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Conserved domains on  [gi|493691198|ref|WP_006641213|]
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MULTISPECIES: sulfate ABC transporter permease subunit CysW [Brucella]

Protein Classification

sulfate ABC transporter permease( domain architecture ID 10790587)

sulfate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter that is involved in the transport of sulfate

Gene Ontology:  GO:0015419|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-257 3.29e-156

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443356  Cd Length: 281  Bit Score: 435.31  E-value: 3.29e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRL 81
Cdd:COG4208   21 LIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAWAITRFEFRGKRL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  82 LITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAAL 161
Cdd:COG4208  101 LITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLMQEQGTDEEEAAL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 162 TLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALI 241
Cdd:COG4208  181 TLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNFVAAFAVASLLALL 260

                        250
                 ....*....|....*.
gi 493691198 242 ALVTLVLKVFLERKQH 257
Cdd:COG4208  261 ALVTLVLKTLLEWRTA 276
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-257 3.29e-156

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 435.31  E-value: 3.29e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRL 81
Cdd:COG4208   21 LIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAWAITRFEFRGKRL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  82 LITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAAL 161
Cdd:COG4208  101 LITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLMQEQGTDEEEAAL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 162 TLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALI 241
Cdd:COG4208  181 TLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNFVAAFAVASLLALL 260

                        250
                 ....*....|....*.
gi 493691198 242 ALVTLVLKVFLERKQH 257
Cdd:COG4208  261 ALVTLVLKTLLEWRTA 276
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 1-258 1.00e-139

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 392.91  E-value: 1.00e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198    1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:TIGR02140   4 LLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAA 160
Cdd:TIGR02140  84 LLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  161 LTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLAL 240
Cdd:TIGR02140 164 LTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLAL 243

                         250
                  ....*....|....*...
gi 493691198  241 IALVTLVLKVFLERKQHS 258
Cdd:TIGR02140 244 LALVTLVLKAILERRQGR 261
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
1-255 5.31e-108

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 313.23  E-value: 5.31e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:PRK11602  21 FLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQ 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAA 160
Cdd:PRK11602 101 LLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 161 LTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLAL 240
Cdd:PRK11602 181 ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTL 260

                        250
                 ....*....|....*
gi 493691198 241 IALVTLVLKVFLERK 255
Cdd:PRK11602 261 MAIITLFLKSMLQWR 275
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 47-243 2.88e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.32  E-value: 2.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  47 WLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahdIKIMFTV 126
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLGL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 127 PAIFLVSLFVTsPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSG 206
Cdd:cd06261   75 PALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 493691198 207 AIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIAL 243
Cdd:cd06261  154 GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 59-215 5.77e-10

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 57.17  E-value: 5.77e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  59 INMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahDIKIMFTVPAIFLVSLFVTS 138
Cdd:NF038017  11 IAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLG------FLGLLYTPTAMIIAQAVLAL 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493691198 139 PFVARelIPLMEVQGSDEE--EAALTLGASAWQTFFYVtLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTL 215
Cdd:NF038017  85 PIVAG--LTLAAVQGLDPElrLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNIRGYTRVL 160
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 73-255 1.62e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.21  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   73 KFRFPGRRLLITFVEIPFSVsPIVAGVTYLFLYGSQGLLGpfleahdikimFTVPAIFLVSLFVTSPFVARELIPLMEVQ 152
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQAL-PSFVLAILLVVIAILSILG-----------HGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  153 GSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVsGAIRGKTNTLPLQVELLFNDYNVAGAF 232
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSWPGLGLLLIEAILGYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|...
gi 493691198  233 AAASTLALIALVTLVLKVFLERK 255
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
CysW COG4208
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-257 3.29e-156

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443356  Cd Length: 281  Bit Score: 435.31  E-value: 3.29e-156
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRL 81
Cdd:COG4208   21 LIGLALLFLALFLVLPLAAVFAEAFSKGWGAYLAALTDPDALSAIRLTLLVAAIAVPLNLVFGVAAAWAITRFEFRGKRL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  82 LITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAAL 161
Cdd:COG4208  101 LITLIDLPFSVSPVVAGLIYVLLFGAQGWFGPWLEAHDIKIIFAVPGIVLATIFVTFPFVARELIPLMQEQGTDEEEAAL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 162 TLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALI 241
Cdd:COG4208  181 TLGASGWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGETNTLPLHVEILYNEYNFVAAFAVASLLALL 260

                        250
                 ....*....|....*.
gi 493691198 242 ALVTLVLKVFLERKQH 257
Cdd:COG4208  261 ALVTLVLKTLLEWRTA 276
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 1-258 1.00e-139

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 392.91  E-value: 1.00e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198    1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:TIGR02140   4 LLISLALGLLFLLLLLPLALIFQEAFEKGFGVFFAAISDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAA 160
Cdd:TIGR02140  84 LLLTIIDLPFSVSPVVAGLIFVLLYGSQGWLGPWLEDLDIKIIFSLPGIVLATMFVTCPFVARELIPVMEEQGTEQEEAA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  161 LTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLAL 240
Cdd:TIGR02140 164 LTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGKTNTLPLHVELLYNEYQSYAAFAAASLLAL 243

                         250
                  ....*....|....*...
gi 493691198  241 IALVTLVLKVFLERKQHS 258
Cdd:TIGR02140 244 LALVTLVLKAILERRQGR 261
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
1-255 5.31e-108

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 313.23  E-value: 5.31e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:PRK11602  21 FLIGIGMLVSAFILVVPMIYIFVQAFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQ 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAA 160
Cdd:PRK11602 101 LLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 161 LTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLAL 240
Cdd:PRK11602 181 ILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTL 260

                        250
                 ....*....|....*
gi 493691198 241 IALVTLVLKVFLERK 255
Cdd:PRK11602 261 MAIITLFLKSMLQWR 275
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 17-253 2.03e-86

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 258.05  E-value: 2.03e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   17 PLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIV 96
Cdd:TIGR00969  33 PVAALFVQAFSKGLGQFWQNATDPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVV 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   97 AGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTL 176
Cdd:TIGR00969 113 AGLTLALLYGSNGWLGSWLASFGIQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTL 192

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493691198  177 PNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIALVTLVLKVFLE 253
Cdd:TIGR00969 193 PSIRWALLYGVVLTFARALGEFGAVVVVSGNIPGKTLTLPLLIEERLEQYDYPGAYVIAAVLLLVSLVTLFLINALQ 269
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-248 1.61e-63

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 199.59  E-value: 1.61e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRL 81
Cdd:COG0555   12 TLGLTLLYLSLIVLLPLAALVLKAAGLGWAEFWAVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  82 LITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAAL 161
Cdd:COG0555   92 VDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAA 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 162 TLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALI 241
Cdd:COG0555  172 TLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIAGNLPMKTEILPLLIYLKLEEGDYAGATAIALVLLLI 251


                 ....*..
gi 493691198 242 ALVTLVL 248
Cdd:COG0555  252 SFLLLLL 258
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 38-256 1.27e-47

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 157.52  E-value: 1.27e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  38 LKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEA 117
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 118 H-DIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMG 196
Cdd:COG4149   81 LfGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 197 EFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIALVTLVLKVFLERKQ 256
Cdd:COG4149  161 EFGATLMFAGNIPGKTQTLPLAIYDAVEAGDYAAAHALSLILLAISFVVLLLLNLLNRRR 220
cysT CHL00187
sulfate transport protein; Provisional
 1-226 1.59e-46

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 155.17  E-value: 1.59e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:CHL00187  12 SIYIISLSYIIFLLVLPILALLIKASQQPWSDFLQKATEPIALSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAA 160
Cdd:CHL00187  92 LLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAA 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493691198 161 LTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDY 226
Cdd:CHL00187 172 WSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSIVIISSNIPFKDLVASVLIFQSLEQY 237
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 5-248 1.85e-43

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 147.86  E-value: 1.85e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198    5 LAAGLSVLCIG----APLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:TIGR02139   7 LSLGVTLTYLSlivlLPLAALFLKASQLGWAGFWQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKR 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAA 160
Cdd:TIGR02139  87 IVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLGIKIAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAA 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  161 LTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLAL 240
Cdd:TIGR02139 167 ASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSVIFIAGNLPMKTEIAPLLIFQKLEQYDYAGATAIASVMLI 246


                  ....*...
gi 493691198  241 IALVTLVL 248
Cdd:TIGR02139 247 ISFVILLF 254
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 33-248 4.78e-43

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 145.62  E-value: 4.78e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   33 FFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLG 112
Cdd:TIGR01581  10 ILSALTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLG 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  113 PFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNA 192
Cdd:TIGR01581  90 PYLEAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWA 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 493691198  193 RVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIALVTLVL 248
Cdd:TIGR01581 170 RALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVASALLLLVIAFLLLLV 225
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 47-244 4.94e-40

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 137.37  E-value: 4.94e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   47 WLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTV 126
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGISLVFTF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  127 PAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSG 206
Cdd:TIGR02141  81 TGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAG 160

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 493691198  207 AIRGKTNTLPLQVELLfndynVAGAFAAASTLALIALV 244
Cdd:TIGR02141 161 NIPGETQTIPLAIYDA-----VESDYELAHQLSLVLLA 193
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
33-246 1.64e-37

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 132.96  E-value: 1.64e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  33 FFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLG 112
Cdd:PRK10971  47 YWEVITNPQVVAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYG 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 113 PFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNA 192
Cdd:PRK10971 127 EWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFT 206

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493691198 193 RVMGEFGATSVVSGAIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIALVTL 246
Cdd:PRK10971 207 RSLGEFGAVIFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLL 260
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-256 3.43e-34

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 128.74  E-value: 3.43e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:COG1178   11 LLLLLLALLLALLVLLPLLALLLRAFTDGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAH---DIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEE 157
Cdd:COG1178   91 LLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfglEPPDIYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLE 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 158 EAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVvsgaIRGKTNTLPLQV-ELLFNDYNVAGAFAAAS 236
Cdd:COG1178  171 EAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLV----LGGGYTTLTTAIyQAWLGDFDLGAAAALAL 246

                        250       260
                 ....*....|....*....|
gi 493691198 237 TLALIALVTLVLKVFLERKQ 256
Cdd:COG1178  247 VLLLLVLLLLLLERRLRRRR 266
modB PRK09421
molybdate ABC transporter permease subunit;
37-257 6.81e-29

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 109.24  E-value: 6.81e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  37 ILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLE 116
Cdd:PRK09421   2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 117 AH-DIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVM 195
Cdd:PRK09421  82 EWfGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493691198 196 GEFGATSVVSGAIRGKTNTLPLQvelLFNDYNVAGAFAAASTLALI----ALVTLVLKVFLERKQH 257
Cdd:PRK09421 162 GEFGATITFVSNIPGETQTIPSA---MYTLIQTPGGESAAARLCIIsiaiALASLLLSEWLARRSR 224
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-254 1.72e-26

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 107.55  E-value: 1.72e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFS------EILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFR 75
Cdd:COG1178  290 ALALCLLLVLLGLLLPLLALLLWSLTKALDDNLTldnyrfVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRR 369

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  76 FPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahdikIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSD 155
Cdd:COG1178  370 GRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLL---------LYGTLAILVLAYVVRFLPFALRSLEAALAQIDPS 440

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 156 EEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAirgKTNTLPLQVELLFNDYNVAGAFAAA 235
Cdd:COG1178  441 LEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPP---GFETLAVLIYQLASSGRYGEAAALA 517

                        250
                 ....*....|....*....
gi 493691198 236 stlALIALVTLVLKVFLER 254
Cdd:COG1178  518 ---LLLVLVSLLPVLLLER 533
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 1-256 3.59e-26

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 102.88  E-value: 3.59e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   1 MLIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVFF----------SEILK-PDTLHAVWLTVLTAIVVVPINMAFGVCVAW 69
Cdd:COG1177    7 LLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFppegftlrwyAELFSdPRLLDALLNSLLIALLSTLLATVLGTPAAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  70 LVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahdikimfTVPAIFLVSLFVTSPFVARELIPLM 149
Cdd:COG1177   87 ALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSG------------GLWGLILAHVVFTLPFVVLVVLARL 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 150 EVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGairGKTNTLPLQVELLFNDYNVA 229
Cdd:COG1177  155 QGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAG---PGVTTLPVYIYSMIRRGISP 231

                        250       260
                 ....*....|....*....|....*..
gi 493691198 230 GAFAAASTLALIALVTLVLKVFLERKQ 256
Cdd:COG1177  232 EINALSTLLILLSLLLLLLAERLRRRG 258
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 2-255 1.32e-20

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 88.28  E-value: 1.32e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVF----------FSEILK-PDTLHAVWLTVLTAIVVVPINMAFGVCVAWL 70
Cdd:COG1176   14 LLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGgvvpgftlenYARLFTdPLYLKVLLRTLWIALLTTLICLLLGYPIAYF 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  71 VTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEA-----HDIKIMFTVPAIFLVSLFVTSPFVAREL 145
Cdd:COG1176   94 LARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLAlglidEPLRLLYTEFAVVIGLVYVYLPFMVLPL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 146 IPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGairGKTNTLPLQVELLF-- 223
Cdd:COG1176  174 YAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGG---GKVLMIGNLIYQQFls 250

                        250       260       270
                 ....*....|....*....|....*....|...
gi 493691198 224 -NDYNVAGAFAAASTLALIALVTLVLKVFLERK 255
Cdd:COG1176  251 aLNWPLAAALAVVLLLIVLLVLLLYLRLLRRRR 283
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
40-256 1.52e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 82.88  E-value: 1.52e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  40 PDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKfRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQ-GLLGPFLEAH 118
Cdd:COG1175   72 PRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR-KLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDyGLLNALLGAL 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 119 DIK-IMFTV------PAIFLVSLFVTSPFVAreLIPLMEVQGSDEE--EAALTLGASAWQTFFYVTLPNIKWALLYGAVL 189
Cdd:COG1175  151 GLEpINWLGdpslalPAVIIVTVWKGTGFNM--LIFLAGLQSIPRElyEAARIDGASPWQRFRRITLPLLRPTILFVLVL 228

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493691198 190 cnaRVMGEFGATSVV----SGAIRGKTNTLPLQV-ELLFNDYNVAGAFAAASTLALIALVTLVLKVFLERKQ 256
Cdd:COG1175  229 ---STIGALQVFDLVyvltGGGPGNSTTTLVLYIyQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRR 297
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 47-243 2.88e-17

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 77.32  E-value: 2.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  47 WLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahdIKIMFTV 126
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG-------ILPGLGL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 127 PAIFLVSLFVTsPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSG 206
Cdd:cd06261   75 PALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 493691198 207 AIRGKTNTLPLQVELLFNDYNVAGAFAAASTLALIAL 243
Cdd:cd06261  154 GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-206 3.55e-16

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 77.41  E-value: 3.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   11 VLCIGAPLAVIFSYAFSKGIHVF-----FSEILKPDTL-----HAVWLTVLTAIVVVPINMAFgvcvAWLVTKFRFPGRR 80
Cdd:TIGR03262  15 LLFLLLPLLALLTKSVYDSDGDFiglanFAEYFATPGLlqslgNSLTVSAIVTAIVVPLAFAF----AYALTRSRIPGKG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   81 LLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIkimFTVPAIFLVSLFVTSPFVAreLIPLMEVQGSDEE--E 158
Cdd:TIGR03262  91 AFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI---YGFWGIVIGEVFYTFPHAL--MILVTALSLADGRlyE 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 493691198  159 AALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSG 206
Cdd:TIGR03262 166 AARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGG 213
PhnU TIGR03226
2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease ...
 41-246 2.69e-10

2-aminoethylphosphonate ABC transporter, permease protein; This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).


Pssm-ID: 274484  Cd Length: 288  Bit Score: 59.19  E-value: 2.69e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   41 DTLHAVWLTVLTAIVVvpinmafGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFL----- 115
Cdd:TIGR03226  72 NTLQIAFAAAGGALVL-------GSLLAAILFFIPFPGAQLVGRFIDLFIAFPSFLIAFAFIFIYGSAGLLNGALmaafa 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  116 -EAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARV 194
Cdd:TIGR03226 145 fDAPPLDFLFGAGGVILAEITFFTPFVMRPLLAGFAQIDKRLLEAASILGAHGLMLARQVIFPAALPAIAAGGILCFLLT 224

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 493691198  195 MGEFGATSVVSGAirgKTNTLPLQV---ELLFNDYNVAGAFAAASTLALIALVTL 246
Cdd:TIGR03226 225 LNEFGILLFIGAA---GLITLPMAIyskAILDIDLPAAAAGALIMIALSLALFAL 276
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-254 4.10e-10

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 58.57  E-value: 4.10e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGAPLAVIFSYAFSKGIHVF---------------FSEIL-KPDTLHAVWLTVLTAIVVVPINMAFGV 65
Cdd:COG0395   16 LLYLLLILLALLFLFPLYWMVVTSFKPPAEIFsgppsllpseftlenYRAAFtDGPFGRYLLNSLIVAVVSTVLSLLLSS 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  66 CVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahdikimfTVPAIFLVSLFVTSPF----- 140
Cdd:COG0395   96 LAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLN------------TYWGLILPYLAFGLPFgifll 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 141 ------VARELiplmevqgsdeEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEF-GATSVVSGAirgKTN 213
Cdd:COG0395  164 rqffrsIPREL-----------EEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFlWPLILLTSP---DLR 229

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 493691198 214 TLPLQVELLFNDYNVA-GAFAAASTLAliALVTLVLKVFLER 254
Cdd:COG0395  230 TLPVGLASFQGQYGTDwGLLMAAAVIA--TLPVLILFLFLQR 269
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 59-215 5.77e-10

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 57.17  E-value: 5.77e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  59 INMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGpfleahDIKIMFTVPAIFLVSLFVTS 138
Cdd:NF038017  11 IAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLG------FLGLLYTPTAMIIAQAVLAL 84

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 493691198 139 PFVARelIPLMEVQGSDEE--EAALTLGASAWQTFFYVtLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTL 215
Cdd:NF038017  85 PIVAG--LTLAAVQGLDPElrLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGNIRGYTRVL 160
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 40-252 4.99e-09

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 55.78  E-value: 4.99e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  40 PDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFL---- 115
Cdd:PRK15050  69 PDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALqrlf 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 116 --EAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNAR 193
Cdd:PRK15050 149 glEAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLL 228

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 493691198 194 VMGEFGATSVVSGAirgKTNTLPLQVellfndYNVAGAFAAASTLALIALVTLVLKVFL 252
Cdd:PRK15050 229 TLNEFGIVLFTGAK---DVVTLPVLI------YSKAIVDFDYPTACAIAVVNLALSLGL 278
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 4-189 2.06e-08

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 54.46  E-value: 2.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   4 WLAAGLSVLCIGAPLAVIFSYAFSKGIHVFFSEilkPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLI 83
Cdd:PRK09433   7 VLAAALLVALALLALLALWLHAPGGDWDAVWQD---SYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  84 TFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTV---PAIFLVSLFVTSPFVAR------ELIPlmevqgS 154
Cdd:PRK09433  84 RLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLLQALGLEWPFSIyglQGILLAHVFFNLPLATRlllqalESIP------A 157

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 493691198 155 DEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVL 189
Cdd:PRK09433 158 EQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAAL 192
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 16-246 1.14e-07

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 51.19  E-value: 1.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  16 APLAVIFSYAFSKGIHV----FFSEILKPDT-----LHA----VWLTVLTAIVVVPInmafGVCVAWLVTKFRFPGR--R 80
Cdd:COG0581    4 LPLVWILGTVLVKGLPAlsweFLTSSPSPGPegggiLPAivgtLLLVLLATLIAVPL----GVLAAIYLAEYARGGRlaR 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  81 LLITFVEIPFSVSPIVAGvtyLFLYGsqgLLGPFLEAHdikimftvPAIFLVSL---FVTSPFVAR------ELIPlmev 151
Cdd:COG0581   80 LIRFAIDVLAGVPSIVYG---LFGYA---LFVLTLGLG--------FSLLAGALalaLLMLPVVIRtteealRLVP---- 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 152 qgSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGE-------FGATSVVSGAIRGKTNTLPLQV-ELLF 223
Cdd:COG0581  142 --NSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAGEtapllftAGVSPFLPLSLFDPFATLPVHIyNLAS 219

                        250       260
                 ....*....|....*....|...
gi 493691198 224 NDYNVAGAFAAASTLALIALVTL 246
Cdd:COG0581  220 SPYPAAQELAWAAALVLLLLVLL 242
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 4-257 2.19e-07

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 50.73  E-value: 2.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198    4 WLAAGLSVLCIGAPLAVIFSYAFS--------KGIHVFFSEILKPDT---------LHAVWLTVLTAIVVVPINMAFGVC 66
Cdd:TIGR02138   6 GLLLFSAVIIVLVLLLIVLFLLYEaipafeknGILNFLTGTVWDPGSgpvqeqygaLPLIVGTLITSLIALLIAVPVGIG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   67 VAWLVTKFRFP-GRRLLITFVEIPFSVSPIVAGVTYLFLYGS--QGLLGPFLEAHDIKIMFTVPAIFLVSLFVT---SPF 140
Cdd:TIGR02138  86 IAIFLSEIAPKrVRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSNLGLIPLFGGPILTAGIVLAimiLPT 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  141 VARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGA--------IRGKT 212
Cdd:TIGR02138 166 IASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGETMAVTMVIGNvfpisplsLFDPG 245

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 493691198  213 NTLPLQVELLFND-----YNVAGAFAAASTLALIALVTLVLKVFLERKQH 257
Cdd:TIGR02138 246 TTITSLIANQFGEasggsVHTSALFALGLVLFVITLLVNILARYIVRRRR 295
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 34-251 1.47e-06

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 48.15  E-value: 1.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  34 FSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGP 113
Cdd:PRK09497  53 YTRLLDPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNE 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 114 FLEAHD-----IKIMFTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAV 188
Cdd:PRK09497 133 FLLWLGvidtpIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCL 212

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493691198 189 LCNARVMGEFGATSVVSGAirgKT----NTLPLQVeLLFNDYnvagAFAAASTLALIALVTLVLKVF 251
Cdd:PRK09497 213 LVLLPAMGMFYVSDLLGGA---KNlligNVIKSQF-LNIRDW----PFGAATSITLTIVMGLMLLVY 271
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 73-255 1.62e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.21  E-value: 1.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   73 KFRFPGRRLLITFVEIPFSVsPIVAGVTYLFLYGSQGLLGpfleahdikimFTVPAIFLVSLFVTSPFVARELIPLMEVQ 152
Cdd:pfam00528  11 RRGRRLDRLLRPLIDLLQAL-PSFVLAILLVVIAILSILG-----------HGILPAIILALLGWAGYARLIRRAALRSL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  153 GSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVsGAIRGKTNTLPLQVELLFNDYNVAGAF 232
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL-GSWPGLGLLLIEAILGYDYPEIQGPVL 157

                         170       180
                  ....*....|....*....|...
gi 493691198  233 AAASTLALIALVTLVLKVFLERK 255
Cdd:pfam00528 158 AAALILLLLNLLVDILQRLLDPR 180
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 16-248 4.78e-05

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 43.64  E-value: 4.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  16 APLAVIFSYAFSKGIHVF----FSEILKPDTLHAVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPG-RRLLITFVeipf 90
Cdd:COG4132   31 LPTVWVVIGAFQDDDGGFtlanYAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGPGWlRRAVLAFS---- 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  91 SVSPIVAGVT----YLFLYGSQGLLGPFLEAHDIKIM-----FTVPAIFLVSLFVTSPFVARELIPLMEVQGSDEEEAAL 161
Cdd:COG4132  107 GVASNFAGVPlafaFIATLGRNGLVTLLLKQLGIDLYdgfnlYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAA 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 162 TLGASAWQTFFYVTLPNIKWALLYGAVL--CNArvmgeFGATSVVSGAIRGKTNTLPLQVELL-----FNDYNVAGAFAa 234
Cdd:COG4132  187 LLGASRWQYWRRVALPVLAPSLLGTFLLlfANA-----FGAYATAYALTGGNYNLVPIRIGALisgdvLLDPNLGAALA- 260

                        250
                 ....*....|....
gi 493691198 235 astLALIALVTLVL 248
Cdd:COG4132  261 ---LGMIVIMALVM 271
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 2-254 4.94e-05

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 43.60  E-value: 4.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   2 LIWLAAGLSVLCIGA--PLAVIFSYAFSKGIHVFFSEIL--KPDTLHAVWL------------TVLTAIVVVPINMAFGV 65
Cdd:COG3833   15 LGLRHLVLIILAIIAlfPILWVVSASFNPGGSLYSSSLIpeNFTLENYKKLftetpflrwflnSLIVAVVTAIISVFLAA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  66 CVAWLVTKFRFPGRRLLITFVEIpFSVSPIVAGVTYLFLYGSQ-GLLGpfleahdikimfTVPAIFLVSLFVTSPF---- 140
Cdd:COG3833   95 LAAYAFSRFRFKGRKAGLLALLL-LQMFPAFLALVALYLLLSAlGLLN------------TLLGLILVYLGGAIPFntwl 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 141 -------VARELiplmevqgsdeEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFgatsVVSGAIRGKTN 213
Cdd:COG3833  162 mkgyfdtIPKEL-----------DEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDF----ILASVLLRSPE 226

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 493691198 214 TLPLQVEL---LFNDYNVA-GAFAAASTlaLIALVTLVLKVFLER 254
Cdd:COG3833  227 NYTLAVGLysfVSDQRNTNwGVFAAGAV--LVAIPIVILFLFLQR 269
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 4-255 6.24e-04

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 40.67  E-value: 6.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198    4 WLAAGLSVLCI------GAPLAVIFSYAFSKGIHVFFSEILKPDTLHAVWLTVLTAIVVVpinmAFGVCVAWLVTKFRFP 77
Cdd:TIGR01253   5 HLAGGVSAISFiiafagAAFLAIFALAGEDDWRAVFQDDYLQHLILFSFGQAFLSALLSI----FFAIFLARALFRKPFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   78 GRRLLITFVEIPFSVSPIVAGVTYLFLYGSQGLLGPFLEAHDIKIMFTV---PAIFLVSLFVTSPFVARELIPLMEVQGS 154
Cdd:TIGR01253  81 GKKALLKLCALTFILPALVAIFGIIGIYGRQGWLATLANLFGLEWQFHIyglQGILIAHLFFNIPLAAQLFLQALENIPG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  155 DEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELLFnDYNVagafAA 234
Cdd:TIGR01253 161 EQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCFASFATVLSLGGGPQATTIELAIYQAILF-DFDL----AK 235

                         250       260
                  ....*....|....*....|.
gi 493691198  235 ASTLALIALVTLVLKVFLERK 255
Cdd:TIGR01253 236 AALFALLQFVCCLGLFLLSQR 256
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 2-255 3.31e-03

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 37.99  E-value: 3.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198    2 LIWLAAGLSVLcigaPLAVIFSYAFSKGIHV----FFSEILKPDT-----LHAVWLTVLTAIVVVPINMAFGVCVAWLVT 72
Cdd:TIGR00974   7 ISLLSALLALL----PLIWILWYILIKGLPAlnleFFTKSPTPTGaeggiGPAIVGTLLLTLLAIVIAVPLGIGAAIYLA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   73 KFRFPGRRL-LITF-VEIPFSVSPIVAGvtyLFLYGsqgllgpFLEAHDIKIMFTVPAIFLVSLFVTSPFVARELIPLME 150
Cdd:TIGR00974  83 EYANGSRFTkIIRFaVDILAGVPSIVVG---LFGYG-------FFVLTYLGGGFSLLAGALALALLILPVIIRTTEEALK 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  151 VQGSDEEEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATSVVSGAIRGKTNTLPLQVELL-FNDYNVA 229
Cdd:TIGR00974 153 AVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAGETAPLLFTAGGSAFTPPNLFDPFATLpVLIYNLA 232

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 493691198  230 G----------AFAAASTLALIALVTLVLKVFLERK 255
Cdd:TIGR00974 233 SegpyveaqqlAWAAALVLIVLVLLLNLIARLLRRR 268
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 157-255 6.74e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 36.99  E-value: 6.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 157 EEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGE-------FGATSVVSGAIRGKTNTLPLQVELLFNDYNVA 229
Cdd:COG0573  187 REAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGEtmavlmvAGNAPQIPFSLFDPGRTLTALIALEFGEAPFG 266

                         90       100       110
                 ....*....|....*....|....*....|.
gi 493691198 230 G-----AFAAASTLALIALVTLVLKVFLERK 255
Cdd:COG0573  267 SlhysaLFALGLVLFVITLLVNLLARLIVRR 297
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 3-254 7.70e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 37.12  E-value: 7.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198   3 IWLAAGLsvLCIGAPL-AVIFSyafskGIHVFFSEILKPDTLH-AVWLTVLTAIVVVPINMAFGVCVAWLVTKFRFPGRR 80
Cdd:PRK09433 283 LLIVLAL--LLLLPPLlAVVVS-----GLNASLLRVLAQPALWqALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRK 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198  81 LLITFVE----IPFSVSPIVAGvTYLFLygsqgLLGPFLEAHDIKIMFTVpaifLVSLFVTSPFVARELIPLMEVQGSDE 156
Cdd:PRK09433 356 LAAQALElsgmLILAMPGIVLA-TGLFL-----LLRNTTDLPASALGIVI----LTNALMALPYALRVLEPPMRDIAARY 425

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493691198 157 EEAALTLGASAWQTFFYVTLPNIKWALLYGAVLCNARVMGEFGATsvvsgAIRGKTN--TLPLQVellfndYNVAGAF-- 232
Cdd:PRK09433 426 GRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLGDFGVI-----ALFGSQDfrTLPFLL------YQQLGSYrs 494

                        250       260
                 ....*....|....*....|...
gi 493691198 233 -AAASTLALIALVTLVLKVFLER 254
Cdd:PRK09433 495 qDAAVTALLLLLLCLLLFTLIER 517
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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