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Conserved domains on  [gi|493739754|ref|WP_006688892|]
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arginine--tRNA ligase [Ureaplasma parvum]

Protein Classification

arginine--tRNA ligase( domain architecture ID 11414312)

arginine--tRNA ligase catalyzes the esterification reaction between L-arginine and its cognate tRNA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ArgS COG0018
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ...
2-549 3.24e-179

Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


:

Pssm-ID: 439789 [Multi-domain]  Cd Length: 574  Bit Score: 517.01  E-value: 3.24e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   2 ITQKISEELNKALAKMGIhDTQETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQ-DLFLEVNLQPP 80
Cdd:COG0018    3 IKEELAEAIAAALAALGA-GLEEPDILVERPKDPEHGDYATNVAMQLAKPLKKNPREIAEEIAEALDAdPLVEKVEIAGP 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  81 GFLNFKLKAKDHENLLKQIYYEKDRFGQF-SKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYW 159
Cdd:COG0018   82 GFINFFLSPAALAAVLKEILADGEDYGRSdAGKGKKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAGYDVTRENY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 160 INDAGNQIDKLAMSVLvRYLQlQNINIQLPADAYHGQeihlvaqtLYQTYKNQFINV--------RLNEKYEiDDDIANQ 231
Cdd:COG0018  162 INDAGTQIGKLALSLE-RYGE-EEIEPESKPDGYLGD--------LYVKFHKEYEEDpelediarELLAKLE-PGDEEAL 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 232 EIKNFAVKYLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKI--KPYTYTLDGALWLKTTTFGDDKDRVLIKSDG 309
Cdd:COG0018  231 ELWKKAVDWSLEEIKEDLKRLGVEFDVWFSESSLYDSGAVEEVVEELkeKGLLYESDGALWVRLTEFGDDKDRVLVKSDG 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 310 SYTYFTPDIAYHDYKFNKTNTTKLIDVWGTDHLGYIARLKAAMNALGYDP-NNLEIVCAQVMKLvKNNQefKLSKRSGQS 388
Cdd:COG0018  311 TYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGYDPaKDLEHLLFGMVNL-RDGE--KMSTRAGTV 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 389 LTIKDLVE-----------------------IIGKDALRWFLGSSSMNSHVIIDVDIALS-KNNNNPlyYVQYAHARANQ 444
Cdd:COG0018  388 VTLDDLLDeaverareiieekseeekeeiaeQVGIDAVRYFDLSRSRDKDLDFDLDLALSfEGNTNP--YVQYAHARICS 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 445 VLNKQVYELDFKTD----LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKVLS 520
Cdd:COG0018  466 ILRKAGEELDGLAEadlsLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNACRILKAEDEELR 545
                        570       580
                 ....*....|....*....|....*....
gi 493739754 521 AQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:COG0018  546 AARLALVAATAQVLKNGLGLLGISAPERM 574
 
Name Accession Description Interval E-value
ArgS COG0018
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ...
2-549 3.24e-179

Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439789 [Multi-domain]  Cd Length: 574  Bit Score: 517.01  E-value: 3.24e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   2 ITQKISEELNKALAKMGIhDTQETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQ-DLFLEVNLQPP 80
Cdd:COG0018    3 IKEELAEAIAAALAALGA-GLEEPDILVERPKDPEHGDYATNVAMQLAKPLKKNPREIAEEIAEALDAdPLVEKVEIAGP 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  81 GFLNFKLKAKDHENLLKQIYYEKDRFGQF-SKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYW 159
Cdd:COG0018   82 GFINFFLSPAALAAVLKEILADGEDYGRSdAGKGKKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAGYDVTRENY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 160 INDAGNQIDKLAMSVLvRYLQlQNINIQLPADAYHGQeihlvaqtLYQTYKNQFINV--------RLNEKYEiDDDIANQ 231
Cdd:COG0018  162 INDAGTQIGKLALSLE-RYGE-EEIEPESKPDGYLGD--------LYVKFHKEYEEDpelediarELLAKLE-PGDEEAL 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 232 EIKNFAVKYLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKI--KPYTYTLDGALWLKTTTFGDDKDRVLIKSDG 309
Cdd:COG0018  231 ELWKKAVDWSLEEIKEDLKRLGVEFDVWFSESSLYDSGAVEEVVEELkeKGLLYESDGALWVRLTEFGDDKDRVLVKSDG 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 310 SYTYFTPDIAYHDYKFNKTNTTKLIDVWGTDHLGYIARLKAAMNALGYDP-NNLEIVCAQVMKLvKNNQefKLSKRSGQS 388
Cdd:COG0018  311 TYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGYDPaKDLEHLLFGMVNL-RDGE--KMSTRAGTV 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 389 LTIKDLVE-----------------------IIGKDALRWFLGSSSMNSHVIIDVDIALS-KNNNNPlyYVQYAHARANQ 444
Cdd:COG0018  388 VTLDDLLDeaverareiieekseeekeeiaeQVGIDAVRYFDLSRSRDKDLDFDLDLALSfEGNTNP--YVQYAHARICS 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 445 VLNKQVYELDFKTD----LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKVLS 520
Cdd:COG0018  466 ILRKAGEELDGLAEadlsLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNACRILKAEDEELR 545
                        570       580
                 ....*....|....*....|....*....
gi 493739754 521 AQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:COG0018  546 AARLALVAATAQVLKNGLGLLGISAPERM 574
argS PRK01611
arginyl-tRNA synthetase; Reviewed
1-549 1.54e-177

arginyl-tRNA synthetase; Reviewed


Pssm-ID: 234964 [Multi-domain]  Cd Length: 507  Bit Score: 510.08  E-value: 1.54e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   1 MITQKISEELNKALAKMGIHDTQEtkILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEqdlflEVNLQPP 80
Cdd:PRK01611   4 DIKELLAEALAAALEAGGLPELPA--VLIERPKDPEHGDYATNVAMQLAKKLKKNPREIAEEIVEAIE-----KVEIAGP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  81 GFLNFKLKAKDHENLLKQIYYEKDRFGQF-SKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYW 159
Cdd:PRK01611  77 GFINFFLDPAALAELVLAILEAGERYGRSdIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYY 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 160 INDAGNQIDKLAMSVlvrylqlqniniqlpadayhgqeihlvaqtlyqtyknqfinvrlnekyeidddianQEIKNFAVK 239
Cdd:PRK01611 157 VNDAGTQIGMLIASL--------------------------------------------------------ELLWRKAVD 180
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 240 YLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKI--KPYTYTL-DGALWLKTTTFGDDKDRVLIKSDGSYTYFTP 316
Cdd:PRK01611 181 ISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLkeKGLLYVEsDGALWVRLTEFGDDKDRVLIKSDGTYTYFTR 260
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 317 DIAYHDYKFNKTNttKLIDVWGTDHLGYIARLKAAMNALGYDPNNLEIVCAQVMKLVKNNQEFKLSKRSGQSLTIKDLVE 396
Cdd:PRK01611 261 DIAYHLYKFERFD--RVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLD 338
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 397 -----------------IIGKDALRWFLGSSSMNSHVIIDVDIALSKNNNNPLyYVQYAHARANQVLNK-QVYELDFKTD 458
Cdd:PRK01611 339 eavgrarelieekeiaeAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPP-YVQYAHARICSILRKaAEAGIDLLLA 417
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 459 LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKVLSAqRYTLVWCVKQVLANGL 538
Cdd:PRK01611 418 LLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVLLKDEEEELRNA-RLALVKATAQVLKNGL 496
                        570
                 ....*....|.
gi 493739754 539 AIMKITPYDQM 549
Cdd:PRK01611 497 DLLGISAPERM 507
argS TIGR00456
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ...
2-549 1.46e-135

arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273085 [Multi-domain]  Cd Length: 563  Bit Score: 405.19  E-value: 1.46e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754    2 ITQKISEELNKALAKMGIHDtqETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQDLFLEVNLQPPG 81
Cdd:TIGR00456   1 IKTLLKEEISQALLKAGLSK--ESEILVEETPNPEFGDYASNIAFPLAKVLKKAPRQIAEEIVLKLKTGEIIEKVEAAGP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   82 FLNFKLKAKDH-ENLLKQIYYEKDRFGQFSKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWI 160
Cdd:TIGR00456  79 FINFFLSPQKLlERLIQKILTQKEKYGSKKLKNKKIIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFLGYDVIREYYV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  161 NDAGNQIDKLAMSVLVRYLQLQNINIQLPADAYHGQEIHlvaqtlyqtyknqfINVRLNEKYEIDD------------DI 228
Cdd:TIGR00456 159 NDWGRQFGLLALGVEKFGNEALNIAVKKPDHGLEGFYVE--------------INKRLEENEELEEearelfvklesgDE 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  229 ANQEIKNFAVKYLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKIKPYTYTL-DGALWLKTTTFGDDKDRVLIKS 307
Cdd:TIGR00456 225 ETIKLWKRLVEYSLEGIKETYDRLNIHFDSFVWEGESVKNGMLPKVLEDLKEKGLVVeDGALWLDLTLFGDKKDRVLQKS 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  308 DGSYTYFTPDIAYHDYKFnKTNTTKLIDVWGTDHLGYIARLKAAMNALGYDPNNLEIVCAQVMKLVK-----------NN 376
Cdd:TIGR00456 305 DGTYLYLTTDIAYHLDKL-ERGFDKMIYVWGSDHHLHIAQMFAILEKLGYKKKELEHLNFGMVPLYSmktrrgnvislDN 383
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  377 QEFKLSKRSGQSLTIK------DLVEIIGKDALRWFLGSSSMNSHVIIDVDIALSkNNNNPLYYVQYAHARANQVLNKQV 450
Cdd:TIGR00456 384 LLDEASKRAGNVITIKndleeeKVADAVGIGAVRYFDLSKNRTTDYVFDWDAMLS-FEGNTAPYIQYAHARICSILRKAE 462
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  451 Y---ELDFKTDLLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKvLSAQRYTLV 527
Cdd:TIGR00456 463 IdgeKLIADDFELLEEKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENE-LAAARLALL 541
                         570       580
                  ....*....|....*....|..
gi 493739754  528 WCVKQVLANGLAIMKITPYDQM 549
Cdd:TIGR00456 542 KATRQTLKNGLDLLGIEPPERM 563
ArgRS_core cd00671
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ...
115-386 2.78e-66

catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.


Pssm-ID: 185675 [Multi-domain]  Cd Length: 212  Bit Score: 213.96  E-value: 2.78e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 115 TYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWINDAGNQIDKLAMSvlvrylqlqniniqlpadayh 194
Cdd:cd00671    1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILS--------------------- 59
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 195 gqeihlvaqtlyqtyknqfinvrlnekYEIDDDIANQEIKnfavkyllnEIKNDLASINTFIDTYTSENWIRN-SGRILE 273
Cdd:cd00671   60 ---------------------------LEKWRKLVEESIK---------ADLETYGRLDVRFDVWFGESSYLGlMGKVVE 103
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 274 VLSKiKPYTYTLDGALWLKTTTFGDDKDRVLIKSDGSYTYFTPDIAYHDYKFNkTNTTKLIDVWGTDHLGYIARLKAAMN 353
Cdd:cd00671  104 LLEE-LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALE 181
                        250       260       270
                 ....*....|....*....|....*....|....
gi 493739754 354 ALGYD-PNNLEIVCAQVMKLVKnnqEFKLSKRSG 386
Cdd:cd00671  182 LLGYDeAKKLEHLLYGMVNLPK---EGKMSTRAG 212
DALR_1 smart00836
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
435-549 1.06e-36

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.


Pssm-ID: 214846 [Multi-domain]  Cd Length: 122  Bit Score: 132.32  E-value: 1.06e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   435 VQYAHARANQVLNK---QVYELDFKTD----LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYA 507
Cdd:smart00836   1 VQYAHARICSILRKageAGETLPDIADadlsLLTEPEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSFYN 80
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 493739754   508 NVKINNDNNKVLSAQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:smart00836  81 RVRVLGEENPELRKARLALLKAVRQVLANGLRLLGISAPERM 122
DALR_1 pfam05746
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
435-549 1.82e-34

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteriztic conserved amino acids.


Pssm-ID: 399042 [Multi-domain]  Cd Length: 117  Bit Score: 125.84  E-value: 1.82e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  435 VQYAHARANQVLNK---QVYELDFKTDLLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKI 511
Cdd:pfam05746   1 LQYAHARICSILRKageLGINLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPHRLANYLYELASAFHSFYNNCRV 80
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 493739754  512 NNDNNKVLsAQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:pfam05746  81 LDEDNEER-NARLALLKAVRQVLKNGLDLLGIEAPEKM 117
 
Name Accession Description Interval E-value
ArgS COG0018
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ...
2-549 3.24e-179

Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439789 [Multi-domain]  Cd Length: 574  Bit Score: 517.01  E-value: 3.24e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   2 ITQKISEELNKALAKMGIhDTQETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQ-DLFLEVNLQPP 80
Cdd:COG0018    3 IKEELAEAIAAALAALGA-GLEEPDILVERPKDPEHGDYATNVAMQLAKPLKKNPREIAEEIAEALDAdPLVEKVEIAGP 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  81 GFLNFKLKAKDHENLLKQIYYEKDRFGQF-SKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYW 159
Cdd:COG0018   82 GFINFFLSPAALAAVLKEILADGEDYGRSdAGKGKKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAGYDVTRENY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 160 INDAGNQIDKLAMSVLvRYLQlQNINIQLPADAYHGQeihlvaqtLYQTYKNQFINV--------RLNEKYEiDDDIANQ 231
Cdd:COG0018  162 INDAGTQIGKLALSLE-RYGE-EEIEPESKPDGYLGD--------LYVKFHKEYEEDpelediarELLAKLE-PGDEEAL 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 232 EIKNFAVKYLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKI--KPYTYTLDGALWLKTTTFGDDKDRVLIKSDG 309
Cdd:COG0018  231 ELWKKAVDWSLEEIKEDLKRLGVEFDVWFSESSLYDSGAVEEVVEELkeKGLLYESDGALWVRLTEFGDDKDRVLVKSDG 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 310 SYTYFTPDIAYHDYKFNKTNTTKLIDVWGTDHLGYIARLKAAMNALGYDP-NNLEIVCAQVMKLvKNNQefKLSKRSGQS 388
Cdd:COG0018  311 TYTYFTTDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGYDPaKDLEHLLFGMVNL-RDGE--KMSTRAGTV 387
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 389 LTIKDLVE-----------------------IIGKDALRWFLGSSSMNSHVIIDVDIALS-KNNNNPlyYVQYAHARANQ 444
Cdd:COG0018  388 VTLDDLLDeaverareiieekseeekeeiaeQVGIDAVRYFDLSRSRDKDLDFDLDLALSfEGNTNP--YVQYAHARICS 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 445 VLNKQVYELDFKTD----LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKVLS 520
Cdd:COG0018  466 ILRKAGEELDGLAEadlsLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNACRILKAEDEELR 545
                        570       580
                 ....*....|....*....|....*....
gi 493739754 521 AQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:COG0018  546 AARLALVAATAQVLKNGLGLLGISAPERM 574
argS PRK01611
arginyl-tRNA synthetase; Reviewed
1-549 1.54e-177

arginyl-tRNA synthetase; Reviewed


Pssm-ID: 234964 [Multi-domain]  Cd Length: 507  Bit Score: 510.08  E-value: 1.54e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   1 MITQKISEELNKALAKMGIHDTQEtkILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEqdlflEVNLQPP 80
Cdd:PRK01611   4 DIKELLAEALAAALEAGGLPELPA--VLIERPKDPEHGDYATNVAMQLAKKLKKNPREIAEEIVEAIE-----KVEIAGP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  81 GFLNFKLKAKDHENLLKQIYYEKDRFGQF-SKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYW 159
Cdd:PRK01611  77 GFINFFLDPAALAELVLAILEAGERYGRSdIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYY 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 160 INDAGNQIDKLAMSVlvrylqlqniniqlpadayhgqeihlvaqtlyqtyknqfinvrlnekyeidddianQEIKNFAVK 239
Cdd:PRK01611 157 VNDAGTQIGMLIASL--------------------------------------------------------ELLWRKAVD 180
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 240 YLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKI--KPYTYTL-DGALWLKTTTFGDDKDRVLIKSDGSYTYFTP 316
Cdd:PRK01611 181 ISLDEIKEDLDRLGVHFDVWFSESELYYNGKVDEVVEDLkeKGLLYVEsDGALWVRLTEFGDDKDRVLIKSDGTYTYFTR 260
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 317 DIAYHDYKFNKTNttKLIDVWGTDHLGYIARLKAAMNALGYDPNNLEIVCAQVMKLVKNNQEFKLSKRSGQSLTIKDLVE 396
Cdd:PRK01611 261 DIAYHLYKFERFD--RVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLD 338
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 397 -----------------IIGKDALRWFLGSSSMNSHVIIDVDIALSKNNNNPLyYVQYAHARANQVLNK-QVYELDFKTD 458
Cdd:PRK01611 339 eavgrarelieekeiaeAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPP-YVQYAHARICSILRKaAEAGIDLLLA 417
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 459 LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKVLSAqRYTLVWCVKQVLANGL 538
Cdd:PRK01611 418 LLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVLLKDEEEELRNA-RLALVKATAQVLKNGL 496
                        570
                 ....*....|.
gi 493739754 539 AIMKITPYDQM 549
Cdd:PRK01611 497 DLLGISAPERM 507
argS TIGR00456
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ...
2-549 1.46e-135

arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273085 [Multi-domain]  Cd Length: 563  Bit Score: 405.19  E-value: 1.46e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754    2 ITQKISEELNKALAKMGIHDtqETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQDLFLEVNLQPPG 81
Cdd:TIGR00456   1 IKTLLKEEISQALLKAGLSK--ESEILVEETPNPEFGDYASNIAFPLAKVLKKAPRQIAEEIVLKLKTGEIIEKVEAAGP 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   82 FLNFKLKAKDH-ENLLKQIYYEKDRFGQFSKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWI 160
Cdd:TIGR00456  79 FINFFLSPQKLlERLIQKILTQKEKYGSKKLKNKKIIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFLGYDVIREYYV 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  161 NDAGNQIDKLAMSVLVRYLQLQNINIQLPADAYHGQEIHlvaqtlyqtyknqfINVRLNEKYEIDD------------DI 228
Cdd:TIGR00456 159 NDWGRQFGLLALGVEKFGNEALNIAVKKPDHGLEGFYVE--------------INKRLEENEELEEearelfvklesgDE 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  229 ANQEIKNFAVKYLLNEIKNDLASINTFIDTYTSENWIRNSGRILEVLSKIKPYTYTL-DGALWLKTTTFGDDKDRVLIKS 307
Cdd:TIGR00456 225 ETIKLWKRLVEYSLEGIKETYDRLNIHFDSFVWEGESVKNGMLPKVLEDLKEKGLVVeDGALWLDLTLFGDKKDRVLQKS 304
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  308 DGSYTYFTPDIAYHDYKFnKTNTTKLIDVWGTDHLGYIARLKAAMNALGYDPNNLEIVCAQVMKLVK-----------NN 376
Cdd:TIGR00456 305 DGTYLYLTTDIAYHLDKL-ERGFDKMIYVWGSDHHLHIAQMFAILEKLGYKKKELEHLNFGMVPLYSmktrrgnvislDN 383
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  377 QEFKLSKRSGQSLTIK------DLVEIIGKDALRWFLGSSSMNSHVIIDVDIALSkNNNNPLYYVQYAHARANQVLNKQV 450
Cdd:TIGR00456 384 LLDEASKRAGNVITIKndleeeKVADAVGIGAVRYFDLSKNRTTDYVFDWDAMLS-FEGNTAPYIQYAHARICSILRKAE 462
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  451 Y---ELDFKTDLLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKvLSAQRYTLV 527
Cdd:TIGR00456 463 IdgeKLIADDFELLEEKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKACPVLDAENE-LAAARLALL 541
                         570       580
                  ....*....|....*....|..
gi 493739754  528 WCVKQVLANGLAIMKITPYDQM 549
Cdd:TIGR00456 542 KATRQTLKNGLDLLGIEPPERM 563
ArgRS_core cd00671
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ...
115-386 2.78e-66

catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.


Pssm-ID: 185675 [Multi-domain]  Cd Length: 212  Bit Score: 213.96  E-value: 2.78e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 115 TYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWINDAGNQIDKLAMSvlvrylqlqniniqlpadayh 194
Cdd:cd00671    1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILS--------------------- 59
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 195 gqeihlvaqtlyqtyknqfinvrlnekYEIDDDIANQEIKnfavkyllnEIKNDLASINTFIDTYTSENWIRN-SGRILE 273
Cdd:cd00671   60 ---------------------------LEKWRKLVEESIK---------ADLETYGRLDVRFDVWFGESSYLGlMGKVVE 103
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 274 VLSKiKPYTYTLDGALWLKTTTFGDDKDRVLIKSDGSYTYFTPDIAYHDYKFNkTNTTKLIDVWGTDHLGYIARLKAAMN 353
Cdd:cd00671  104 LLEE-LGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE-RGADKIIYVVGADHHGHFKRLFAALE 181
                        250       260       270
                 ....*....|....*....|....*....|....
gi 493739754 354 ALGYD-PNNLEIVCAQVMKLVKnnqEFKLSKRSG 386
Cdd:cd00671  182 LLGYDeAKKLEHLLYGMVNLPK---EGKMSTRAG 212
Anticodon_Ia_Arg cd07956
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ...
396-549 5.94e-37

Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.


Pssm-ID: 153410 [Multi-domain]  Cd Length: 156  Bit Score: 134.26  E-value: 5.94e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 396 EIIGKDALRWFLGSSSMNSHVIIDVDIALSKNNNnPLYYVQYAHARANQVLNKQVYELDFKTD----LLTETRERELLNQ 471
Cdd:cd07956    1 EEVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGD-TGPYLQYAHARLCSILRKAGETIEAEADadlsLLPEPDERDLILL 79
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 493739754 472 LHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKINNDNNKVLSAqRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:cd07956   80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNA-RLALVAAARQVLANGLDLLGIEAPERM 156
DALR_1 smart00836
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
435-549 1.06e-36

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.


Pssm-ID: 214846 [Multi-domain]  Cd Length: 122  Bit Score: 132.32  E-value: 1.06e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754   435 VQYAHARANQVLNK---QVYELDFKTD----LLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYA 507
Cdd:smart00836   1 VQYAHARICSILRKageAGETLPDIADadlsLLTEPEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSFYN 80
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 493739754   508 NVKINNDNNKVLSAQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:smart00836  81 RVRVLGEENPELRKARLALLKAVRQVLANGLRLLGISAPERM 122
DALR_1 pfam05746
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ...
435-549 1.82e-34

DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteriztic conserved amino acids.


Pssm-ID: 399042 [Multi-domain]  Cd Length: 117  Bit Score: 125.84  E-value: 1.82e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  435 VQYAHARANQVLNK---QVYELDFKTDLLTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYYANVKI 511
Cdd:pfam05746   1 LQYAHARICSILRKageLGINLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPHRLANYLYELASAFHSFYNNCRV 80
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 493739754  512 NNDNNKVLsAQRYTLVWCVKQVLANGLAIMKITPYDQM 549
Cdd:pfam05746  81 LDEDNEER-NARLALLKAVRQVLKNGLDLLGIEAPEKM 117
Arg_tRNA_synt_N pfam03485
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of ...
6-87 4.36e-21

Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.


Pssm-ID: 460943 [Multi-domain]  Cd Length: 83  Bit Score: 87.29  E-value: 4.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754    6 ISEELNKALAKMGIHDTQETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQ-DLFLEVNLQPPGFLN 84
Cdd:pfam03485   1 LKKAIAKALSKLGGPDLELIDIVIETPKNPKFGDYATNVAMQLAKKLKKNPREIAEEIAEKLEKsDIIEKVEVAGPGFIN 80

                  ...
gi 493739754   85 FKL 87
Cdd:pfam03485  81 FFL 83
Arg_tRNA_synt_N smart01016
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl ...
2-87 6.90e-18

Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.


Pssm-ID: 214975 [Multi-domain]  Cd Length: 85  Bit Score: 78.40  E-value: 6.90e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754     2 ITQKISEELNKALAKMGIhdtqETKILVDKTKNIKFGDFYTNIAMILSKKNNKSSLEIAKEIANNFEQ-DLFLEVNLQPP 80
Cdd:smart01016   3 LKEAIAEALKKALGVEGE----PIDIALERPKDPDHGDYATNVAFRLAKKLKKNPRELAEEIAEKLPKsDLVEKVEIAGP 78

                   ....*..
gi 493739754    81 GFLNFKL 87
Cdd:smart01016  79 GFINFFL 85
PLN02286 PLN02286
arginine-tRNA ligase
21-513 1.32e-15

arginine-tRNA ligase


Pssm-ID: 215160 [Multi-domain]  Cd Length: 576  Bit Score: 79.69  E-value: 1.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  21 DTQETKILVDKTKNIKFGDFYTNIAM----ILSKKNN--KSSLEIAKEIANNF-EQDLFLEVNLQPPGFLNFKLKAKD-H 92
Cdd:PLN02286  17 DEPSVEPLVAACTNPKFGDYQCNNAMglwsKLKGKGTsfKNPRAVAQAIVKNLpASEMIESTSVAGPGFVNVRLSASWlA 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  93 ENLLKQIYYEKDRFG-QFSKKNITynIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWINDAGNQidkLA 171
Cdd:PLN02286  97 KRIERMLVDGIDTWApTLPVKRAV--VDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQ---FG 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 172 MsvLVRYLqlqniniqlpADAY-HGQEIHLVA----QTLYQTYKNQFIN------------VRL---NEKY----EIDDD 227
Cdd:PLN02286 172 M--LIEHL----------FEKFpNWESVSDQAigdlQEFYKAAKKRFDEdeefkaraqqavVRLqggDPEYraawAKICE 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 228 IANQEiknFAVKY-LLN-EIKNDLASI-NTFIDTYTSEnwIRNSGRILEVlskikpytytlDGAlwlkTTTFGDDKDRVL 304
Cdd:PLN02286 240 ISRRE---FEKVYqRLRvELEEKGESFyNPYIPGVIEE--LESKGLVVES-----------DGA----RVIFVEGFDIPL 299
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 305 I--KSDGSYTYFTPDIAYHDYKFNKTNTTKLI---DVWGTDHLGYIarLKAAMNAlGYDPNNLEIVCAQV-MKLVKNNQE 378
Cdd:PLN02286 300 IvvKSDGGFNYASTDLAALWYRLNEEKAEWIIyvtDVGQQQHFDMV--FKAAKRA-GWLPEDTYPRLEHVgFGLVLGEDG 376
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 379 FKLSKRSGQSLTIKDLV---EIIGKDALRWFLGSSSMNSHVIIDVDIALS---------KNN----------------NN 430
Cdd:PLN02286 377 KRFRTRSGEVVRLVDLLdeaKSRSKAALIERGKDSEWTPEELEQAAEAVGygavkyadlKNNrltnytfsfdqmldlkGN 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754 431 PLYYVQYAHARANQVL---NKQVYELDFKTDL-LTETRERELLNQLHFYKQTIANAANNREPHRISNYLYDLAQIFHNYY 506
Cdd:PLN02286 457 TAVYLLYAHARICSIIrksGKDIDELKKTGKIvLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFY 536

                 ....*..
gi 493739754 507 ANVKINN 513
Cdd:PLN02286 537 SNCKVNG 543
tRNA-synt_1d pfam00750
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ...
104-404 7.03e-10

tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.


Pssm-ID: 395607 [Multi-domain]  Cd Length: 348  Bit Score: 60.66  E-value: 7.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  104 DRFGQFSKKNITYNIEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWINDAGNQIDKLAMSvLVRYLQ--- 180
Cdd:pfam00750   9 KGLGKASREKKKVVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAG-LEKYQDekt 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  181 LQNINIQLPADAYHGQEIHLVAQTLYQTYKNQFInVRLNEKyeiDDDIanQEIKNFAVKYLLNEIKNDLASINTFIdTYT 260
Cdd:pfam00750  88 LQEMPIQDLEDFYREAKKHYDEEEEFAERARNYV-VKLQSG---DEYW--RRMWKLIVDITMTQNQRLYDRLDVTL-TEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493739754  261 SENWIRNS-GRILEVLSKiKPYTYTLDGALWLKTTTFGDDKDRVLIKSDGSYTYFTPDIAYHDYKFNKTNTTKLIDVWGT 339
Cdd:pfam00750 161 GESLYNPMmNEIVKDFKK-NGLVVEIDGALVVFLDEFGKPMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRMLYVIDS 239
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 493739754  340 DHLGYIARLKAAMNALGYDPNNLEIVCAQV-MKLVKNNQEFKlsKRSGQSLTIKDLVEIIGKDALR 404
Cdd:pfam00750 240 RQSQHMQQAFAILRKAGYVPESKDLEHINFgMVLGKDGKPFK--TRKGGTVKLADLLDEALERALQ 303
class_I_aaRS_core cd00802
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA ...
118-171 8.33e-04

catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.


Pssm-ID: 173901 [Multi-domain]  Cd Length: 143  Bit Score: 39.77  E-value: 8.33e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 493739754 118 IEYVSANPTGYLHIAHAANAIYGDILANLLKIYGYDVETEYWINDAGNQIDKLA 171
Cdd:cd00802    1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPA 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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