLD LK G GMVK S D AL QA L ma FFS SG DGLAF L D 522
Cdd:COG2911 33 GR L CIDELALSAS L DGDRL R L D N L DLDAPEGA L S G LLDLV ------- QA TLD AE G LDLA S S AL DD L -- DLR SG GNRLT L S 103
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 523 G ---- QG L NLAFKAGPVHYQ D ME A ANVD LA LR L H - DG RFDFDRLLISDV A GAT L TATGTY EP FAN tp S GS L DATVLS DD L 597
Cdd:COG2911 104 G nlsa AS L DGDLDLDAPDLA D LA A LLPG LA GS L S g DG LDSLSLDADGTL A QHR L DLDAKG EP ASL -- S LA L SGGLDR DD G 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 598 SRFLS L MANRYPQLP L FRALSMRAAN fp G LFDDSEINIIANAVAPAD G A L KK TL AKNAAAREKSAKPIEANVNKAP G V - G 676
Cdd:COG2911 182 GTLSR L DFLNTGRWG L AAPATLSYDD -- G RVTLGPLCLAGGGSLCLS G T L GG TL DLQLRLKNLPLALLNPFLPDDL G L s G 259
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 677 EIS fsitgksgg MKL DLSG TASGGE G ESE p L QMQMNG T ATSRQ G EAV L A L IG L p S L PLGI A GE - LT A DL AMQ G APSAGMR 755
Cdd:COG2911 260 TLN --------- GDA DLSG GLANPQ G DAS - L SLSGDL T LNDGL G GLP L G L GD L - T L NARL A NG r LT L DL TLD G GGLGTLS 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493106752 756 TLLKLSAP DG SAMADGV islvrgdiaa S G KAQ L KTA DL qpfi A TAGYA LPG FGQG L AAN L TS D FQFA k G I L RF P N L V G T L 835
Cdd:COG2911 329 LSGSVPLA DG LPPSAPL ---------- D G NLR L DNL DL ---- A LLNPL LPG VLER L SGQ L NG D LRLS - G T L AA P Q L N G Q L 393
410
....*....|..
gi 493106752 836 NG D NISARIE A N 847
Cdd:COG2911 394 TL D DGRLKLP A L 405
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
