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Conserved domains on  [gi|493536952|ref|WP_006490888|]
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MULTISPECIES: hypothetical protein [Burkholderia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TetR_C_13 super family cl25201
Tetracyclin repressor-like, C-terminal domain; This domain is found in TetR-type regulators ...
 21-55 7.81e-03

Tetracyclin repressor-like, C-terminal domain; This domain is found in TetR-type regulators such as AcuR, acrylate-responsive repressor of acuR-acuI-dddL operons involved in acrylate catabolism.


The actual alignment was detected with superfamily member pfam16925:

Pssm-ID: 435659  Cd Length: 113  Bit Score: 32.27  E-value: 7.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 493536952   21 GWEATFGNALLGAFSCPEVAADHisrgDCEQLSEL 55
Cdd:pfam16925  52 DWQARVAACLREAQAAGEIAPDA----DCERLAEF 82
 
Name Accession Description Interval E-value
TetR_C_13 pfam16925
Tetracyclin repressor-like, C-terminal domain; This domain is found in TetR-type regulators ...
 21-55 7.81e-03

Tetracyclin repressor-like, C-terminal domain; This domain is found in TetR-type regulators such as AcuR, acrylate-responsive repressor of acuR-acuI-dddL operons involved in acrylate catabolism.


Pssm-ID: 435659  Cd Length: 113  Bit Score: 32.27  E-value: 7.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 493536952   21 GWEATFGNALLGAFSCPEVAADHisrgDCEQLSEL 55
Cdd:pfam16925  52 DWQARVAACLREAQAAGEIAPDA----DCERLAEF 82
 
Name Accession Description Interval E-value
TetR_C_13 pfam16925
Tetracyclin repressor-like, C-terminal domain; This domain is found in TetR-type regulators ...
 21-55 7.81e-03

Tetracyclin repressor-like, C-terminal domain; This domain is found in TetR-type regulators such as AcuR, acrylate-responsive repressor of acuR-acuI-dddL operons involved in acrylate catabolism.


Pssm-ID: 435659  Cd Length: 113  Bit Score: 32.27  E-value: 7.81e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 493536952   21 GWEATFGNALLGAFSCPEVAADHisrgDCEQLSEL 55
Cdd:pfam16925  52 DWQARVAACLREAQAAGEIAPDA----DCERLAEF 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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