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Conserved domains on  [gi|493434116|ref|WP_006389666|]
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MULTISPECIES: DUF4148 domain-containing protein [Achromobacter]

Protein Classification

DUF4148 domain-containing protein( domain architecture ID 10615266)

DUF4148 domain-containing protein similar to Burkholderia pseudomallei BPSS1996 family virulence factor

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4148 pfam13663
Domain of unknown function (DUF4148);
1-57 1.26e-06

Domain of unknown function (DUF4148);


:

Pssm-ID: 433388  Cd Length: 62  Bit Score: 42.02  E-value: 1.26e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 493434116    1 MKTLVSALILSASFIGAAQAGELDY-PPALDTHSTVTRAQVQQELAAARANGELVSTE 57
Cdd:pfam13663   1 MKSLLTIAAVIAAVAAAAALAAPAMaVAPQHFASPKTRAQVRAELAAAEAAGYLPGGD 58
DUF4148 pfam13663
Domain of unknown function (DUF4148);
44-97 3.29e-04

Domain of unknown function (DUF4148);


:

Pssm-ID: 433388  Cd Length: 62  Bit Score: 35.86  E-value: 3.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 493434116   44 LAAARANGELVSTEEGSAATAFASAGDKSRAQVKQELAAARAQGLTDSGELDYP 97
Cdd:pfam13663   9 AVIAAVAAAAALAAPAMAVAPQHFASPKTRAQVRAELAAAEAAGYLPGGDSNYP 62
 
Name Accession Description Interval E-value
DUF4148 pfam13663
Domain of unknown function (DUF4148);
1-57 1.26e-06

Domain of unknown function (DUF4148);


Pssm-ID: 433388  Cd Length: 62  Bit Score: 42.02  E-value: 1.26e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 493434116    1 MKTLVSALILSASFIGAAQAGELDY-PPALDTHSTVTRAQVQQELAAARANGELVSTE 57
Cdd:pfam13663   1 MKSLLTIAAVIAAVAAAAALAAPAMaVAPQHFASPKTRAQVRAELAAAEAAGYLPGGD 58
DUF4148 pfam13663
Domain of unknown function (DUF4148);
44-97 3.29e-04

Domain of unknown function (DUF4148);


Pssm-ID: 433388  Cd Length: 62  Bit Score: 35.86  E-value: 3.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 493434116   44 LAAARANGELVSTEEGSAATAFASAGDKSRAQVKQELAAARAQGLTDSGELDYP 97
Cdd:pfam13663   9 AVIAAVAAAAALAAPAMAVAPQHFASPKTRAQVRAELAAAEAAGYLPGGDSNYP 62
 
Name Accession Description Interval E-value
DUF4148 pfam13663
Domain of unknown function (DUF4148);
1-57 1.26e-06

Domain of unknown function (DUF4148);


Pssm-ID: 433388  Cd Length: 62  Bit Score: 42.02  E-value: 1.26e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 493434116    1 MKTLVSALILSASFIGAAQAGELDY-PPALDTHSTVTRAQVQQELAAARANGELVSTE 57
Cdd:pfam13663   1 MKSLLTIAAVIAAVAAAAALAAPAMaVAPQHFASPKTRAQVRAELAAAEAAGYLPGGD 58
DUF4148 pfam13663
Domain of unknown function (DUF4148);
44-97 3.29e-04

Domain of unknown function (DUF4148);


Pssm-ID: 433388  Cd Length: 62  Bit Score: 35.86  E-value: 3.29e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 493434116   44 LAAARANGELVSTEEGSAATAFASAGDKSRAQVKQELAAARAQGLTDSGELDYP 97
Cdd:pfam13663   9 AVIAAVAAAAALAAPAMAVAPQHFASPKTRAQVRAELAAAEAAGYLPGGDSNYP 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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