NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|493356455|ref|WP_006313027|]
View 

MULTISPECIES: flagellar motor switch protein FliN [Agrobacterium]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 10020786)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 98-177 1.13e-28

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


:

Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 101.52  E-value: 1.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455   98 NMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLSTR 177
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVED---KFGIRITEIVDSS 77
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 6-175 2.74e-26

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 98.54  E-value: 2.74e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455   6 TPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAAAPQVA 85
Cdd:COG1886    6 LLLALLLALAALALLLALALALPVLLAALLALLLALLLLAPLLLLAAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  86 GVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtR 165
Cdd:COG1886   86 LEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDD---R 162

                        170
                 ....*....|
gi 493356455 166 FGVKLIEVLS 175
Cdd:COG1886  163 FGVRITEIVS 172
 
Name Accession Description Interval E-value
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 98-177 1.13e-28

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 101.52  E-value: 1.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455   98 NMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLSTR 177
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVED---KFGIRITEIVDSS 77
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 6-175 2.74e-26

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 98.54  E-value: 2.74e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455   6 TPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAAAPQVA 85
Cdd:COG1886    6 LLLALLLALAALALLLALALALPVLLAALLALLLALLLLAPLLLLAAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  86 GVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtR 165
Cdd:COG1886   86 LEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDD---R 162

                        170
                 ....*....|
gi 493356455 166 FGVKLIEVLS 175
Cdd:COG1886  163 FGVRITEIVS 172
PRK08119 PRK08119
flagellar motor switch protein; Validated
 90-175 6.58e-20

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 85.30  E-value: 6.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  90 PLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLeddDTRFGVK 169
Cdd:PRK08119 291 PLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVI---DENFGVR 367


                 ....*.
gi 493356455 170 LIEVLS 175
Cdd:PRK08119 368 ITDIVS 373
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 107-175 4.86e-15

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 66.21  E-value: 4.86e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493356455  107 IDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLS 175
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGG---NLAVRITEIID 66
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
100-178 1.22e-09

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 55.94  E-value: 1.22e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493356455 100 EMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLSTRK 178
Cdd:COG1868  250 EELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNG---RLAVKITEIIEEEE 325
 
Name Accession Description Interval E-value
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 98-177 1.13e-28

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 101.52  E-value: 1.13e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455   98 NMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLSTR 177
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVED---KFGIRITEIVDSS 77
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 6-175 2.74e-26

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 98.54  E-value: 2.74e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455   6 TPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAAAPQVA 85
Cdd:COG1886    6 LLLALLLALAALALLLALALALPVLLAALLALLLALLLLAPLLLLAAAGAALLLGLLDLLLEVGGLLLLGSDEEPAEFEP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  86 GVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtR 165
Cdd:COG1886   86 LEDAPEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDD---R 162

                        170
                 ....*....|
gi 493356455 166 FGVKLIEVLS 175
Cdd:COG1886  163 FGVRITEIVS 172
PRK08119 PRK08119
flagellar motor switch protein; Validated
 90-175 6.58e-20

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 85.30  E-value: 6.58e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  90 PLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLeddDTRFGVK 169
Cdd:PRK08119 291 PLATTEPRNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVI---DENFGVR 367


                 ....*.
gi 493356455 170 LIEVLS 175
Cdd:PRK08119 368 ITDIVS 373
PRK08916 PRK08916
flagellar motor switch protein FliN;
72-179 6.41e-19

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 77.48  E-value: 6.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  72 DFAMDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRI 151
Cdd:PRK08916  12 DLNGADAPPEDDVGYNEEEQADRTAADLEAVFDVPVQVSAVLGRSKMDVGQLLKLGPGSVLELDRKVGEAIDIYVNNRLV 91

                         90       100
                 ....*....|....*....|....*...
gi 493356455 152 ARGEITVLEDddtRFGVKLIEVLSTRKA 179
Cdd:PRK08916  92 ARGEVVLVED---RLGVTMTEIIKAERA 116
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 107-175 4.86e-15

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 66.21  E-value: 4.86e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493356455  107 IDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLS 175
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGG---NLAVRITEIID 66
fliN PRK05698
flagellar motor switch protein FliN;
49-175 1.08e-14

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 67.52  E-value: 1.08e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  49 GDFGSTDEVSTDNDLSAFGGGAAD---FAMDDFAAAPQVAGVKAPLGSglseNMEMIMDIPIDVQIVLGTSRMLVSGLMS 125
Cdd:PRK05698  24 EEAGDAGQDDIDALLGADAGAEPSgprAPMEEFGSSPKPNEPVSLEGP----NLDVILDIPVSISMEVGSTDINIRNLLQ 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 493356455 126 LEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLS 175
Cdd:PRK05698 100 LNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNE---KFGIRLTDVIS 146
fliN PRK08983
flagellar motor switch protein FliN;
58-175 1.20e-13

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 64.39  E-value: 1.20e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  58 STDNDLSAFGGGAADFAMDDFAAAP--QVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALD 135
Cdd:PRK08983   2 SDEDTADDWAAAMAEQALEEALAAEldELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELD 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 493356455 136 RKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLS 175
Cdd:PRK08983  82 RVAGEPLDVMVNGTLIAHGEVVVVND---KFGIRLTDVIS 118
fliN PRK07963
flagellar motor switch protein FliN; Validated
 92-175 4.60e-13

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 62.88  E-value: 4.60e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  92 GSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLI 171
Cdd:PRK07963  47 VSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVAD---KYGVRIT 123


                 ....
gi 493356455 172 EVLS 175
Cdd:PRK07963 124 DIIT 127
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 95-174 2.43e-11

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 61.00  E-value: 2.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  95 LSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDdtrFGVKLIEVL 174
Cdd:PRK06782 452 VYMDTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGF---FGVKVTKSL 528
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 104-173 7.74e-11

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 59.35  E-value: 7.74e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  104 DIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEV 173
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGG---RLGVRILEL 298
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
100-178 1.22e-09

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 55.94  E-value: 1.22e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493356455 100 EMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLSTRK 178
Cdd:COG1868  250 EELEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNG---RLAVKITEIIEEEE 325
PRK08433 PRK08433
flagellar motor switch protein FliN;
94-174 1.36e-09

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 53.21  E-value: 1.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  94 GLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDdtrFGVKLIEV 173
Cdd:PRK08433  21 ELICDYENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKN---LAIRINEI 97


                 .
gi 493356455 174 L 174
Cdd:PRK08433  98 L 98
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 98-177 1.77e-08

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 52.32  E-value: 1.77e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493356455  98 NMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLeddDTRFGVKLIEVLSTR 177
Cdd:PRK08432 199 NINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIV---DGNFGIQITEIGTKK 275
PRK06033 PRK06033
flagellar motor switch protein FliN;
99-161 5.48e-07

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 45.52  E-value: 5.48e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 493356455  99 MEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLED 161
Cdd:PRK06033   1 VSTLDAVSVELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRN 63
fliM PRK06666
flagellar motor switch protein FliM; Validated
 75-149 2.59e-04

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 40.21  E-value: 2.59e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 493356455  75 MDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGR 149
Cdd:PRK06666 228 REKLSSPYWMSDSRDKDKRWRKELEQQVQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGK 302
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
104-172 1.35e-03

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 38.18  E-value: 1.35e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493356455 104 DIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIE 172
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQG---RLGVRVER 301
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
104-175 5.79e-03

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 36.38  E-value: 5.79e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493356455 104 DIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDddtRFGVKLIEVLS 175
Cdd:PRK08158 229 QLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDD---TLGVEIHEWLS 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH