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Conserved domains on  [gi|493179136|ref|WP_006178060|]
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MULTISPECIES: outer membrane protein assembly factor BamE [Enterobacter]

Protein Classification

outer membrane protein assembly factor BamE( domain architecture ID 10013829)

outer membrane protein assembly factor BamE is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11548 PRK11548
outer membrane protein assembly factor BamE;
1-112 5.06e-84

outer membrane protein assembly factor BamE;


:

Pssm-ID: 183190  Cd Length: 113  Bit Score: 240.05  E-value: 5.06e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493179136   1 MRCKTLTAAAAVLLMLTAGCSTLEKVVYRPDINQGNYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQ 80
Cdd:PRK11548   1 MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPNDVAKIHVGMTQQQVAYTLGTPMMQDPFGTNTWFYVFRQQ 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 493179136  81 PGHENVTQQTLTLTFSSAGVLTNIDNKPALTK 112
Cdd:PRK11548  81 PGHEKVTQQTLTLTFNSSGVLTNIDNKPALTG 112
 
Name Accession Description Interval E-value
PRK11548 PRK11548
outer membrane protein assembly factor BamE;
1-112 5.06e-84

outer membrane protein assembly factor BamE;


Pssm-ID: 183190  Cd Length: 113  Bit Score: 240.05  E-value: 5.06e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493179136   1 MRCKTLTAAAAVLLMLTAGCSTLEKVVYRPDINQGNYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQ 80
Cdd:PRK11548   1 MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPNDVAKIHVGMTQQQVAYTLGTPMMQDPFGTNTWFYVFRQQ 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 493179136  81 PGHENVTQQTLTLTFSSAGVLTNIDNKPALTK 112
Cdd:PRK11548  81 PGHEKVTQQTLTLTFNSSGVLTNIDNKPALTG 112
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
1-110 2.55e-45

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 142.87  E-value: 2.55e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493179136   1 MRCKTLTAAAAVLLMLTAGCSTLekvVYRPDINQGNYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQ 80
Cdd:COG2913    1 MRKLRLLLLALLLALLLAGCSSF---VYKIDIQQGNVVTQEDLAQLKPGMTKEQVRYLLGTPSLTDTFHPNRWYYVYSFR 77
                         90       100       110
                 ....*....|....*....|....*....|
gi 493179136  81 PGHENVTQQTLTLTFSSAGVLTNIDNKPAL 110
Cdd:COG2913   78 RGGKEVEQRVLAVYFDDDGRVARIEGDGKT 107
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
36-104 2.68e-31

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 105.35  E-value: 2.68e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493179136   36 NYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQPGHENVTQQTLTLTFSSAGVLTNI 104
Cdd:pfam04355   1 NYVTQEDVDQLKPGMTREQVRYLLGTPSLVDTFDDDRWYYVYNFRRGGGAVEQQVLTVYFDDDGLVRNI 69
 
Name Accession Description Interval E-value
PRK11548 PRK11548
outer membrane protein assembly factor BamE;
1-112 5.06e-84

outer membrane protein assembly factor BamE;


Pssm-ID: 183190  Cd Length: 113  Bit Score: 240.05  E-value: 5.06e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493179136   1 MRCKTLTAAAAVLLMLTAGCSTLEKVVYRPDINQGNYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQ 80
Cdd:PRK11548   1 MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPNDVAKIHVGMTQQQVAYTLGTPMMQDPFGTNTWFYVFRQQ 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 493179136  81 PGHENVTQQTLTLTFSSAGVLTNIDNKPALTK 112
Cdd:PRK11548  81 PGHEKVTQQTLTLTFNSSGVLTNIDNKPALTG 112
BamE COG2913
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex ...
1-110 2.55e-45

Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442157  Cd Length: 128  Bit Score: 142.87  E-value: 2.55e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493179136   1 MRCKTLTAAAAVLLMLTAGCSTLekvVYRPDINQGNYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQ 80
Cdd:COG2913    1 MRKLRLLLLALLLALLLAGCSSF---VYKIDIQQGNVVTQEDLAQLKPGMTKEQVRYLLGTPSLTDTFHPNRWYYVYSFR 77
                         90       100       110
                 ....*....|....*....|....*....|
gi 493179136  81 PGHENVTQQTLTLTFSSAGVLTNIDNKPAL 110
Cdd:COG2913   78 RGGKEVEQRVLAVYFDDDGRVARIEGDGKT 107
SmpA_OmlA pfam04355
SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in ...
36-104 2.68e-31

SmpA / OmlA family; Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).


Pssm-ID: 461271  Cd Length: 69  Bit Score: 105.35  E-value: 2.68e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493179136   36 NYLTPNDVSKIRVGMTQQQVAYALGTPMMSDPFGTNTWFYVFRQQPGHENVTQQTLTLTFSSAGVLTNI 104
Cdd:pfam04355   1 NYVTQEDVDQLKPGMTREQVRYLLGTPSLVDTFDDDRWYYVYNFRRGGGAVEQQVLTVYFDDDGLVRNI 69
PRK11251 PRK11251
osmotically-inducible lipoprotein OsmE;
8-107 4.23e-06

osmotically-inducible lipoprotein OsmE;


Pssm-ID: 183058  Cd Length: 109  Bit Score: 41.97  E-value: 4.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493179136   8 AAAAVLLMLtAGCSTLEKvvyrpdiNQGNYLTPNdVSKIRVGMTQQQVAYALGTP----MMSDPFGT-NTwfYVFRQQPG 82
Cdd:PRK11251   7 SAAAVLTML-AGCTAYDR-------NPVQFVEPV-VKDVKKGMTRQQVAQIAGKPssevSMIHARGTcQT--YILGNRDG 75
                         90       100
                 ....*....|....*....|....*
gi 493179136  83 HenvtQQTLTLTFSSAGvltNIDNK 107
Cdd:PRK11251  76 K----AQTYFVSFDDTG---HVDNK 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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