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Conserved domains on  [gi|493636313|ref|WP_006588113|]
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acyl-[acyl-carrier-protein] thioesterase [Lactobacillus jensenii]

Protein Classification

acyl-[acyl-carrier-protein] thioesterase( domain architecture ID 11467542)

acyl-[acyl-carrier-protein] thioesterase plays an essential role in chain termination during de novo fatty acid synthesis by hydrolyzing an acyl group on a fatty acid

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FatA COG3884
Acyl-ACP thioesterase [Lipid transport and metabolism];
3-239 4.63e-74

Acyl-ACP thioesterase [Lipid transport and metabolism];


:

Pssm-ID: 443092 [Multi-domain]  Cd Length: 242  Bit Score: 224.83  E-value: 4.63e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   3 YQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGY 82
Cdd:COG3884    1 YEKEYRVRYYEVDFNGRLRLPALLNYLQDAATEHAEALGFGIDDLEEKGLAWVLSRYQIEIDRYPRWGEKITVETWPSGY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  83 NRFFEYRDFALI-ADNEEIIKVQSQWVILDLEKRRIVPADSEMMARFGSPLLKKNP-QMRRLKKQEYYQQTRQYRVRYDD 160
Cdd:COG3884   81 NRFFAYRDFRILdEDGELLARATSIWVLIDLETRRPVRIPDEILEPYGLEEERALPrPPRKLKKPEDDEEEKEFTVRYSD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 161 LDLNHHMTNSHYFSWMEDMLERKFLNTHEPEMVDIKFDKEVLYGQEVTS-SLIINEQTSYHLISQGD--QVATIAEITWK 237
Cdd:COG3884  161 IDTNGHVNNARYLEWALDALPLEFLKNHRLKRLEINYLKEVRLGDTVEVrSARDEDGRTLHRIVGDDdgKELARARIEWR 240

                 ..
gi 493636313 238 KR 239
Cdd:COG3884  241 KL 242
 
Name Accession Description Interval E-value
FatA COG3884
Acyl-ACP thioesterase [Lipid transport and metabolism];
3-239 4.63e-74

Acyl-ACP thioesterase [Lipid transport and metabolism];


Pssm-ID: 443092 [Multi-domain]  Cd Length: 242  Bit Score: 224.83  E-value: 4.63e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   3 YQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGY 82
Cdd:COG3884    1 YEKEYRVRYYEVDFNGRLRLPALLNYLQDAATEHAEALGFGIDDLEEKGLAWVLSRYQIEIDRYPRWGEKITVETWPSGY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  83 NRFFEYRDFALI-ADNEEIIKVQSQWVILDLEKRRIVPADSEMMARFGSPLLKKNP-QMRRLKKQEYYQQTRQYRVRYDD 160
Cdd:COG3884   81 NRFFAYRDFRILdEDGELLARATSIWVLIDLETRRPVRIPDEILEPYGLEEERALPrPPRKLKKPEDDEEEKEFTVRYSD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 161 LDLNHHMTNSHYFSWMEDMLERKFLNTHEPEMVDIKFDKEVLYGQEVTS-SLIINEQTSYHLISQGD--QVATIAEITWK 237
Cdd:COG3884  161 IDTNGHVNNARYLEWALDALPLEFLKNHRLKRLEINYLKEVRLGDTVEVrSARDEDGRTLHRIVGDDdgKELARARIEWR 240

                 ..
gi 493636313 238 KR 239
Cdd:COG3884  241 KL 242
Acyl-ACP_TE pfam01643
Acyl-ACP thioesterase; This family consists of various acyl-acyl carrier protein (ACP) ...
2-238 8.44e-48

Acyl-ACP thioesterase; This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.


Pssm-ID: 366738 [Multi-domain]  Cd Length: 248  Bit Score: 158.28  E-value: 8.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313    2 KYQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLEN-SQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPV 80
Cdd:pfam01643   3 VFKRKYDVRFYESDFNGTAKLPALMNLLQDIAADQSEElGLSDDGFFKDYNLVWVVYRYEIDIERLPEFGDMIEIETWAS 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   81 GYNRFFEYRDFALI-ADNEEIIKVQSQWVILDLEKRRIVPADSEMMARFGSpllKKNPQMRRLKKQEYYQQTRQ-----Y 154
Cdd:pfam01643  83 SYNKFFCYRRFRVYdEKGEKIIEAKSTWVLMDRETRRPHRVPDEIRAPYQS---ESIEKLIRGPKTKPGKPIEEstekeY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  155 RVRYDDLDLNHHMTNSHYFSWMEDMLERKFLNTHEPEMVDIKFDKEVLYGQEVTS-SLIINEQTSY---HLI-SQGDQVA 229
Cdd:pfam01643 160 HVRYSDIDMNQHVNNVKYLEWILEVLPLDFLDTHEPKKITLKYEKEVQYGDDIEIiTESAGSEEGLktlHEIrNSTGEEI 239

                  ....*....
gi 493636313  230 TIAEITWKK 238
Cdd:pfam01643 240 AQARTDWRK 248
4HBT cd00586
4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate ...
3-111 2.02e-13

4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).


Pssm-ID: 238329 [Multi-domain]  Cd Length: 110  Bit Score: 64.55  E-value: 2.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   3 YQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGY 82
Cdd:cd00586    1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRL 80
                         90       100       110
                 ....*....|....*....|....*....|
gi 493636313  83 NRFFEYRDFALI-ADNEEIIKVQSQWVILD 111
Cdd:cd00586   81 GRKSFTFEQEIFrEDGELLATAETVLVCVD 110
PLN02370 PLN02370
acyl-ACP thioesterase
31-200 4.53e-09

acyl-ACP thioesterase


Pssm-ID: 215210 [Multi-domain]  Cd Length: 419  Bit Score: 55.78  E-value: 4.53e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  31 HVSNRQLENSQAGSK-EMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGYNRFFEYRDFaLIAD---NEEIIKVQSQ 106
Cdd:PLN02370 173 HVKTAGLLGDGFGSTpEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDW-LVRDcktGETLTRASSV 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 107 WVILDLEKRRIVPADSEMMARFGSPLLKKNPQM----RRLKKQEyyQQTRQY-----RVRYDDLDLNHHMTNSHYFSWME 177
Cdd:PLN02370 252 WVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVnedsRKLPKLD--DKTADYirkglTPRWSDLDVNQHVNNVKYIGWIL 329
                        170       180
                 ....*....|....*....|...
gi 493636313 178 DMLERKFLNTHEPEMVDIKFDKE 200
Cdd:PLN02370 330 ESAPPPIMESHELAAITLEYRRE 352
 
Name Accession Description Interval E-value
FatA COG3884
Acyl-ACP thioesterase [Lipid transport and metabolism];
3-239 4.63e-74

Acyl-ACP thioesterase [Lipid transport and metabolism];


Pssm-ID: 443092 [Multi-domain]  Cd Length: 242  Bit Score: 224.83  E-value: 4.63e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   3 YQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGY 82
Cdd:COG3884    1 YEKEYRVRYYEVDFNGRLRLPALLNYLQDAATEHAEALGFGIDDLEEKGLAWVLSRYQIEIDRYPRWGEKITVETWPSGY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  83 NRFFEYRDFALI-ADNEEIIKVQSQWVILDLEKRRIVPADSEMMARFGSPLLKKNP-QMRRLKKQEYYQQTRQYRVRYDD 160
Cdd:COG3884   81 NRFFAYRDFRILdEDGELLARATSIWVLIDLETRRPVRIPDEILEPYGLEEERALPrPPRKLKKPEDDEEEKEFTVRYSD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 161 LDLNHHMTNSHYFSWMEDMLERKFLNTHEPEMVDIKFDKEVLYGQEVTS-SLIINEQTSYHLISQGD--QVATIAEITWK 237
Cdd:COG3884  161 IDTNGHVNNARYLEWALDALPLEFLKNHRLKRLEINYLKEVRLGDTVEVrSARDEDGRTLHRIVGDDdgKELARARIEWR 240

                 ..
gi 493636313 238 KR 239
Cdd:COG3884  241 KL 242
Acyl-ACP_TE pfam01643
Acyl-ACP thioesterase; This family consists of various acyl-acyl carrier protein (ACP) ...
2-238 8.44e-48

Acyl-ACP thioesterase; This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.


Pssm-ID: 366738 [Multi-domain]  Cd Length: 248  Bit Score: 158.28  E-value: 8.44e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313    2 KYQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLEN-SQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPV 80
Cdd:pfam01643   3 VFKRKYDVRFYESDFNGTAKLPALMNLLQDIAADQSEElGLSDDGFFKDYNLVWVVYRYEIDIERLPEFGDMIEIETWAS 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   81 GYNRFFEYRDFALI-ADNEEIIKVQSQWVILDLEKRRIVPADSEMMARFGSpllKKNPQMRRLKKQEYYQQTRQ-----Y 154
Cdd:pfam01643  83 SYNKFFCYRRFRVYdEKGEKIIEAKSTWVLMDRETRRPHRVPDEIRAPYQS---ESIEKLIRGPKTKPGKPIEEstekeY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  155 RVRYDDLDLNHHMTNSHYFSWMEDMLERKFLNTHEPEMVDIKFDKEVLYGQEVTS-SLIINEQTSY---HLI-SQGDQVA 229
Cdd:pfam01643 160 HVRYSDIDMNQHVNNVKYLEWILEVLPLDFLDTHEPKKITLKYEKEVQYGDDIEIiTESAGSEEGLktlHEIrNSTGEEI 239

                  ....*....
gi 493636313  230 TIAEITWKK 238
Cdd:pfam01643 240 AQARTDWRK 248
4HBT cd00586
4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate ...
3-111 2.02e-13

4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).


Pssm-ID: 238329 [Multi-domain]  Cd Length: 110  Bit Score: 64.55  E-value: 2.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   3 YQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGY 82
Cdd:cd00586    1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRL 80
                         90       100       110
                 ....*....|....*....|....*....|
gi 493636313  83 NRFFEYRDFALI-ADNEEIIKVQSQWVILD 111
Cdd:cd00586   81 GRKSFTFEQEIFrEDGELLATAETVLVCVD 110
4HBT cd00586
4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate ...
151-236 1.95e-09

4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).


Pssm-ID: 238329 [Multi-domain]  Cd Length: 110  Bit Score: 53.76  E-value: 1.95e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 151 TRQYRVRYDDLDLNHHMTNSHYFSWME----DMLERKFLNTHEPE-----MV----DIKFDKEVLYGQEVT--------- 208
Cdd:cd00586    2 TLEIRVRFGDTDAAGHVNNARYLRYFEeareEFLRELGLGYDELEeqglgLVvvelEIDYLRPLRLGDRLTvetrvlrlg 81
                         90       100
                 ....*....|....*....|....*....
gi 493636313 209 -SSLIINeqtsYHLISQGDQVATIAEITW 236
Cdd:cd00586   82 rKSFTFE----QEIFREDGELLATAETVL 106
PLN02370 PLN02370
acyl-ACP thioesterase
31-200 4.53e-09

acyl-ACP thioesterase


Pssm-ID: 215210 [Multi-domain]  Cd Length: 419  Bit Score: 55.78  E-value: 4.53e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313  31 HVSNRQLENSQAGSK-EMAMKNQGWVVTQYHMEFKRLPVVAEHVQVVTNPVGYNRFFEYRDFaLIAD---NEEIIKVQSQ 106
Cdd:PLN02370 173 HVKTAGLLGDGFGSTpEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDW-LVRDcktGETLTRASSV 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 107 WVILDLEKRRIVPADSEMMARFGSPLLKKNPQM----RRLKKQEyyQQTRQY-----RVRYDDLDLNHHMTNSHYFSWME 177
Cdd:PLN02370 252 WVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVnedsRKLPKLD--DKTADYirkglTPRWSDLDVNQHVNNVKYIGWIL 329
                        170       180
                 ....*....|....*....|...
gi 493636313 178 DMLERKFLNTHEPEMVDIKFDKE 200
Cdd:PLN02370 330 ESAPPPIMESHELAAITLEYRRE 352
FadM COG0824
Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is ...
151-236 2.57e-07

Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440586 [Multi-domain]  Cd Length: 139  Bit Score: 48.36  E-value: 2.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 151 TRQYRVRYDDLDLNHHMTNSHYFSWME----DMLERKFLNTHEPE-------MVD--IKFDKEVLYGQEVT--------- 208
Cdd:COG0824    7 ETPIRVRFGDTDAMGHVNNANYLRYFEeartEFLRALGLSYAELEeegiglvVVEaeIDYLRPARYGDELTvetrvvrlg 86
                         90       100       110
                 ....*....|....*....|....*....|
gi 493636313 209 -SSLIIneqtSYHLISQGD-QVATIAEITW 236
Cdd:COG0824   87 gSSLTF----EYEIFRADDgELLATGETVL 112
FadM COG0824
Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is ...
1-130 9.91e-07

Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440586 [Multi-domain]  Cd Length: 139  Bit Score: 46.81  E-value: 9.91e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   1 MKYQEDYQIQYADCDETGHVKLQALIDIFMHVSNRQLENSQAGSKEMAMKNQGWVVTQYHMEFKRlPVVA-EHVQVVTNP 79
Cdd:COG0824    4 FTFETPIRVRFGDTDAMGHVNNANYLRYFEEARTEFLRALGLSYAELEEEGIGLVVVEAEIDYLR-PARYgDELTVETRV 82
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493636313  80 VGYNR---FFEYRdFALIADNEEIIKVQSQWVILDLEKRRIVPADSEMMARFGS 130
Cdd:COG0824   83 VRLGGsslTFEYE-IFRADDGELLATGETVLVFVDLETGRPVPLPDELRAALEA 135
hot_dog cd03440
The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl ...
154-236 9.36e-05

The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.


Pssm-ID: 239524 [Multi-domain]  Cd Length: 100  Bit Score: 40.54  E-value: 9.36e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313 154 YRVRYDDLDLNHHMTNSHYFSWMEDMLERKFLNTHEPEM------VDIKFDKEVLYGQEVTSSLIINE------QTSYHL 221
Cdd:cd03440    5 LTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLgavtlsLDVRFLRPVRPGDTLTVEAEVVRvgrssvTVEVEV 84
                         90
                 ....*....|....*
gi 493636313 222 ISQGDQVATIAEITW 236
Cdd:cd03440   85 RNEDGKLVATATATF 99
4HBT_2 pfam13279
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
13-128 5.32e-03

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


Pssm-ID: 463826  Cd Length: 121  Bit Score: 35.78  E-value: 5.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493636313   13 DCDETGHVKLQALIDIFMHVSNRQLEnsQAGSKEMAMKNQGW--VVTQYHMEFKRLPVVAEHVQVVTNPVGYNRF---FE 87
Cdd:pfam13279   5 DIDANGHMNNARYLRYFEEARDRFLE--RLGLDLAYREALGIglILAEAHVRYRRELKLGDELTVETRLIDWDAKrfhLE 82
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 493636313   88 YR----DFALIADNEEIIkvqsqwVILDLEKRRIVPADSEMMARF 128
Cdd:pfam13279  83 HRflspDGKLVATAETRL------VFVDYETRKPAPIPEELLEAL 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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