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Conserved domains on  [gi|493356446|ref|WP_006313019|]
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MULTISPECIES: flagellar basal body rod protein FlgC [Agrobacterium]

Protein Classification

flagellar basal body rod protein FlgC( domain architecture ID 11486194)

flagellar basal body rod protein FlgC forms, together with FlgB and FlgF the proximal portion of the central rod at the core of the flagellar organelle's basal body

Gene Ontology:  GO:0071973

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 2-136 5.03e-84

flagellar basal body rod protein FlgC; Reviewed


:

Pssm-ID: 139220  Cd Length: 138  Bit Score: 242.36  E-value: 5.03e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   2 DPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEYD 81
Cdd:PRK12782   3 DPLLASSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRAELDRAAGAASVRVKEIGVDTAPFRVEYD 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493356446  82 PGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:PRK12782  83 PGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDLLR 137
 
Name Accession Description Interval E-value
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 2-136 5.03e-84

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 242.36  E-value: 5.03e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   2 DPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEYD 81
Cdd:PRK12782   3 DPLLASSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRAELDRAAGAASVRVKEIGVDTAPFRVEYD 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493356446  82 PGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:PRK12782  83 PGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDLLR 137
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-136 2.16e-57

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 174.53  E-value: 2.16e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   2 DPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGaDPYRRKTVTFGSELDH-VSGVERVKVKKLGVDRGDFVHEY 80
Cdd:COG1558    1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDG-GPYRRKQVVFEAVLDRaGSGAAGVRVAGIVEDDSPFRLVY 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493356446  81 DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:COG1558   80 DPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 9-136 1.64e-45

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 144.81  E-value: 1.64e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446    9 KIAGSGLEVQSTRLRIVSENIANARSTgDTPGADPYRRKTVTFGSEL--DHVS--GVERVKVKKLGVDRGDFVHEYDPGN 84
Cdd:TIGR01395   5 NVSASALSAQRVRMNVVSSNLANADST-RTPAGDPYRRRRPVFEAELfqDRASrpGGSGVKVAKIVEDDSPFKLVYDPTH 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 493356446   85 PAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:TIGR01395  84 PDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 81-134 1.14e-07

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 46.10  E-value: 1.14e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 493356446   81 DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDL 134
Cdd:pfam06429  21 GAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
 
Name Accession Description Interval E-value
flgC PRK12782
flagellar basal body rod protein FlgC; Reviewed
 2-136 5.03e-84

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 139220  Cd Length: 138  Bit Score: 242.36  E-value: 5.03e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   2 DPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGADPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEYD 81
Cdd:PRK12782   3 DPLLASSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRAELDRAAGAASVRVKEIGVDTAPFRVEYD 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493356446  82 PGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:PRK12782  83 PGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVAMTIDLLR 137
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 2-137 2.29e-67

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 200.05  E-value: 2.29e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   2 DPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGaDPYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEYD 81
Cdd:PRK05681   1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDG-DPYRRKQVVFAAELDPGQGTGGVKVAKIVEDQSPFKLVYD 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493356446  82 PGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLKA 137
Cdd:PRK05681  80 PGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLTIGQS 135
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
2-136 2.16e-57

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 174.53  E-value: 2.16e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   2 DPLSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGaDPYRRKTVTFGSELDH-VSGVERVKVKKLGVDRGDFVHEY 80
Cdd:COG1558    1 MSLFSAFDIAGSGLTAQRLRLNVIASNLANANSTRTSDG-GPYRRKQVVFEAVLDRaGSGAAGVRVAGIVEDDSPFRLVY 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493356446  81 DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:COG1558   80 DPGHPDADADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSMLLKTLEIGR 135
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 9-136 1.64e-45

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 144.81  E-value: 1.64e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446    9 KIAGSGLEVQSTRLRIVSENIANARSTgDTPGADPYRRKTVTFGSEL--DHVS--GVERVKVKKLGVDRGDFVHEYDPGN 84
Cdd:TIGR01395   5 NVSASALSAQRVRMNVVSSNLANADST-RTPAGDPYRRRRPVFEAELfqDRASrpGGSGVKVAKIVEDDSPFKLVYDPTH 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 493356446   85 PAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:TIGR01395  84 PDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMFLRTLEIGR 135
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 1-136 1.87e-37

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 124.15  E-value: 1.87e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   1 MDPLSAASKIAGSGLEVQSTRLRIVSENIANArstgDTPGadpYRRKTVTFGSELDHVSGVERVKVKKLGVDRGDFVHEY 80
Cdd:PRK12632   1 MTDFSKSLSVSASGMRAQALRLRHVSENIANA----DTPG---YRRKTVSFQEARDFDPGSGLVSTGPVRLDRSELPRIY 73

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 493356446  81 DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:PRK12632  74 DPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR 129
flgC PRK12630
flagellar basal body rod protein FlgC; Provisional
 9-121 2.02e-26

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183635  Cd Length: 143  Bit Score: 96.44  E-value: 2.02e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   9 KIAGSGLEVQSTRLRIVSENIANARSTGDTPGaDPYRRKTVTFGSELDHV---------SGVERVKVKKLGVDRGDFVHE 79
Cdd:PRK12630   8 RISASGLSAERLRMDTIASNIANATTTRTADG-GPYKRKIAVFQENLNKElnkkngayeKKLYGVKAVGIVEDKSPFRKV 86

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 493356446  80 YDPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVI 121
Cdd:PRK12630  87 YDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEANVTAI 128
flgC PRK12631
flagellar basal body rod protein FlgC; Provisional
 10-136 1.59e-22

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183636  Cd Length: 138  Bit Score: 86.17  E-value: 1.59e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446  10 IAGSGLEVQSTRLRIVSENIANARSTGDTPGaDPYRRKTVTFGSELD----HVSGVERVKVKKLGVDRGDFVHEYDPGNP 85
Cdd:PRK12631   9 VAGSGMSAQSVRLNTTASNIANADSVSSSVD-KTYRARHPIFEAEMAkaqsQQQASQGVAVKGIVESDKPLLKEYSPDHP 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 493356446  86 AADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLLK 136
Cdd:PRK12631  88 MADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138
flgC PRK06802
flagellar basal body rod protein FlgC; Reviewed
 9-121 1.00e-17

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 180702  Cd Length: 141  Bit Score: 74.06  E-value: 1.00e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   9 KIAGSGLEVQSTRLRIVSENIANARSTGDTPgADPYRRKTVTFG-----SELDHVSGVERVKVKKLGV-DRGDFVHEYDP 82
Cdd:PRK06802   8 RIAGSAMTAQTIRLNTVASNLANAESPAASA-ATAYKARSPVFAavysaRTLADPRGVQGAQVQVLDVvQVGGSVKRYEP 86

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 493356446  83 GNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVI 121
Cdd:PRK06802  87 NNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVL 125
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 10-134 5.22e-17

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 72.03  E-value: 5.22e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446  10 IAGSGLEVQSTRLRIVSENIANARSTGDTPGAdPYRRKTVTFGSELD-HVSGVERVKVKKLGVDRGDFVHEYDPGNPAAD 88
Cdd:PRK12629   9 VAGSALHAQSVRLSTIASNLANADSVAGSAEA-TYKPIEPIFQAQQSrQDPSLTSVNVKEITTTNAPPIRRYEPGHPLAD 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 493356446  89 TNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDL 134
Cdd:PRK12629  88 ADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTM 133
flgC PRK12628
flagellar basal body rod protein FlgC; Provisional
 4-134 3.94e-13

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 79089  Cd Length: 140  Bit Score: 62.17  E-value: 3.94e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   4 LSAASKIAGSGLEVQSTRLRIVSENIANARSTGDTPGaDPYRRKTVTFGSELDHVSGV--ERVK--VKKLGVDRGDFV-- 77
Cdd:PRK12628   3 LNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPD-EVYQAKYPVFKSVQENANQWmgEQIKagVKLDGIYESDAEph 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493356446  78 HEYDPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDL 134
Cdd:PRK12628  82 RRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQL 138
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
1-122 6.05e-12

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 58.76  E-value: 6.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   1 MDPLSAASKIAGSGLEVQSTRLRIVSENIANArstgDTPGadpYRRKTVTFGSELDHVSGVERVKVK-----------KL 69
Cdd:COG1815    2 SILFDKTFGLLEKALDLRSLRQEVIASNIANA----DTPG---YKARDVDFEAALKAALGGGSAGLAlattnprhipgSA 74

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 493356446  70 GVDRGDFVHEYDPGNPAADTNgmvkmpNVNVLIEMADMREANRSYDANLQVIR 122
Cdd:COG1815   75 GSSVSPEVLYRTPTQPSLDGN------TVDLDEEMAKLAENALQYQAALTFLN 121
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 81-134 1.14e-07

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 46.10  E-value: 1.14e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 493356446   81 DPGNPAADTNGMVKMPNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDL 134
Cdd:pfam06429  21 GAGADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQL 74
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
82-126 1.72e-05

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 42.49  E-value: 1.72e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 493356446  82 PGNPAADTNGMVK-----MPNVNVLIEMADMREANRSYDANLQVIrQTRD 126
Cdd:COG4786  201 VGTPGEDGLGTLRqgyleGSNVDVVEEMVDMIEAQRAYEANSKVI-QTAD 249
FlgB TIGR01396
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ...
 14-133 1.62e-04

flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273598 [Multi-domain]  Cd Length: 131  Bit Score: 38.91  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446   14 GLEVQSTRLRIVSENIANArstgDTPGadpYRRKTVTFGSELDHV--------SGVERVKVKKLGVDRGDF------VHE 79
Cdd:TIGR01396  11 ALDVRSLRQEVIANNIANV----DTPG---YKAKDVSFEAELKKAldnernskLTLARTDTRPRHLNAQDSnsvepsLQY 83

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 493356446   80 YDPGNPAADTNgmvkmpNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTID 133
Cdd:TIGR01396  84 DYTTQVKNDGN------NVDIDQEMAELAQNQMHYQALTQFLNGKIKGLNYVLR 131
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
10-53 1.68e-04

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 40.25  E-value: 1.68e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 493356446  10 IAGSGLEVQSTRLRIVSENIANArstgDTPGadpYRRKTVTFGS 53
Cdd:COG1256    8 IALSGLNAAQRALDVTSHNIANA----NTPG---YSRQRVVLSA 44
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 91-136 1.78e-04

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 39.85  E-value: 1.78e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 493356446  91 GMVKMPNVNVLIEMADMREANRSYDANLQVIrQTRDLVASTIDLLK 136
Cdd:PRK12693 217 GFLETSNVNVVEELVNMITGQRAYEMNSKAI-STADQMLQYVNQLL 261
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 82-136 3.95e-04

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 38.63  E-value: 3.95e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356446  82 PGNPAAD-----TNGMVKMPNVNVLIEMADMREANRSYDANLQVIrQTRDLVASTIDLLK 136
Cdd:PRK12816 205 PGIPGSEgfgrvLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAI-QTSDNMLGTANNLK 263
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 10-53 4.29e-04

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 38.77  E-value: 4.29e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 493356446   10 IAGSGLEVQSTRLRIVSENIANArstgDTPGadpYRRKTVTFGS 53
Cdd:TIGR03506   5 TALSGLNAQSSALDVIANNIANA----NTTG---FKRSRAEFQD 41
flgE PRK05682
flagellar hook protein FlgE; Validated
 7-53 8.25e-04

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 37.89  E-value: 8.25e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 493356446   7 ASKIAGSGLEVQSTRLRIVSENIANARSTGdtpgadpYRRKTVTFGS 53
Cdd:PRK05682   2 SFNTAVSGLNAASNRLDVIGNNIANANTTG-------FKSSRAEFAD 41
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
10-53 1.22e-03

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 37.46  E-value: 1.22e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 493356446  10 IAGSGLEVQSTRLRIVSENIANARSTGdtpgadpYRRKTVTFGS 53
Cdd:COG1749    7 TGVSGLNAASTALDVIGNNIANSNTVG-------FKSSRAEFAD 43
flgK PRK07521
flagellar hook-associated protein FlgK; Validated
 4-66 2.43e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 236038 [Multi-domain]  Cd Length: 483  Bit Score: 36.84  E-value: 2.43e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493356446   4 LSAASKIAGSGLEVQSTRLRIVSENIANARSTGdtpgadpYRRKTVTFGSEldhVSGVERVKV 66
Cdd:PRK07521   3 LSSALNTAQSGLTATSRQTSVVSRNIANAGTPG-------YSRREASLVSG---PAGGQVVGI 55
flgF PRK12689
flagellar basal-body rod protein FlgF;
82-135 2.85e-03

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 36.26  E-value: 2.85e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493356446  82 PGNPAADTNGMVKM-----PNVNVLIEMADMREANRSYDANLQVIRQTRDLVASTIDLL 135
Cdd:PRK12689 190 APARPADTKARVEQgyierSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIERL 248
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 81-115 4.60e-03

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 34.14  E-value: 4.60e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 493356446   81 DPGNPAADTN------GMVKMPNVNVLIEMADMREANRSYD 115
Cdd:TIGR02490  49 TGGGPAPADSnvrvvqGYLEGSNVNAVSEMVDMIEAQRAYE 89
Flg_bb_rod pfam00460
Flagella basal body rod protein;
10-41 6.71e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 32.54  E-value: 6.71e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 493356446   10 IAGSGLEVQSTRLRIVSENIANArstgDTPGA 41
Cdd:pfam00460   3 TAVSALNAQQIRLDVIANNIANA----NTPGY 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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