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Conserved domains on  [gi|493453784|ref|WP_006409061|]
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LLM class flavin-dependent oxidoreductase [Burkholderia multivorans]

Protein Classification

LLM class flavin-dependent oxidoreductase( domain architecture ID 10023993)

LLM (luciferase-like monooxygenase) class flavin-dependent oxidoreductase transfers one oxygen atom of an oxygen molecule to a substrate while reducing the other oxygen atom to water

CATH:  3.20.20.30
EC:  1.-.-.-
Gene Ontology:  GO:0010181|GO:0016491
PubMed:  24361254|33460580
SCOP:  3000585

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-425 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


:

Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 585.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784    9 FGLMLQGAGSHMNAWRHPSNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYIND-----KSIPHFLNRFEPLTLLSAL 83
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDvpdaaLRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   84 AAATTKIGLAGTISTSYSEPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKT-HPDHALRYEIADEFLSVVQGLW 162
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDeHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  163 DSWDDDAFVRDRETGRFFDRTKLHTLDHRGRFFQVAGPLNIQRSRQGQPVIFQAGSSDDGIALAGKYADAVFTHSPSLDE 242
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  243 TAAFSRRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAEDKYRAIRDLLTIDDALAYLGRYFDhHDFTQYALDAPFPEL 322
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTG-IDLSQYDLDAPLPDL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  323 GDIGRNsfRSTTDRIKADAKRHGLTLRETALAVATPR--PNFIGTAEHVADELIRWFDAGAADGFILGFPVQAQGVDDFV 400
Cdd:TIGR03860 320 PTEAGQ--KSRFDLILELARRENLTLRQLALRLAGGRghPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFV 397
                         410       420
                  ....*....|....*....|....*
gi 493453784  401 ELVIPALEARGRYRRELPGSTLRDH 425
Cdd:TIGR03860 398 DLVVPELQRRGLFRTEYEGGTLREH 422
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-425 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 585.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784    9 FGLMLQGAGSHMNAWRHPSNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYIND-----KSIPHFLNRFEPLTLLSAL 83
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDvpdaaLRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   84 AAATTKIGLAGTISTSYSEPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKT-HPDHALRYEIADEFLSVVQGLW 162
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDeHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  163 DSWDDDAFVRDRETGRFFDRTKLHTLDHRGRFFQVAGPLNIQRSRQGQPVIFQAGSSDDGIALAGKYADAVFTHSPSLDE 242
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  243 TAAFSRRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAEDKYRAIRDLLTIDDALAYLGRYFDhHDFTQYALDAPFPEL 322
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTG-IDLSQYDLDAPLPDL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  323 GDIGRNsfRSTTDRIKADAKRHGLTLRETALAVATPR--PNFIGTAEHVADELIRWFDAGAADGFILGFPVQAQGVDDFV 400
Cdd:TIGR03860 320 PTEAGQ--KSRFDLILELARRENLTLRQLALRLAGGRghPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFV 397
                         410       420
                  ....*....|....*....|....*
gi 493453784  401 ELVIPALEARGRYRRELPGSTLRDH 425
Cdd:TIGR03860 398 DLVVPELQRRGLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
9-413 1.44e-134

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 391.30  E-value: 1.44e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   9 FGLMLQGAGSHMNAWRHPsNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYINDKSIPHFLNRFEPLTLLSALAAATT 88
Cdd:cd01095    3 LGAFLHGAGHHAAAWRHP-APPDASIDFDHYVRLARTAERAKFDAVFLADGLAIRALSRPHPVARLEPLTLLAALAAVTE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  89 KIGLAGTISTSYSEPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKT-HPDHALRYEIADEFLSVVQGLWDSWDD 167
Cdd:cd01095   82 RIGLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDeHPEHDERYARAEEFVEVVKGLWDSWED 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 168 DAFVRDRETGRFFDRTKLHTLDHRGRFFQVAGPLNIQRSRQGQPVIFQAGSSDDGIALAGKYADAVFTHSPSLDETAAFS 247
Cdd:cd01095  162 DALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQAFY 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 248 RRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAEDKYRAIRDLLtiddalaylgryfdhhdftqyaldapfpelgdIGR 327
Cdd:cd01095  242 ADVKARAAAAGRLDPPPPDLPDLGSRLSASRLLLADLLARGGLHR--------------------------------REV 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 328 NSFRSTTDRIKADAKRHGLTLretalavatprpnfigtAEHVADELIRWFDAGAADGFILGFPVQAQGVDDFVELVIPAL 407
Cdd:cd01095  290 GTAREVADRLERAAGGGTVVG-----------------PEQIADELEEWFEAGAADGFNIMPPYLPGGLDDFVDLVVPEL 352

                 ....*.
gi 493453784 408 EARGRY 413
Cdd:cd01095  353 QRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
46-409 6.33e-60

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 197.85  E-value: 6.33e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  46 AEAAGIAFAFVADGLYINDksiphfLNRFEPLTLLSALAAATTKIGL-AGTISTSYSEPFTVARQLASLDAISGGRAGWN 124
Cdd:COG2141    1 AERLGFDRVWVADHHFPPG------GASPDPWVLLAALAAATSRIRLgTGVVVLPLRHPLVVAEQFATLDHLSGGRLDLG 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 125 VVTTPLEGTAKNFGKthpDHALRYEIADEFLSVVQGLWDSwdddafvrdretgrffdrtklHTLDHRGRFFQVAGPLNIQ 204
Cdd:COG2141   75 VGRGWGPDEFAAFGL---DHDERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEGARLVP 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 205 RSRQGQ-PVIFQAGSSDDGIALAGKYADAVFTHSPSLDETAAFSRRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAED 283
Cdd:COG2141  131 RPVQGPhPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETDEEARE 210
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 284 KYRAIRdlltidDALAYLGRYFDHHDFTQyaldapfpelgdigrnsfrsttdrikadakrhGLTLRETALAVAtpRPNFI 363
Cdd:COG2141  211 RARPYL------RALLALPRGRPPEEAEE--------------------------------GLTVREDLLELL--GAALV 250
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 493453784 364 GTAEHVADELIRWFDAGAADGFILGFP-----VQAQGVDDFVELVIPALEA 409
Cdd:COG2141  251 GTPEQVAERLEELAEAAGVDEFLLQFPgldpeDRLRSLELFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
23-381 1.26e-38

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 142.12  E-value: 1.26e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   23 WRHPSNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYINDKsiphflnrFEPLTLLSALAAATTKIGLAGTISTSYS- 101
Cdd:pfam00296   9 TRNGGGLGAGSESLRYLVELARAAEELGFDGVWLAEHHGGPGG--------PDPFVVLAALAAATSRIRLGTAVVPLPTr 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  102 EPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKTHPDhalRYEIADEFLSVVQGLWDSwdddafvrdretgrffd 181
Cdd:pfam00296  81 HPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFGVDHDE---RYARLREFLEVLRRLWRG----------------- 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  182 rtklHTLDHRGRFFQVAGPLNIQRSRQGQPVIFqAGSSDDGIALAGKYADAVFTHSPS-LDETAAFSRRVKQSAIDHGRR 260
Cdd:pfam00296 141 ----EPVDFEGEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFApPAAAAELIERVRAGAAEAGRD 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  261 PDDVKIFPGIGPIVGRTAAEAEDKYRAIrdlltiddaLAYLGRYFDHHDFTQYALDAPFPELgDIGRNSFRSTTDRIKAD 340
Cdd:pfam00296 216 PADIRVGASLTVIVADTEEEARAEARAL---------IAGLPFYRMDSEGAGRLAEAREIGE-EYDAGDWAGAADAVPDE 285
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 493453784  341 AkrhgltLRETALavatprpnfIGTAEHVADELIRWFDAGA 381
Cdd:pfam00296 286 L------VRAFAL---------VGTPEQVAERLAAYAEAGV 311
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
103-304 2.23e-09

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 58.81  E-value: 2.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 103 PFTVARQLASLDAISGGRAGWNVVT----TPLEGTAknfgkTHPDHALRYEIADEFLSVvqglWdswdddafvRDRETGR 178
Cdd:PRK00719  83 PTVAARMAATLDRLSNGRLLINLVTggdpAELAGDG-----LFLDHDERYEASAEFLRI----W---------RRLLEGE 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 179 ffdrtklhTLDHRGRFFQVAG------PlnIQRSRqgqPVIFQAGSSDDGIALAGKYADAVFTHSPSLDETAAFSRRVKQ 252
Cdd:PRK00719 145 --------TVDFEGKHIQVKGakllfpP--VQQPY---PPLYFGGSSDAAQELAAEQVDLYLTWGEPPAQVKEKIEQVRA 211
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493453784 253 SAIDHGRrpddvKIFPGI--GPIVGRTAAEA-EDKYRAIRDL--LTIDDALAYLGRY 304
Cdd:PRK00719 212 KAAAHGR-----KVRFGIrlHVIVRETNEEAwQAAERLISHLddETIARAQAAFARM 263
 
Name Accession Description Interval E-value
FMN_nitrolo TIGR03860
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a ...
9-425 0e+00

FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity]


Pssm-ID: 274819 [Multi-domain]  Cd Length: 422  Bit Score: 585.24  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784    9 FGLMLQGAGSHMNAWRHPSNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYIND-----KSIPHFLNRFEPLTLLSAL 83
Cdd:TIGR03860   1 LGAFLNGVGHHPGLWRHPRARADAYLDLDYWTELARTAERGKFDALFFADVLGVYDvpdaaLRRAAQLPRFEPLTLLSAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   84 AAATTKIGLAGTISTSYSEPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKT-HPDHALRYEIADEFLSVVQGLW 162
Cdd:TIGR03860  81 AAVTEHIGLGATASTTYEEPYNLARRFASLDHLSGGRAGWNIVTSYLDSAARNFGLDeHPPHDERYERAEEFVDVVYKLW 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  163 DSWDDDAFVRDRETGRFFDRTKLHTLDHRGRFFQVAGPLNIQRSRQGQPVIFQAGSSDDGIALAGKYADAVFTHSPSLDE 242
Cdd:TIGR03860 161 DSWEDDAFVRDKASGVFADPAKVHPINHKGKHFSVRGPLNIPRSPQGTPVLFQAGSSERGREFAARHAEAVFTAQPTLED 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  243 TAAFSRRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAEDKYRAIRDLLTIDDALAYLGRYFDhHDFTQYALDAPFPEL 322
Cdd:TIGR03860 241 AQAFYADIKARAAAAGRDPDDVKILPGITPIVGRTEAEARAKYAELQDLISPEGGLALLSGWTG-IDLSQYDLDAPLPDL 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  323 GDIGRNsfRSTTDRIKADAKRHGLTLRETALAVATPR--PNFIGTAEHVADELIRWFDAGAADGFILGFPVQAQGVDDFV 400
Cdd:TIGR03860 320 PTEAGQ--KSRFDLILELARRENLTLRQLALRLAGGRghPVFVGTPEQVADQLEEWFEEGAADGFNLMPPVLPGGLEDFV 397
                         410       420
                  ....*....|....*....|....*
gi 493453784  401 ELVIPALEARGRYRRELPGSTLRDH 425
Cdd:TIGR03860 398 DLVVPELQRRGLFRTEYEGGTLREH 422
Nitrilotriacetate_monoxgenase cd01095
nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin ...
9-413 1.44e-134

nitrilotriacetate monoxygenase oxidizes nitrilotriacetate utilizing reduced flavin mononucleotide (FMNH2) and oxygen. The FMNH2 is provided by an NADH:flavin mononucleotide (FMN) oxidorductase that uses NADH to reduce FMN to FMNH2.


Pssm-ID: 238528 [Multi-domain]  Cd Length: 358  Bit Score: 391.30  E-value: 1.44e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   9 FGLMLQGAGSHMNAWRHPsNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYINDKSIPHFLNRFEPLTLLSALAAATT 88
Cdd:cd01095    3 LGAFLHGAGHHAAAWRHP-APPDASIDFDHYVRLARTAERAKFDAVFLADGLAIRALSRPHPVARLEPLTLLAALAAVTE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  89 KIGLAGTISTSYSEPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKT-HPDHALRYEIADEFLSVVQGLWDSWDD 167
Cdd:cd01095   82 RIGLVATASTTYNEPYHLARRFASLDHISGGRAGWNVVTSANPGEARNFGRDeHPEHDERYARAEEFVEVVKGLWDSWED 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 168 DAFVRDRETGRFFDRTKLHTLDHRGRFFQVAGPLNIQRSRQGQPVIFQAGSSDDGIALAGKYADAVFTHSPSLDETAAFS 247
Cdd:cd01095  162 DALVRDKASGRFADPAKVHPLDHVGDHFGVRGPLNGPRSPQGRPVIVQAGSSEAGREFAARHAEAVFTAQQTLEEAQAFY 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 248 RRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAEDKYRAIRDLLtiddalaylgryfdhhdftqyaldapfpelgdIGR 327
Cdd:cd01095  242 ADVKARAAAAGRLDPPPPDLPDLGSRLSASRLLLADLLARGGLHR--------------------------------REV 289
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 328 NSFRSTTDRIKADAKRHGLTLretalavatprpnfigtAEHVADELIRWFDAGAADGFILGFPVQAQGVDDFVELVIPAL 407
Cdd:cd01095  290 GTAREVADRLERAAGGGTVVG-----------------PEQIADELEEWFEAGAADGFNIMPPYLPGGLDDFVDLVVPEL 352

                 ....*.
gi 493453784 408 EARGRY 413
Cdd:cd01095  353 QRRGLF 358
SsuD COG2141
Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ...
46-409 6.33e-60

Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) [Coenzyme transport and metabolism, General function prediction only]; Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) is part of the Pathway/BioSystem: Pyrimidine degradation


Pssm-ID: 441744 [Multi-domain]  Cd Length: 301  Bit Score: 197.85  E-value: 6.33e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  46 AEAAGIAFAFVADGLYINDksiphfLNRFEPLTLLSALAAATTKIGL-AGTISTSYSEPFTVARQLASLDAISGGRAGWN 124
Cdd:COG2141    1 AERLGFDRVWVADHHFPPG------GASPDPWVLLAALAAATSRIRLgTGVVVLPLRHPLVVAEQFATLDHLSGGRLDLG 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 125 VVTTPLEGTAKNFGKthpDHALRYEIADEFLSVVQGLWDSwdddafvrdretgrffdrtklHTLDHRGRFFQVAGPLNIQ 204
Cdd:COG2141   75 VGRGWGPDEFAAFGL---DHDERYERFEEALEVLRRLWTG---------------------EPVTFEGEFFTVEGARLVP 130
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 205 RSRQGQ-PVIFQAGSSDDGIALAGKYADAVFTHSPSLDETAAFSRRVKQSAIDHGRRPDDVKIFPGIGPIVGRTAAEAED 283
Cdd:COG2141  131 RPVQGPhPPIWIAGSSPAGARLAARLGDGVFTAGGTPEELAEAIAAYREAAAAAGRDPDDLRVSVGLHVIVAETDEEARE 210
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 284 KYRAIRdlltidDALAYLGRYFDHHDFTQyaldapfpelgdigrnsfrsttdrikadakrhGLTLRETALAVAtpRPNFI 363
Cdd:COG2141  211 RARPYL------RALLALPRGRPPEEAEE--------------------------------GLTVREDLLELL--GAALV 250
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 493453784 364 GTAEHVADELIRWFDAGAADGFILGFP-----VQAQGVDDFVELVIPALEA 409
Cdd:COG2141  251 GTPEQVAERLEELAEAAGVDEFLLQFPgldpeDRLRSLELFAEEVLPLLRR 301
Bac_luciferase pfam00296
Luciferase-like monooxygenase;
23-381 1.26e-38

Luciferase-like monooxygenase;


Pssm-ID: 425589 [Multi-domain]  Cd Length: 313  Bit Score: 142.12  E-value: 1.26e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   23 WRHPSNPPDASINVDFAIGIARKAEAAGIAFAFVADGLYINDKsiphflnrFEPLTLLSALAAATTKIGLAGTISTSYS- 101
Cdd:pfam00296   9 TRNGGGLGAGSESLRYLVELARAAEELGFDGVWLAEHHGGPGG--------PDPFVVLAALAAATSRIRLGTAVVPLPTr 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  102 EPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGKTHPDhalRYEIADEFLSVVQGLWDSwdddafvrdretgrffd 181
Cdd:pfam00296  81 HPAVLAEQAATLDHLSGGRFDLGLGTGGPAVEFRRFGVDHDE---RYARLREFLEVLRRLWRG----------------- 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  182 rtklHTLDHRGRFFQVAGPLNIQRSRQGQPVIFqAGSSDDGIALAGKYADAVFTHSPS-LDETAAFSRRVKQSAIDHGRR 260
Cdd:pfam00296 141 ----EPVDFEGEFFTLDGAFLLPRPVQGIPVWV-AASSPAMLELAARHADGLLLWGFApPAAAAELIERVRAGAAEAGRD 215
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  261 PDDVKIFPGIGPIVGRTAAEAEDKYRAIrdlltiddaLAYLGRYFDHHDFTQYALDAPFPELgDIGRNSFRSTTDRIKAD 340
Cdd:pfam00296 216 PADIRVGASLTVIVADTEEEARAEARAL---------IAGLPFYRMDSEGAGRLAEAREIGE-EYDAGDWAGAADAVPDE 285
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 493453784  341 AkrhgltLRETALavatprpnfIGTAEHVADELIRWFDAGA 381
Cdd:pfam00296 286 L------VRAFAL---------VGTPEQVAERLAAYAEAGV 311
Alkanesulfonate_monoxygenase cd01094
Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the ...
7-287 1.41e-32

Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).


Pssm-ID: 238527 [Multi-domain]  Cd Length: 244  Bit Score: 123.54  E-value: 1.41e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784   7 IPFGLMLQGAGshmNAWRHPSNPPDASINVDFAIGIARKAEAAGIAFAFvadglyindksIPHFLNRFEPLTLLSALAAA 86
Cdd:cd01094    1 LEFGWFIPNVS---GGWSLSTPPRGRPWDFEYNRQIAQAAEELGFDGAL-----------SPTGSSGPDGWTVAAALAAA 66
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784  87 TTKIGLAGTISTSYSEPFTVARQLASLDAISGGRAGWNVVTTPLEGTAKNFGkTHPDHALRYEIADEFLSVVQGLWdswd 166
Cdd:cd01094   67 TERLKFLVAIRPGLIAPTVAARQAATLDHISGGRLGLNVVTGGDPAELRMDG-DFLDHDERYARADEFLEVLRRLW---- 141
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 167 ddafvrdretgrffdrTKLHTLDHRGRFFQV----AGPLNIQRSRqgqPVIFQAGSSDDGIALAGKYADAVFTHSPSLDE 242
Cdd:cd01094  142 ----------------TSDEPFDFEGKFYRFknafLRPKPPQQPH---PPIYFGGSSEAAIEFAARHADVYFTWGEPPAQ 202
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 493453784 243 TAAFSRRVKQSAIDHGRRPdDVKIFPGIgpIVGRTAAEAEDKYRA 287
Cdd:cd01094  203 VAEAIARVRAAAAAAGRDV-RFGIRLHV--IVRDTEEEAWAYADR 244
PRK00719 PRK00719
alkanesulfonate monooxygenase; Provisional
103-304 2.23e-09

alkanesulfonate monooxygenase; Provisional


Pssm-ID: 234821 [Multi-domain]  Cd Length: 378  Bit Score: 58.81  E-value: 2.23e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 103 PFTVARQLASLDAISGGRAGWNVVT----TPLEGTAknfgkTHPDHALRYEIADEFLSVvqglWdswdddafvRDRETGR 178
Cdd:PRK00719  83 PTVAARMAATLDRLSNGRLLINLVTggdpAELAGDG-----LFLDHDERYEASAEFLRI----W---------RRLLEGE 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493453784 179 ffdrtklhTLDHRGRFFQVAG------PlnIQRSRqgqPVIFQAGSSDDGIALAGKYADAVFTHSPSLDETAAFSRRVKQ 252
Cdd:PRK00719 145 --------TVDFEGKHIQVKGakllfpP--VQQPY---PPLYFGGSSDAAQELAAEQVDLYLTWGEPPAQVKEKIEQVRA 211
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 493453784 253 SAIDHGRrpddvKIFPGI--GPIVGRTAAEA-EDKYRAIRDL--LTIDDALAYLGRY 304
Cdd:PRK00719 212 KAAAHGR-----KVRFGIrlHVIVRETNEEAwQAAERLISHLddETIARAQAAFARM 263
Flavin_utilizing_monoxygenases cd00347
Flavin-utilizing monoxygenases
213-259 2.20e-03

Flavin-utilizing monoxygenases


Pssm-ID: 238209 [Multi-domain]  Cd Length: 90  Bit Score: 37.34  E-value: 2.20e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 493453784 213 IFQAGSSDDGIALAGKYADAVFTHS-PSLDETAAFSRRVKQSAIDHGR 259
Cdd:cd00347   43 IWFGGSSPPVAEQAGESGDGLLFAArEPPEEVAEALARYREAAAAAGR 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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