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Conserved domains on  [gi|493277038|ref|WP_006234831|]
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MULTISPECIES: galactose-6-phosphate isomerase subunit LacB [Collinsella]

Protein Classification

galactose-6-phosphate isomerase subunit LacB( domain architecture ID 10013100)

galactose-6-phosphate isomerase subunit LacB catalyzes the formation of D-tagatose 6-phosphate from D-galactose 6-phosphate

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08622 PRK08622
galactose-6-phosphate isomerase subunit LacB; Reviewed
 1-174 5.13e-108

galactose-6-phosphate isomerase subunit LacB; Reviewed


:

Pssm-ID: 181506  Cd Length: 171  Bit Score: 305.42  E-value: 5.13e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   1 MKktIAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKV 80
Cdd:PRK08622   1 MK--IAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038  81 PGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHDALIAKIDACNKADAEaQADPHFF 160
Cdd:PRK08622  79 PGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKPTEENKKLIEKIDHLEKPNAD-QANPHFF 157

                        170
                 ....*....|....
gi 493277038 161 DEFLEKWDRGEYHD 174
Cdd:PRK08622 158 DEFLEKWDRGEYHD 171
 
Name Accession Description Interval E-value
PRK08622 PRK08622
galactose-6-phosphate isomerase subunit LacB; Reviewed
 1-174 5.13e-108

galactose-6-phosphate isomerase subunit LacB; Reviewed


Pssm-ID: 181506  Cd Length: 171  Bit Score: 305.42  E-value: 5.13e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   1 MKktIAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKV 80
Cdd:PRK08622   1 MK--IAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038  81 PGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHDALIAKIDACNKADAEaQADPHFF 160
Cdd:PRK08622  79 PGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKPTEENKKLIEKIDHLEKPNAD-QANPHFF 157

                        170
                 ....*....|....
gi 493277038 161 DEFLEKWDRGEYHD 174
Cdd:PRK08622 158 DEFLEKWDRGEYHD 171
lacB TIGR01119
galactose-6-phosphate isomerase, LacB subunit; This family contains four members from low GC ...
 5-174 2.74e-90

galactose-6-phosphate isomerase, LacB subunit; This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway. [Energy metabolism, Biosynthesis and degradation of polysaccharides]


Pssm-ID: 130189  Cd Length: 171  Bit Score: 260.67  E-value: 2.74e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:TIGR01119   3 IAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVNKVPGVR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHDALIAKIDACNKADAEaQADPHFFDEFL 164
Cdd:TIGR01119  83 SALVRDMTSALYAKEELNANVIGFGGAIIGKLLMFDIIDAFIKAEYKPTEENKKLIAKIKHLETHNAK-QADPHFFDEFL 161

                         170
                  ....*....|
gi 493277038  165 EKWDRGEYHD 174
Cdd:TIGR01119 162 EKWDRGEYHD 171
RpiB COG0698
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ...
 1-149 1.65e-55

Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 440462  Cd Length: 149  Bit Score: 171.81  E-value: 1.65e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   1 MKktIAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKV 80
Cdd:COG0698    1 MK--IAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSEDSVDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKV 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493277038  81 PGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEkTPEHDALIAKIDACNKA 149
Cdd:COG0698   79 PGIRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEFE-GGRHQRRVDKISELEKE 146
LacAB_rpiB pfam02502
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ...
 5-131 2.27e-54

Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).


Pssm-ID: 460573  Cd Length: 134  Bit Score: 168.33  E-value: 2.27e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:pfam02502   1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYSEESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGIR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 493277038   85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYE 131
Cdd:pfam02502  81 AALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEFE 127
 
Name Accession Description Interval E-value
PRK08622 PRK08622
galactose-6-phosphate isomerase subunit LacB; Reviewed
 1-174 5.13e-108

galactose-6-phosphate isomerase subunit LacB; Reviewed


Pssm-ID: 181506  Cd Length: 171  Bit Score: 305.42  E-value: 5.13e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   1 MKktIAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKV 80
Cdd:PRK08622   1 MK--IAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVNKV 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038  81 PGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHDALIAKIDACNKADAEaQADPHFF 160
Cdd:PRK08622  79 PGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKPTEENKKLIEKIDHLEKPNAD-QANPHFF 157

                        170
                 ....*....|....
gi 493277038 161 DEFLEKWDRGEYHD 174
Cdd:PRK08622 158 DEFLEKWDRGEYHD 171
lacB TIGR01119
galactose-6-phosphate isomerase, LacB subunit; This family contains four members from low GC ...
 5-174 2.74e-90

galactose-6-phosphate isomerase, LacB subunit; This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway. [Energy metabolism, Biosynthesis and degradation of polysaccharides]


Pssm-ID: 130189  Cd Length: 171  Bit Score: 260.67  E-value: 2.74e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:TIGR01119   3 IAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVNKVPGVR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHDALIAKIDACNKADAEaQADPHFFDEFL 164
Cdd:TIGR01119  83 SALVRDMTSALYAKEELNANVIGFGGAIIGKLLMFDIIDAFIKAEYKPTEENKKLIAKIKHLETHNAK-QADPHFFDEFL 161

                         170
                  ....*....|
gi 493277038  165 EKWDRGEYHD 174
Cdd:TIGR01119 162 EKWDRGEYHD 171
PRK12615 PRK12615
galactose-6-phosphate isomerase subunit LacB; Reviewed
 5-174 4.40e-89

galactose-6-phosphate isomerase subunit LacB; Reviewed


Pssm-ID: 171610  Cd Length: 171  Bit Score: 257.65  E-value: 4.40e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:PRK12615   3 IAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVNKVPGIR 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038  85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHDALIAKIDACNKADAEaQADPHFFDEFL 164
Cdd:PRK12615  83 SALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKETEENKKLIAKIAHLESHHAN-QEDPDFFTEFL 161

                        170
                 ....*....|
gi 493277038 165 EKWDRGEYHD 174
Cdd:PRK12615 162 EKWDRGEYHD 171
RpiB COG0698
Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate ...
 1-149 1.65e-55

Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]; Ribose 5-phosphate isomerase RpiB is part of the Pathway/BioSystem: Pentose phosphate pathway


Pssm-ID: 440462  Cd Length: 149  Bit Score: 171.81  E-value: 1.65e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   1 MKktIAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKV 80
Cdd:COG0698    1 MK--IAIGSDHAGFELKEAIKEYLEEKGHEVVDFGTYSEDSVDYPDFAIKVAEAVASGEADRGILICGTGIGMSIAANKV 78

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493277038  81 PGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEkTPEHDALIAKIDACNKA 149
Cdd:COG0698   79 PGIRAALCHDPYSARLAREHNDANVLCLGARVIGPELAKEIVDAFLATEFE-GGRHQRRVDKISELEKE 146
LacAB_rpiB pfam02502
Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ...
 5-131 2.27e-54

Ribose/Galactose Isomerase; This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).


Pssm-ID: 460573  Cd Length: 134  Bit Score: 168.33  E-value: 2.27e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:pfam02502   1 IAIGSDHAGFELKEEIKEYLEEKGHEVIDFGTYSEESVDYPDYAHKVAEAVASGEADRGILICGTGIGMSIAANKVPGIR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 493277038   85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYE 131
Cdd:pfam02502  81 AALCHDPYSAKLAREHNDANVLCLGARVIGPELAKEIVDAFLNTEFE 127
PRK05571 PRK05571
ribose-5-phosphate isomerase B; Provisional
 3-145 5.25e-40

ribose-5-phosphate isomerase B; Provisional


Pssm-ID: 235509  Cd Length: 148  Bit Score: 132.59  E-value: 5.25e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   3 KTIAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHT-RTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVP 81
Cdd:PRK05571   1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDaSVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVK 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 493277038  82 GARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKtPEHDALIAKIDA 145
Cdd:PRK05571  81 GIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEG-GRHQRRIDKIDE 143
PTZ00215 PTZ00215
ribose 5-phosphate isomerase; Provisional
 1-145 1.05e-39

ribose 5-phosphate isomerase; Provisional


Pssm-ID: 185516  Cd Length: 151  Bit Score: 131.68  E-value: 1.05e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   1 MKKTIAIGCDHIVTDEKIYLADRLEQAG--YKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVN 78
Cdd:PTZ00215   1 MQKKVAIGSDHAGFDLKNEIIDYIKNKGkeYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGISIAAN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493277038  79 KVPGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTpEHDALIAKIDA 145
Cdd:PTZ00215  81 KVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEGG-RHTERIDKISA 146
rpiB_lacA_lacB TIGR00689
sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family ...
 5-145 7.40e-34

sugar-phosphate isomerase, RpiB/LacA/LacB family; Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway.


Pssm-ID: 129772  Cd Length: 144  Bit Score: 116.71  E-value: 7.40e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:TIGR00689   1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493277038   85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTpEHDALIAKIDA 145
Cdd:TIGR00689  81 AALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEGG-RHQRRIDKIIE 140
rpiB TIGR01120
ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate ...
 5-145 1.14e-31

ribose 5-phosphate isomerase B; Involved in the non-oxidative branch of the pentose phospate pathway. [Energy metabolism, Pentose phosphate pathway]


Pssm-ID: 130190  Cd Length: 143  Bit Score: 111.16  E-value: 1.14e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHTRTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGAR 84
Cdd:TIGR01120   2 IAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGIR 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 493277038   85 CALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTpEHDALIAKIDA 145
Cdd:TIGR01120  82 AALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEGG-RHQQRVEAITA 141
RPI_actino TIGR02133
ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily ...
 5-145 7.51e-20

ribose 5-phosphate isomerase; This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.


Pssm-ID: 273989  Cd Length: 148  Bit Score: 80.96  E-value: 7.51e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038    5 IAIGCDHIVTDEKIYLADRLEQAGYKVLDCGTYSHT-RTHYPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGA 83
Cdd:TIGR02133   3 VVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADdDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVKGA 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493277038   84 RCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPYEKTPEHdalIAKIDA 145
Cdd:TIGR02133  83 RAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDARSRH---ARRIDS 141
PRK08621 PRK08621
galactose-6-phosphate isomerase subunit LacA; Reviewed
 4-130 3.40e-07

galactose-6-phosphate isomerase subunit LacA; Reviewed


Pssm-ID: 181505  Cd Length: 142  Bit Score: 47.01  E-value: 3.40e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038   4 TIAIGCDHIVTDEKIYLADRLEQAGYKVLDCgtyshTRTHYPIYGK---AVGEAVASGKADFGVALCGTGIGITNAVNKV 80
Cdd:PRK08621   2 AIIIGADKAGFELKEVVKDYLEDNKYEVVDV-----TEEGAEDFVDstlAVAKEVNKSEDNLGIVIDAYGAGSFMVATKI 76

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 493277038  81 PGARCALVRDMTSALYARRELNANIVGFGGKITGEFLMADIMLAFLEEPY 130
Cdd:PRK08621  77 KGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKY 126
PRK09273 PRK09273
hypothetical protein; Provisional
 11-98 1.87e-04

hypothetical protein; Provisional


Pssm-ID: 181746 [Multi-domain]  Cd Length: 211  Bit Score: 40.33  E-value: 1.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493277038  11 HIVTDEKIYLADRLeqaGYKVLDCGTYSHTRTH--YPIYGKAVGEAVASGKADFGVALCGTGIGITNAVNKVPGARCALV 88
Cdd:PRK09273  16 AIIYEALKKVADPK---GHEVFNYGMYDEEDHQltYVQNGIMASILLNSKAVDFVVTGCGTGQGAMLALNSFPGVVCGYC 92

                         90
                 ....*....|.
gi 493277038  89 RDMTSA-LYAR 98
Cdd:PRK09273  93 IDPTDAyLFAQ 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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